Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 2.5e-306 1054.7 555 100.0
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.5e-279 965.7 555 91.0
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 2.6e-279 964.9 555 90.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 1.4e-261 906.0 557 84.9
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 1.2e-247 859.8 561 81.1
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 5.9e-247 857.4 561 81.3
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 8.8e-243 843.6 561 80.2
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 1.4e-235 819.7 470 90.2
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 4.7e-228 794.7 564 74.8
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.0e-219 766.9 564 73.2
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 8.3e-217 757.3 564 72.3
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 7.8e-215 750.7 559 72.5
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.6e-210 735.7 566 69.4
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 4.9e-209 731.5 567 69.3
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 6.6e-206 721.1 560 68.6
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.8e-203 713.0 559 68.0
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 6.8e-203 711.1 563 68.2
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.5e-202 709.9 567 66.1
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 5.8e-202 708.0 561 66.1
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.3e-201 706.8 567 67.0
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 6.4e-201 704.5 567 66.8
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 8.3e-201 704.1 481 78.2
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 8.3e-201 704.1 561 67.4
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.9e-200 703.0 567 66.3
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 4.1e-200 701.8 564 66.8
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 9.2e-200 700.7 574 66.2
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.2e-199 700.3 557 67.7
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 2.7e-199 699.1 567 65.8
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.0e-198 695.7 561 66.0
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 8.6e-198 694.1 567 66.1
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 7.3e-197 691.0 565 65.1
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.5e-197 690.6 574 65.3
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.6e-196 689.9 574 65.2
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.6e-196 689.9 570 66.7
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 3.6e-196 688.7 564 64.9
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 4.7e-196 688.3 580 66.2
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.4e-195 686.0 571 65.5
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 5.2e-195 684.9 561 64.5
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.9e-195 684.1 574 64.8
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 8.9e-195 684.1 572 64.3
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 4.9e-193 678.3 564 65.6
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.9e-193 678.3 561 64.2
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 7.1e-192 674.5 561 62.6
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 1.6e-191 673.3 566 64.8
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.3e-190 670.2 572 63.8
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 6.6e-190 667.9 605 62.8
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.8e-188 662.5 566 62.9
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.8e-188 662.5 519 68.2
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 1.8e-187 659.8 570 63.3
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.8e-187 659.8 580 62.9
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 3.1e-187 659.1 572 63.8
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 5.2e-187 658.3 559 63.7
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 9.0e-187 657.5 567 62.4
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 9.0e-187 657.5 567 63.5
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 1.5e-186 656.8 547 66.0
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 3.4e-186 655.6 568 63.0
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 7.6e-186 654.4 567 61.9
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 1.7e-185 653.3 562 62.3
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 8.4e-185 651.0 566 61.3
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 8.4e-185 651.0 583 61.9
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 1.4e-184 650.2 560 63.9
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 7.1e-184 647.9 564 63.7
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 7.1e-184 647.9 561 62.6
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 9.3e-184 647.5 568 61.3
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 2.7e-183 646.0 566 60.8
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 2.7e-183 646.0 564 63.8
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 3.5e-183 645.6 566 60.8
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 3.5e-183 645.6 566 60.8
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.5e-183 645.6 568 61.6
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 4.6e-183 645.2 571 61.5
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.0e-182 642.5 559 62.4
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 3.9e-182 642.1 499 67.1
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 5.1e-182 641.7 566 60.6
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.1e-181 640.6 566 60.4
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 1.9e-181 639.8 566 60.8
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 5.6e-181 638.3 563 62.5
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.3e-180 637.1 566 60.6
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.6e-180 636.7 591 58.7
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 1.1e-179 634.0 504 66.1
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.8e-179 633.3 578 59.5
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 3.1e-179 632.5 564 62.4
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 6.9e-179 631.3 571 60.4
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 5.8e-178 628.2 559 61.2
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 9.9e-178 627.5 550 62.0
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 1.4e-176 623.6 581 60.6
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 1.3e-174 617.1 562 60.5
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 7.4e-173 611.3 566 58.8
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.8e-171 606.7 567 58.7
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 3.1e-171 605.9 640 56.2
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 2.8e-164 582.8 599 56.8
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 8.2e-164 581.3 576 57.3
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 6.5e-161 571.6 476 65.3
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 2.5e-160 569.7 503 62.6
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 4.2e-160 568.9 504 61.9
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.6e-159 567.0 565 59.3
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 7.9e-159 564.7 557 56.7
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 3.0e-158 562.8 464 65.3
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 8.7e-158 561.2 508 59.4
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 1.1e-149 534.3 543 56.9
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.3e-148 530.8 556 56.5
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 2.5e-144 516.5 567 53.8
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 4.8e-140 502.3 529 52.7
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.3e-137 494.2 570 49.3
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.7e-135 486.5 349 71.9
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.8e-132 476.5 513 51.9
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.2e-130 471.1 349 71.6
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 7.7e-130 468.4 580 51.4
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 2.9e-129 466.5 473 55.6
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 8.8e-126 454.9 340 70.0
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 2.0e-122 443.7 403 62.3
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 1.0e-121 441.4 512 50.6
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.0e-114 417.2 353 63.5
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 8.0e-111 405.2 480 49.4
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 2.6e-109 400.2 244 82.4
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 2.6e-109 400.2 244 82.4
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.8e-107 394.0 243 84.4
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 2.1e-103 380.6 414 53.1
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 4.0e-102 376.3 233 85.0
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.2e-98 364.8 233 77.7
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 2.6e-93 347.1 404 51.2
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.8e-93 345.9 279 64.2
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 7.5e-93 345.5 387 51.4
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 2.4e-91 340.5 422 50.9
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.1e-89 332.8 192 87.5
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 8.3e-84 315.5 509 40.5
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.6e-82 311.2 312 54.8
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 5.1e-81 306.2 389 48.6
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.3e-80 303.1 334 51.8
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 5.8e-77 292.7 579 34.7
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 2.9e-76 290.4 159 89.3
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.2e-71 275.0 376 46.8
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 7.3e-64 249.2 143 86.0
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.2e-59 233.8 143 84.6
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.0e-58 229.6 143 82.5
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 6.0e-58 229.6 460 37.0
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 7.4e-56 222.6 241 57.3
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 9.6e-56 222.2 134 85.8
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.0e-54 215.7 128 86.7
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-45 186.0 559 30.8
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 1.3e-39 168.7 497 28.8
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.3e-33 147.9 88 84.1
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.1e-30 139.0 91 76.9
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.2e-27 127.1 159 48.4
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 5.3e-22 110.2 534 27.7
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.0e-20 105.9 132 48.5
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.3e-20 105.5 257 30.7
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.3e-20 105.5 202 36.6
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.7e-20 105.1 171 41.5
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.2e-19 100.5 122 49.2
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.1e-18 98.2 254 29.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 5.2e-17 93.6 78 61.5
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.4e-16 89.7 52 84.6
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 3.1e-14 84.3 45 86.7
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 5.7e-08 63.5 201 28.9


User provided reference genes

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