Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.2e-219 766.1 386 100.0
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 6.9e-170 600.9 374 81.8
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 4.1e-162 575.1 369 81.3
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 4.6e-158 561.6 375 78.4
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 3.7e-155 552.0 377 76.4
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.4e-154 550.1 377 76.1
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 6.9e-154 547.7 379 76.5
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.4e-151 540.0 373 75.6
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.5e-151 539.3 371 76.3
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.6e-137 493.4 374 66.8
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 7.7e-137 491.1 327 74.0
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 2.2e-136 489.6 300 78.7
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 8.5e-136 487.6 379 69.9
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 8.5e-136 487.6 379 70.2
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 3.2e-135 485.7 373 67.6
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 3.2e-135 485.7 371 67.9
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.4e-133 480.3 323 73.4
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.4e-133 480.3 371 67.9
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.0e-133 479.2 377 65.3
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 6.8e-133 478.0 379 66.8
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.6e-132 476.1 394 64.5
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 4.4e-132 475.3 300 77.0
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.3e-131 473.8 377 64.7
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.7e-131 473.4 379 66.5
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 4.8e-131 471.9 299 76.3
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 8.3e-131 471.1 380 65.3
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 3.1e-130 469.2 343 68.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 4.1e-130 468.8 379 66.5
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 5.4e-130 468.4 383 64.5
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.6e-129 466.8 329 71.4
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 2.7e-129 466.1 378 65.1
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 2.7e-129 466.1 369 64.8
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 5.9e-129 464.9 379 63.9
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.3e-128 463.8 328 71.3
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.7e-128 463.4 365 67.1
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.3e-128 463.0 385 64.4
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 3.8e-128 462.2 340 69.1
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.5e-128 461.5 303 74.9
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-127 460.7 380 65.3
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 9.5e-127 457.6 376 64.1
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.6e-126 456.8 323 68.7
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 3.6e-126 455.7 345 67.2
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 8.0e-126 454.5 338 69.8
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.0e-125 454.1 380 64.5
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.8e-125 453.4 393 60.8
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 5.2e-125 451.8 358 65.9
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 8.9e-125 451.1 385 64.2
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.2e-124 450.7 383 61.9
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.0e-124 449.9 373 62.7
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.0e-124 449.9 367 65.4
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.0e-124 449.9 349 65.6
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 4.4e-124 448.7 321 69.2
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 4.4e-124 448.7 321 69.2
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 9.8e-124 447.6 316 69.6
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.7e-123 446.8 369 61.2
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.2e-123 446.4 369 64.0
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 2.8e-123 446.0 382 62.6
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 3.7e-123 445.7 287 76.7
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 3.7e-123 445.7 337 68.5
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 4.9e-123 445.3 369 61.2
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 4.9e-123 445.3 304 72.4
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 8.3e-123 444.5 367 62.4
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.1e-122 444.1 303 71.0
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.4e-122 443.7 380 63.9
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.4e-122 443.7 299 72.2
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 3.1e-122 442.6 376 63.0
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.1e-122 442.2 310 70.6
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.4e-122 441.8 299 72.6
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.2e-121 440.7 303 71.0
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.0e-121 439.9 361 61.2
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 2.0e-121 439.9 374 63.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 5.9e-121 438.3 382 60.7
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.3e-120 437.2 307 70.7
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.3e-120 437.2 375 61.1
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 5.0e-120 435.3 346 65.0
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 6.6e-120 434.9 310 69.0
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 8.6e-120 434.5 367 61.0
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 3.3e-119 432.6 319 67.1
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 7.3e-119 431.4 337 65.3
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.8e-117 426.8 323 66.3
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 8.9e-117 424.5 385 60.5
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.3e-115 420.6 311 68.5
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.7e-115 420.2 348 61.8
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.7e-115 420.2 300 67.7
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 6.4e-115 418.3 434 54.1
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 2.4e-114 416.4 324 65.1
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 7.0e-114 414.8 341 61.9
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.4e-109 400.6 220 90.5
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 8.9e-109 397.9 327 60.2
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-108 397.5 343 60.6
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.6e-108 396.4 377 58.4
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.3e-107 394.0 249 77.5
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.1e-106 391.0 317 61.5
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.1e-103 380.9 275 67.3
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.1e-103 380.9 275 67.3
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.4e-101 374.0 321 61.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 6.2e-94 348.6 250 69.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 6.8e-93 345.1 281 60.1
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 2.6e-92 343.2 387 50.6
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.4e-92 342.8 302 57.3
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 5.4e-90 335.5 297 53.2
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.2e-89 334.3 298 52.0
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.6e-89 334.0 297 52.9
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 2.1e-89 333.6 297 61.6
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-88 330.5 297 52.5
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-88 330.1 291 52.6
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 8.7e-88 328.2 300 51.7
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-86 323.9 298 52.7
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.8e-86 323.2 294 60.2
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 4.7e-86 322.4 298 51.3
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.7e-86 322.4 296 51.4
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 4.7e-86 322.4 290 57.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 6.2e-86 322.0 298 51.7
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 8.1e-86 321.6 293 52.2
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.4e-85 320.9 298 52.0
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 2.4e-85 320.1 298 52.0
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 2.4e-85 320.1 299 52.5
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.1e-85 319.7 298 50.3
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.0e-85 318.2 297 51.9
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-84 317.8 298 51.7
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-84 317.4 297 51.9
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-84 317.4 297 51.9
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.0e-84 317.0 298 52.0
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.0e-84 317.0 297 50.8
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.6e-84 316.6 298 52.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.6e-84 316.6 298 52.3
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.3e-83 314.3 298 50.3
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.3e-83 314.3 299 52.2
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.7e-83 313.9 295 49.8
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 2.9e-83 313.2 299 52.8
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 3.8e-83 312.8 299 51.2
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 3.8e-83 312.8 296 50.7
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.8e-83 312.8 296 51.4
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 4.9e-83 312.4 299 52.5
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 6.4e-83 312.0 306 48.7
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.4e-83 312.0 298 51.7
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.4e-82 310.1 298 50.0
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 3.0e-80 303.1 377 50.7
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 5.1e-80 302.4 272 51.8
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 8.7e-80 301.6 297 49.8
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 3.6e-78 296.2 295 47.8
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 6.9e-77 292.0 297 48.8
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.8e-75 286.2 272 48.5
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 7.9e-73 278.5 299 49.5
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 3.3e-71 273.1 285 49.1
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-70 271.2 278 50.0
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 5.3e-69 265.8 351 41.0
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 4.6e-65 252.7 243 57.2
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.4e-61 241.1 245 49.4
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 3.0e-56 223.4 299 42.8
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-52 211.1 195 52.3
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-52 211.1 195 52.3
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.6e-52 210.3 219 47.9
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.1e-50 204.9 261 48.3
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 2.3e-48 197.2 190 56.8
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.2e-44 184.9 324 36.1
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 7.0e-37 159.1 148 51.4
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-36 157.9 127 52.0
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.8e-35 153.3 298 31.9
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-34 151.8 127 50.4
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-34 151.8 127 50.4
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.8e-29 134.4 81 81.5
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-29 134.0 110 50.0
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-28 131.0 157 45.9
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 3.7e-22 110.2 94 59.6
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 5.0e-19 99.8 300 28.3
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 3.8e-11 73.6 57 66.7


User provided reference genes

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