Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3719g0240 Pisum sativum HOM05D010975 ORTHO05D010903 6.8e-113 410.6 199 100.0
Psat0s3719g0280 Pisum sativum HOM05D010975 ORTHO05D010903 6.8e-113 410.6 199 100.0
Psat4g183920 Pisum sativum HOM05D010975 ORTHO05D010903 8.7e-100 367.1 199 91.0
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 4.1e-57 225.3 199 58.3
TPR.G22874 Trifolium pratense HOM05D010975 ORTHO05D010903 2.9e-55 219.2 203 55.7
Psat0s3719g0160 Pisum sativum HOM05D015964 ORTHO05D010903 2.8e-42 176.0 169 53.8
Psat0s3719g0080 Pisum sativum HOM05D015964 ORTHO05D010903 5.9e-32 141.7 130 55.4
EL10Ac2g04322 Beta vulgaris HOM05D010975 ORTHO05D010903 2.2e-31 139.8 175 45.7
EL10Ac2g04324 Beta vulgaris HOM05D010975 ORTHO05D010903 2.2e-31 139.8 175 45.7
AUR62025886 Chenopodium quinoa HOM05D010975 ORTHO05D010903 1.8e-28 130.2 130 50.0
AUR62025883 Chenopodium quinoa HOM05D010975 ORTHO05D010903 5.2e-28 128.6 128 50.8
AUR62034275 Chenopodium quinoa HOM05D010975 ORTHO05D010903 5.7e-27 125.2 154 44.2
DCAR_011104 Daucus carota HOM05D010975 ORTHO05D010903 2.8e-26 122.9 138 42.8
EL10Ac4g09371 Beta vulgaris HOM05D010975 ORTHO05D010903 4.1e-25 119.0 165 41.8
EL10Ac8g19026 Beta vulgaris HOM05D010975 ORTHO05D010903 5.4e-25 118.6 165 41.8
AUR62034277 Chenopodium quinoa HOM05D010975 ORTHO05D010903 2.7e-24 116.3 111 49.5
EL10Ac4g09372 Beta vulgaris HOM05D010975 ORTHO05D010903 4.5e-24 115.5 145 43.4
EL10Ac8g19025 Beta vulgaris HOM05D010975 ORTHO05D010903 4.5e-24 115.5 141 44.7
DCAR_010389 Daucus carota HOM05D025501 ORTHO05D010903 1.2e-21 107.5 138 40.6
DCAR_017628 Daucus carota HOM05D010975 ORTHO05D010903 1.2e-19 100.9 121 43.0
SalBow6G5927 Salvia bowleyana HOM05D010975 ORTHO05D010903 4.4e-19 99.0 146 33.6
DCAR_010390 Daucus carota HOM05D025501 ORTHO05D010903 4.9e-18 95.5 138 38.4
SGA_v2.0_scaffold161G37792 Striga asiatica HOM05D013081 ORTHO05D010903 3.3e-14 82.8 198 28.3
AUR62025887 Chenopodium quinoa HOM05D013081 ORTHO05D010903 1.2e-13 80.9 176 31.2
SalBow6G7226 Salvia bowleyana HOM05D010975 ORTHO05D010903 2.0e-11 73.6 107 33.6
CSS0042022 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 5.8e-11 72.0 197 28.9
AUR62016889 Chenopodium quinoa HOM05D013081 ORTHO05D010903 1.3e-10 70.9 134 33.6
Aqoxy2G02523 Aquilegia oxysepala HOM05D000176 ORTHO05D000106 2.2e-10 70.1 165 24.8
EL10Ac4g09643 Beta vulgaris HOM05D013081 ORTHO05D010903 2.9e-10 69.7 137 32.1
EL10Ac5g12667 Beta vulgaris HOM05D013081 ORTHO05D010903 2.9e-10 69.7 137 32.1
EL10Ac9g21162 Beta vulgaris HOM05D013081 ORTHO05D010903 3.7e-10 69.3 138 32.6
Prupe.8G014000 Prunus persica HOM05D000176 ORTHO05D000106 4.9e-10 68.9 128 29.7
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 6.4e-10 68.6 155 29.0
Psat0s1818g0080 Pisum sativum HOM05D015964 ORTHO05D015958 8.3e-10 68.2 85 45.9
Psat4g056600 Pisum sativum HOM05D015947 ORTHO05D013665 1.4e-09 67.4 168 28.6
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 1.4e-09 67.4 125 31.2
TPR.G9385 Trifolium pratense HOM05D015964 ORTHO05D010903 1.4e-09 67.4 95 41.1
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 1.9e-09 67.0 128 32.8
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 7.0e-09 65.1 128 33.6
FvH4_4g28291 Fragaria vesca HOM05D000176 ORTHO05D000106 3.5e-08 62.8 153 26.1
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 3.5e-08 62.8 126 31.0
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 3.5e-08 62.8 126 31.0
MD10G1009900 Malus domestica HOM05D000176 ORTHO05D000106 4.6e-08 62.4 128 28.9
Migut.O00342 Erythranthe guttata HOM05D059431 ORTHO05D022538 1.3e-07 60.8 126 31.0
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 1.3e-07 60.8 125 29.6
TPR.G34910 Trifolium pratense HOM05D015947 ORTHO05D013665 1.3e-07 60.8 168 26.8
Lj8C619G11 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-07 60.5 95 30.5
Lj5C479G2 Lonicera japonica HOM05D000176 ORTHO05D000106 2.3e-07 60.1 95 29.5
TWI53G0034 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 2.3e-07 60.1 113 28.3
Ca_04467_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 5.0e-07 58.9 142 26.1
Lj4C692T4 Lonicera japonica HOM05D000176 ORTHO05D000106 5.0e-07 58.9 95 30.5
Lj9C3T3 Lonicera japonica HOM05D000176 ORTHO05D000106 5.0e-07 58.9 95 30.5
Peaxi162Scf00146g01211 Petunia axillaris HOM05D000176 ORTHO05D000106 5.0e-07 58.9 126 27.8
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 5.0e-07 58.9 125 28.8
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 6.6e-07 58.5 128 29.7
COL.COLO4_05314 Corchorus olitorius HOM05D017396 ORTHO05D025145 6.6e-07 58.5 118 28.8
Prupe.6G357900 Prunus persica HOM05D011609 ORTHO05D000106 6.6e-07 58.5 152 26.3
Lj1C99T4 Lonicera japonica HOM05D000176 ORTHO05D000106 8.6e-07 58.2 87 35.6
MD17G1028300 Malus domestica HOM05D000176 ORTHO05D000106 8.6e-07 58.2 160 26.2
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.1e-06 57.8 128 29.7
Solyc12g006100.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.1e-06 57.8 133 25.6
Sopen12g002060 Solanum pennellii HOM05D000176 ORTHO05D003511 1.1e-06 57.8 133 25.6
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.5e-06 57.4 124 26.6
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 1.9e-06 57.0 124 26.6
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 1.9e-06 57.0 128 29.7
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.9e-06 57.0 124 26.6
HanXRQChr09g0246821 Helianthus annuus HOM05D000176 ORTHO05D000106 1.9e-06 57.0 128 29.7
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 1.9e-06 57.0 128 30.5
PSO675G8169 Papaver somniferum HOM05D000176 ORTHO05D000106 1.9e-06 57.0 116 31.9
Lsat_1_v5_gn_7_67341 Lactuca sativa HOM05D000176 ORTHO05D000106 2.5e-06 56.6 128 28.9
Sopen10g035120 Solanum pennellii HOM05D000176 ORTHO05D000106 2.5e-06 56.6 145 26.2
COL.COLO4_00098 Corchorus olitorius HOM05D017396 ORTHO05D025145 3.3e-06 56.2 97 26.8
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 4.3e-06 55.8 128 28.9
Hma1.2p1_0690F.1_g203890 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 4.3e-06 55.8 162 26.5
Solyc10g085700.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.3e-06 55.8 117 28.2
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 5.6e-06 55.5 128 28.9
CSS0039650 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 5.6e-06 55.5 161 25.5
VMungo0647G2344 Vigna mungo HOM05D000176 ORTHO05D000106 5.6e-06 55.5 160 25.0
AL7G46800 Arabidopsis lyrata HOM05D015699 ORTHO05D013665 7.3e-06 55.1 155 29.0
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 7.3e-06 55.1 128 28.9
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 7.3e-06 55.1 128 28.9
PSO339G3712 Papaver somniferum HOM05D000176 ORTHO05D000106 7.3e-06 55.1 123 25.2
TWI73G0304 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 7.3e-06 55.1 161 29.2
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 9.5e-06 54.7 124 30.6
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 9.5e-06 54.7 128 30.5


User provided reference genes

Program Settings