Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 1.6e-131 472.6 222 100.0
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 7.9e-09 65.1 37 78.4
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 1.8e-08 63.9 38 73.7
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.8e-08 63.9 38 73.7
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 2.3e-08 63.5 36 75.0
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 3.0e-08 63.2 38 76.3
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 3.0e-08 63.2 42 66.7
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 3.0e-08 63.2 42 66.7
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 5.1e-08 62.4 38 71.1
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 5.1e-08 62.4 42 64.3
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 5.1e-08 62.4 40 72.5
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 6.7e-08 62.0 40 70.0
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 6.7e-08 62.0 37 73.0
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 1.1e-07 61.2 37 73.0
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 1.1e-07 61.2 35 77.1
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 1.1e-07 61.2 62 51.6
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 1.9e-07 60.5 42 61.9
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 1.9e-07 60.5 41 63.4
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 2.5e-07 60.1 37 73.0
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 3.3e-07 59.7 40 65.0
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 3.3e-07 59.7 37 67.6
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 3.3e-07 59.7 37 70.3
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 3.3e-07 59.7 40 65.0
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 3.3e-07 59.7 37 70.3
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 3.3e-07 59.7 37 70.3
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 3.3e-07 59.7 37 70.3
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 3.3e-07 59.7 37 70.3
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 3.3e-07 59.7 42 61.9
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 3.3e-07 59.7 37 70.3
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 4.3e-07 59.3 37 73.0
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 4.3e-07 59.3 37 73.0
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 4.3e-07 59.3 37 67.6
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 5.6e-07 58.9 37 70.3
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 5.6e-07 58.9 37 67.6
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 5.6e-07 58.9 37 70.3
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 5.6e-07 58.9 40 67.5
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 5.6e-07 58.9 36 72.2
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 5.6e-07 58.9 40 65.0
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 7.4e-07 58.5 37 67.6
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 7.4e-07 58.5 37 70.3
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 7.4e-07 58.5 37 67.6
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 7.4e-07 58.5 37 67.6
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 7.4e-07 58.5 37 67.6
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 7.4e-07 58.5 37 67.6
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 7.4e-07 58.5 42 61.9
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 7.4e-07 58.5 39 64.1
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 7.4e-07 58.5 37 70.3
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 9.6e-07 58.2 37 70.3
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 9.6e-07 58.2 37 70.3
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 1.3e-06 57.8 40 65.0
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 1.3e-06 57.8 50 56.0
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 1.3e-06 57.8 37 64.9
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 1.3e-06 57.8 42 59.5
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 1.6e-06 57.4 37 64.9
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 1.6e-06 57.4 37 67.6
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 1.6e-06 57.4 37 67.6
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 1.6e-06 57.4 37 67.6
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 1.6e-06 57.4 39 61.5
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 2.1e-06 57.0 35 71.4
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 2.1e-06 57.0 39 64.1
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 2.1e-06 57.0 36 63.9
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 2.1e-06 57.0 37 64.9
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 2.1e-06 57.0 37 64.9
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 2.1e-06 57.0 52 53.8
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 2.1e-06 57.0 44 56.8
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 2.8e-06 56.6 39 61.5
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 2.8e-06 56.6 39 61.5
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 2.8e-06 56.6 39 61.5
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 2.8e-06 56.6 39 61.5
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 2.8e-06 56.6 39 61.5
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 2.8e-06 56.6 39 61.5
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 2.8e-06 56.6 52 50.0
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 3.6e-06 56.2 40 65.0
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 3.6e-06 56.2 37 67.6
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 3.6e-06 56.2 37 64.9
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 3.6e-06 56.2 37 70.3
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 3.6e-06 56.2 37 70.3
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 6.2e-06 55.5 40 62.5
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 6.2e-06 55.5 35 68.6
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 6.2e-06 55.5 35 62.9
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 6.2e-06 55.5 35 62.9
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 6.2e-06 55.5 37 64.9
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 8.1e-06 55.1 37 64.9


User provided reference genes

Program Settings