Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 4.0e-257 891.0 460 100.0
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 1.5e-187 659.8 473 77.2
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 2.4e-129 466.5 357 73.9
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 1.3e-114 417.5 393 62.1
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 4.5e-107 392.5 393 59.0
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 6.4e-106 388.7 406 56.2
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 1.0e-95 354.8 395 54.4
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 5.3e-92 342.4 392 52.8
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 7.6e-91 338.6 331 58.3
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 1.1e-84 318.2 363 52.6
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 3.1e-84 316.6 392 48.7
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 4.5e-83 312.8 392 48.2
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 3.9e-63 246.5 377 40.6
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 2.6e-62 243.8 435 39.3
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 3.1e-60 236.9 393 39.9
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 1.2e-59 235.0 394 38.8
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 3.5e-59 233.4 393 38.2
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 1.0e-58 231.9 375 39.5
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 6.5e-58 229.2 395 38.2
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 2.1e-56 224.2 392 39.0
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 4.7e-56 223.0 390 37.9
Psat5g136520 Pisum sativum HOM05D004450 ORTHO05D005491 8.0e-56 222.2 126 91.3
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 1.4e-55 221.5 395 39.0
Psat0ss3186g0160 Pisum sativum HOM05D000564 ORTHO05D002780 2.3e-55 220.7 126 92.1
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.8e-53 213.8 372 39.0
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.4e-52 211.5 393 36.4
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 2.4e-52 210.7 393 35.9
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 2.4e-52 210.7 396 36.6
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 5.3e-52 209.5 379 38.8
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 7.0e-52 209.1 387 36.4
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 1.6e-51 208.0 398 35.9
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.0e-51 207.6 393 35.6
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 7.7e-51 205.7 394 36.0
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.3e-50 204.9 386 36.5
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 1.5e-49 201.4 341 39.3
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 1.5e-49 201.4 386 36.0
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 5.5e-49 199.5 440 34.3
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 9.4e-49 198.7 386 35.8
Medtr3g073620 Medicago truncatula HOM05D004450 ORTHO05D005491 1.6e-48 198.0 126 81.0
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 2.1e-48 197.6 408 35.3
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 8.0e-48 195.7 425 34.4
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.0e-47 195.3 396 35.1
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 2.6e-46 190.7 384 34.6
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 5.7e-46 189.5 239 46.0
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 2.8e-45 187.2 395 33.7
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 2.8e-45 187.2 395 33.7
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 4.8e-45 186.4 395 33.4
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 4.8e-45 186.4 395 32.9
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 6.3e-45 186.0 396 34.3
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 8.3e-45 185.7 381 35.2
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 1.8e-44 184.5 387 34.4
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 1.8e-44 184.5 343 36.4
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 2.4e-44 184.1 242 46.3
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 5.4e-44 183.0 384 33.9
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 1.6e-43 181.4 383 33.7
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 2.7e-43 180.6 326 37.4
Ca_26313_v3 Cicer arietinum L. HOM05D004450 ORTHO05D005491 4.5e-43 179.9 125 76.8
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 4.5e-43 179.9 380 35.8
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 7.7e-43 179.1 238 42.4
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 1.7e-42 177.9 239 44.4
Psat0s3642g0080 Pisum sativum HOM05D004450 ORTHO05D005491 1.7e-42 177.9 91 100.0
TPR.G28951 Trifolium pratense HOM05D004450 ORTHO05D005491 1.7e-42 177.9 180 58.9
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 2.5e-41 174.1 375 33.3
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 2.5e-41 174.1 394 32.7
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 9.5e-41 172.2 238 41.6
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 1.2e-40 171.8 356 34.8
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 1.6e-40 171.4 394 32.7
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.6e-40 171.4 383 31.9
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 4.7e-40 169.9 381 31.8
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 8.0e-40 169.1 356 33.4
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.8e-39 167.9 384 31.8
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.3e-39 167.5 164 59.8
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 5.2e-39 166.4 240 41.7
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 4.4e-38 163.3 381 31.2
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 2.2e-37 161.0 373 31.9
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 4.9e-37 159.8 380 33.4
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 8.3e-37 159.1 97 78.4
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 1.1e-36 158.7 385 31.4
Lj1g0009455 Lotus japonicus HOM05D004450 ORTHO05D005491 1.2e-35 155.2 125 65.6
VMungo1309G1299 Vigna mungo HOM05D004450 ORTHO05D005491 2.0e-35 154.5 125 67.2
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 5.9e-35 152.9 247 40.9
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 1.0e-34 152.1 238 39.9
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.3e-34 151.8 242 39.7
Glyma.06G106900 Glycine max HOM05D004450 ORTHO05D005491 6.6e-34 149.4 125 67.2
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 8.6e-34 149.1 239 39.3
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 1.5e-33 148.3 413 29.8
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 2.5e-33 147.5 379 30.3
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.6e-32 144.8 183 51.4
Glyma.04G107100 Glycine max HOM05D004450 ORTHO05D005491 2.8e-32 144.1 125 62.4
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 2.8e-32 144.1 352 34.1
arahy.Tifrunner.gnm1.ann1.KN8WKR Arachis hypogaea HOM05D004450 ORTHO05D005491 3.6e-32 143.7 125 64.0
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 3.6e-32 143.7 241 38.6
Phvul.009G027200 Phaseolus vulgaris HOM05D004450 ORTHO05D005491 4.7e-32 143.3 125 61.6
arahy.Tifrunner.gnm1.ann1.T35Q4E Arachis hypogaea HOM05D004450 ORTHO05D005491 1.4e-31 141.7 125 63.2
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 3.0e-31 140.6 359 30.9
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 5.8e-30 136.3 280 35.0
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 5.8e-30 136.3 359 30.4
Lalb_Chr08g0241811 Lupinus albus HOM05D004450 ORTHO05D005491 5.8e-30 136.3 124 59.7
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 4.1e-28 130.2 350 30.3
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 5.4e-28 129.8 358 29.6
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 1.2e-27 128.6 104 66.3
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.2e-27 128.6 373 30.3
Lalb_Chr23g0270731 Lupinus albus HOM05D004450 ORTHO05D005491 3.5e-27 127.1 222 39.6
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 3.5e-27 127.1 338 29.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-24 117.9 70 88.6
MD08G1176200 Malus domestica HOM05D004450 ORTHO05D005491 3.4e-22 110.5 125 49.6
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 7.5e-22 109.4 346 28.3
MD15G1361900 Malus domestica HOM05D004450 ORTHO05D005491 4.9e-21 106.7 125 49.6
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.1e-20 105.5 386 26.7
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.4e-20 105.1 235 33.2
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 3.2e-20 104.0 341 28.2
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 4.1e-20 103.6 228 31.1
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 5.4e-20 103.2 96 52.1
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 5.0e-18 96.7 245 29.8
RcHm_v2.0_Chr7g0240181 Rosa chinensis HOM05D004450 ORTHO05D005491 5.0e-18 96.7 122 45.9
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 6.6e-18 96.3 96 51.0
Atru.chr13.1280 Acer truncatum HOM05D004450 ORTHO05D005491 1.1e-17 95.5 132 41.7
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 1.1e-17 95.5 52 90.4
Prupe.1G510000 Prunus persica HOM05D004450 ORTHO05D005491 3.3e-17 94.0 125 44.0
FvH4_5g38230 Fragaria vesca HOM05D004450 ORTHO05D005491 9.5e-17 92.4 122 45.1
FAN08G3465 Fragaria x ananassa HOM05D004450 ORTHO05D005491 9.5e-17 92.4 122 45.1
Gohir.A06G039400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 9.5e-17 92.4 132 41.7
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 9.5e-17 92.4 247 30.0
FAN18G0908 Fragaria x ananassa HOM05D004450 ORTHO05D005491 2.1e-16 91.3 122 45.1
Gorai.010G042800 Gossypium raimondii HOM05D004450 ORTHO05D005491 2.1e-16 91.3 121 44.6
FAN04G1322 Fragaria x ananassa HOM05D004450 ORTHO05D005491 6.2e-16 89.7 122 43.4
Gohir.D06G040400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 8.1e-16 89.4 121 43.8
Dinv44730 Davidia involucrata HOM05D004450 ORTHO05D005491 2.3e-15 87.8 124 40.3
FAN13G1849 Fragaria x ananassa HOM05D004450 ORTHO05D005491 4.0e-15 87.0 129 38.8
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 2.0e-14 84.7 206 31.1
Duzib093G0537 Durio zibethinus HOM05D004450 ORTHO05D005491 3.4e-14 84.0 132 39.4
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 7.5e-14 82.8 100 40.0
Thecc.08G113700 Theobroma cacao HOM05D004450 ORTHO05D005491 1.7e-13 81.6 132 38.6
Dinv13057 Davidia involucrata HOM05D004450 ORTHO05D005491 2.2e-13 81.3 132 37.1
Manes.18G071100 Manihot esculenta HOM05D004450 ORTHO05D005491 3.7e-13 80.5 132 33.3
Sabra05G0127500 Salix brachista HOM05D004450 ORTHO05D005491 3.7e-13 80.5 132 36.4
Eucgr.H00921 Eucalyptus grandis HOM05D004450 ORTHO05D005491 6.4e-13 79.7 125 36.0
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 8.3e-13 79.3 84 48.8
Cfa015933 Carpinus fangiana HOM05D004450 ORTHO05D005491 1.4e-12 78.6 132 37.1
Gorai.010G045100 Gossypium raimondii HOM05D004450 ORTHO05D005491 1.4e-12 78.6 106 44.3
Haze_00557 Corylus avellana HOM05D004450 ORTHO05D005491 5.4e-12 76.6 132 36.4
CANSAT25G3861 Cannabis sativa HOM05D004450 ORTHO05D005491 7.1e-12 76.3 118 42.4
Cpa.g.sc66.104 Carica papaya HOM05D004450 ORTHO05D005491 7.1e-12 76.3 131 35.9
Potri.005G170066 Populus trichocarpa HOM05D004450 ORTHO05D005491 7.1e-12 76.3 132 34.8
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 2.1e-11 74.7 223 29.1
TAR628G1211 Trochodendron aralioides HOM05D004450 ORTHO05D005491 6.0e-11 73.2 250 28.8
CiPaw.05G231800 Carya illinoinensis HOM05D004450 ORTHO05D005491 1.7e-10 71.6 132 35.6
Sed0020591 Sechium edule HOM05D004450 ORTHO05D005491 3.0e-10 70.9 117 37.6
Manes.02G157000 Manihot esculenta HOM05D004450 ORTHO05D005491 3.9e-10 70.5 119 35.3
ClCG03G008890 Citrullus lanatus HOM05D004450 ORTHO05D005491 5.1e-10 70.1 115 37.4
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.1e-09 68.9 91 39.6
Psat0s3411g0120 Pisum sativum HOM05D001046 ORTHO05D015028 1.5e-09 68.6 36 94.4
Ciclev10003301m.g Citrus clementina HOM05D004450 ORTHO05D005491 1.9e-09 68.2 94 41.5
Psat1g056440 Pisum sativum HOM05D003414 ORTHO05D003913 1.9e-09 68.2 36 94.4
Actinidia10290 Actinidia chinensis HOM05D004450 ORTHO05D005491 3.3e-09 67.4 132 33.3
Hund26655 Selenicereus undatus HOM05D004450 ORTHO05D005491 9.5e-09 65.9 124 34.7
CsaV3_5G023850 Cucumis sativus L. HOM05D004450 ORTHO05D005491 1.2e-08 65.5 107 34.6
MELO3C022819.2 Cucumis melo HOM05D004450 ORTHO05D005491 1.6e-08 65.1 107 34.6
Sabra02G0072500 Salix brachista HOM05D004450 ORTHO05D005491 1.6e-08 65.1 132 32.6
PGR042G3086 Punica granatum HOM05D004450 ORTHO05D005491 2.1e-08 64.7 132 31.8
Sc20g0003030 Simmondsia chinensis HOM05D004450 ORTHO05D005491 3.6e-08 63.9 124 32.3
Lj4C711G4 Lonicera japonica HOM05D004450 ORTHO05D005491 6.2e-08 63.2 227 26.4
Nn5g28982 Nelumbo nucifera HOM05D004450 ORTHO05D005491 6.2e-08 63.2 129 35.7
QL12p035690 Quercus lobata HOM05D004450 ORTHO05D005491 6.2e-08 63.2 110 39.1
THA.LOC104800171 Tarenaya hassleriana HOM05D004450 ORTHO05D005491 6.2e-08 63.2 96 37.5
Gohir.D02G082600 Gossypium hirsutum HOM05D004450 ORTHO05D005491 1.1e-07 62.4 150 32.7
Gorai.005G092600 Gossypium raimondii HOM05D004450 ORTHO05D005491 1.1e-07 62.4 261 27.2
Potri.002G091700 Populus trichocarpa HOM05D004450 ORTHO05D005491 5.2e-07 60.1 132 30.3
AUR62034367 Chenopodium quinoa HOM05D004450 ORTHO05D005491 6.8e-07 59.7 114 31.6
MBI05_g36570_MAGBIO Magnolia biondii HOM05D004450 ORTHO05D005491 6.8e-07 59.7 170 27.6
AUR62022339 Chenopodium quinoa HOM05D004450 ORTHO05D005491 1.2e-06 58.9 123 30.9
Aa31LG7G6050 Aethionema arabicum HOM05D004450 ORTHO05D005491 4.4e-06 57.0 127 31.5


User provided reference genes

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