Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 5.5e-89 330.9 159 100.0
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 5.2e-79 297.7 169 84.6
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.1e-76 290.0 167 81.4
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 7.7e-75 283.9 182 75.8
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.2e-73 278.5 161 82.0
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 9.4e-73 276.9 160 82.5
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 2.7e-72 275.4 161 81.4
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 6.8e-71 270.8 158 81.6
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.4e-68 263.1 171 74.3
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.8e-68 262.7 170 74.7
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.8e-68 262.7 161 77.0
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 5.4e-68 261.2 161 76.4
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 5.4e-68 261.2 171 73.7
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.0e-66 256.9 161 75.2
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 1.7e-66 256.1 161 75.8
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 2.2e-66 255.8 170 73.5
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 9.4e-65 250.4 170 72.4
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 1.4e-63 246.5 171 71.3
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 5.2e-63 244.6 160 75.6
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 6.8e-63 244.2 169 71.6
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.4e-62 241.5 165 67.9
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 7.5e-62 240.7 164 70.7
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 6.3e-61 237.7 169 68.0
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 8.3e-61 237.3 162 68.5
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 4.1e-60 235.0 164 67.1
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.2e-59 233.4 164 66.5
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.2e-59 233.4 169 65.7
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.6e-59 233.0 169 67.5
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 4.5e-59 231.5 166 68.1
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.5e-59 231.5 162 67.9
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 5.9e-59 231.1 155 67.7
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.3e-58 229.9 158 70.3
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.3e-58 229.2 169 65.7
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 2.9e-58 228.8 162 67.3
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.6e-58 227.3 162 64.8
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 8.6e-58 227.3 162 64.8
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.5e-57 226.5 169 63.9
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.5e-57 225.7 161 65.2
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 5.5e-57 224.6 161 65.2
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 7.2e-57 224.2 163 63.2
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 7.2e-57 224.2 158 66.5
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.2e-56 223.4 169 63.3
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 3.6e-56 221.9 163 63.8
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 3.6e-56 221.9 164 62.8
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 3.6e-56 221.9 155 69.0
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.0e-56 220.7 167 64.1
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 8.0e-56 220.7 167 64.1
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.0e-55 220.3 166 62.0
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.0e-55 220.3 167 63.5
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 2.3e-55 219.2 162 63.6
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 3.0e-55 218.8 169 62.1
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 6.8e-55 217.6 161 66.5
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.2e-54 216.9 164 64.0
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.2e-54 216.9 164 64.0
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 2.6e-54 215.7 161 64.6
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.4e-54 215.3 163 61.3
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 4.4e-54 214.9 160 63.1
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 5.7e-54 214.5 99 100.0
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.7e-53 213.0 159 64.2
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.9e-53 212.2 160 63.1
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 3.7e-53 211.8 160 62.5
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 6.3e-53 211.1 160 62.5
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.3e-53 211.1 160 63.1
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.3e-53 211.1 160 64.4
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 8.3e-53 210.7 160 63.8
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.4e-52 209.9 164 60.4
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 3.2e-52 208.8 167 61.7
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 3.2e-52 208.8 164 59.8
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 3.2e-52 208.8 163 62.6
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 5.4e-52 208.0 159 62.3
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 5.4e-52 208.0 163 60.7
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 9.2e-52 207.2 161 62.7
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.7e-51 205.7 156 62.2
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 7.8e-51 204.1 159 59.1
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 7.8e-51 204.1 163 59.5
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.7e-50 203.0 155 61.9
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 2.3e-50 202.6 164 57.3
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 2.3e-50 202.6 161 62.1
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 2.9e-50 202.2 164 57.3
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.9e-50 202.2 164 58.5
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.9e-50 202.2 156 60.9
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 5.0e-50 201.4 164 57.3
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.5e-49 199.9 158 62.0
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 1.9e-49 199.5 164 60.4
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 4.3e-49 198.4 171 58.5
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 5.6e-49 198.0 165 58.2
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 7.3e-49 197.6 158 61.4
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 7.3e-49 197.6 155 59.4
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 9.5e-49 197.2 149 60.4
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.2e-48 196.8 156 59.0
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 3.6e-48 195.3 161 57.1
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.7e-48 194.9 164 54.9
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.4e-47 193.4 162 58.0
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.4e-47 193.4 160 56.9
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.8e-47 193.0 162 57.4
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.8e-47 193.0 161 56.5
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.3e-47 192.6 158 60.1
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.1e-47 192.2 158 57.6
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 3.1e-47 192.2 164 59.1
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.2e-46 190.3 158 58.9
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 2.6e-46 189.1 162 54.9
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.4e-46 188.7 151 57.0
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.3e-45 186.8 164 53.7
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.9e-45 185.7 160 53.8
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 4.9e-45 184.9 157 54.8
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 8.3e-45 184.1 157 54.1
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.4e-44 183.3 110 73.6
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.4e-44 183.3 110 73.6
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.9e-44 183.0 153 57.5
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 5.4e-44 181.4 165 50.9
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.6e-43 179.9 161 54.0
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 3.5e-43 178.7 165 50.9
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 7.8e-43 177.6 164 53.0
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 7.8e-43 177.6 132 64.4
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 5.0e-42 174.9 162 52.5
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 4.3e-41 171.8 164 50.0
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 3.6e-40 168.7 167 47.9
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.8e-39 166.4 165 51.5
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 1.8e-39 166.4 150 56.0
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 2.3e-39 166.0 161 51.6
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 4.0e-39 165.2 162 49.4
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 6.8e-39 164.5 169 47.9
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 3.4e-38 162.2 167 46.7
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 3.4e-38 162.2 167 46.7
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.4e-38 162.2 158 46.8
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 5.8e-38 161.4 158 48.7
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 5.8e-38 161.4 107 69.2
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 4.9e-37 158.3 166 47.0
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.4e-36 156.8 163 48.5
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.4e-36 156.8 163 48.5
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.6e-35 153.3 153 47.7
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 2.1e-35 152.9 151 48.3
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.1e-33 147.1 161 46.6
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.9e-33 146.4 164 47.0
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.3e-33 145.6 166 45.2
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.6e-32 142.1 168 44.6
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.1e-32 141.0 167 42.5
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.1e-31 140.6 116 53.4
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.4e-31 140.2 109 56.0
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 8.9e-31 137.5 107 57.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 8.9e-31 137.5 110 55.5
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.5e-30 136.7 161 41.6
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.7e-29 133.3 154 46.8
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.2e-28 129.0 111 54.1
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 4.1e-28 128.6 172 40.7
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.2e-22 110.5 163 38.0
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.4e-20 101.7 190 32.6
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 3.6e-16 89.0 127 39.4
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 3.1e-15 85.9 159 35.8


User provided reference genes

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