Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 9.6e-203 709.9 350 100.0
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 7.8e-96 354.8 281 68.0
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 1.3e-85 320.9 277 63.2
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 4.3e-78 295.8 290 59.0
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 1.1e-73 281.2 298 57.0
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 2.5e-73 280.0 293 55.6
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 1.2e-72 277.7 306 53.3
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 3.0e-71 273.1 298 53.7
Psat0s1646g0240 Pisum sativum HOM05D007538 ORTHO05D009464 4.8e-69 265.8 141 94.3
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 2.6e-67 260.0 302 51.7
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 1.7e-66 257.3 298 51.0
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 7.1e-65 251.9 267 54.3
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 9.3e-65 251.5 312 48.4
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 9.3e-65 251.5 312 48.4
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 1.5e-51 207.6 310 43.2
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 1.7e-50 204.1 308 44.2
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 2.2e-50 203.8 304 43.4
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 1.4e-49 201.1 304 43.4
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 1.1e-46 191.4 312 41.3
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.5e-46 191.0 306 40.2
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 2.2e-45 187.2 306 39.5
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 4.8e-45 186.0 305 41.0
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 6.3e-45 185.7 294 40.1
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 1.8e-44 184.1 294 39.8
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 4.5e-43 179.5 303 39.9
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 4.5e-43 179.5 299 41.1
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 7.2e-41 172.2 301 39.9
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.6e-40 171.0 306 38.2
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 4.7e-40 169.5 301 39.5
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 6.1e-40 169.1 302 37.4
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 6.7e-39 165.6 302 38.1
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 8.8e-39 165.2 297 41.8
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 8.8e-39 165.2 230 44.3
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 2.0e-38 164.1 301 35.9
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 3.3e-38 163.3 323 36.2
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 2.8e-37 160.2 297 38.4
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 4.8e-37 159.5 317 37.2
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 2.4e-36 157.1 315 37.8
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 9.1e-36 155.2 330 34.5
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 1.2e-35 154.8 300 38.3
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 2.6e-35 153.7 299 41.1
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 4.5e-35 152.9 300 38.0
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 5.9e-35 152.5 250 41.6
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 2.9e-34 150.2 317 36.9
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 5.5e-33 146.0 306 37.6
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 2.1e-32 144.1 268 37.3
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 3.6e-32 143.3 291 38.8
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 6.1e-32 142.5 293 35.5
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.4e-31 141.4 286 36.0
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 1.8e-31 141.0 273 38.1
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 2.0e-30 137.5 254 37.4
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 7.5e-30 135.6 298 34.9
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 8.3e-29 132.1 242 36.0
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 3.1e-28 130.2 308 34.4
Actinidia01319 Actinidia chinensis HOM05D007538 ORTHO05D009464 5.3e-28 129.4 224 40.2
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 7.0e-28 129.0 333 32.7
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 9.1e-28 128.6 305 34.1
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 1.2e-27 128.3 307 33.6
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 2.0e-27 127.5 307 32.6
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 1.3e-26 124.8 285 36.1
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 9.4e-25 118.6 289 34.9
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 2.7e-24 117.1 331 33.2
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 1.8e-23 114.4 331 32.9
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 3.0e-23 113.6 300 32.7
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 1.2e-22 111.7 290 32.1
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 5.7e-22 109.4 305 32.8
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 9.8e-22 108.6 310 30.6
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 3.7e-21 106.7 294 33.0
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 3.7e-21 106.7 293 33.4
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 1.4e-20 104.8 294 32.7
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 4.1e-20 103.2 317 29.3
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 9.1e-20 102.1 338 29.3
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 4.5e-19 99.8 335 28.7
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 1.0e-18 98.6 283 33.2
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 2.3e-18 97.4 311 29.9
Ah.12g055490 Amaranthus hybridus HOM05D007538 ORTHO05D009464 3.8e-18 96.7 198 36.9
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 1.1e-17 95.1 296 31.1
HanXRQChr03g0083271 Helianthus annuus HOM05D007538 ORTHO05D009464 2.5e-17 94.0 263 31.6
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 6.1e-16 89.4 260 33.5
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 6.1e-16 89.4 207 32.4
Sed0002033 Sechium edule HOM05D007538 ORTHO05D009464 6.8e-15 85.9 297 29.6
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 1.2e-14 85.1 272 29.0
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 4.4e-14 83.2 320 27.2
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 5.7e-14 82.8 282 30.5
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 2.8e-13 80.5 205 31.2
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 2.8e-13 80.5 281 27.8
Psat3g184960 Pisum sativum HOM05D007538 ORTHO05D009464 1.2e-11 75.1 83 51.8
MBI04_g44375_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 1.6e-11 74.7 144 35.4
CAN.G1987.3 Capsicum annuum HOM05D007538 ORTHO05D009464 2.0e-11 74.3 272 31.6
unitig_22.g5510 Utricularia gibba HOM05D007538 ORTHO05D009464 4.5e-11 73.2 318 27.7
Cpa.g.sc208.8 Carica papaya HOM05D007538 ORTHO05D009464 7.8e-11 72.4 239 31.4
Zm00001eb251400 Zea mays HOM05D007538 ORTHO05D009464 6.6e-10 69.3 284 27.8
Medtr5g029290 Medicago truncatula HOM05D007538 ORTHO05D009464 6.8e-07 59.3 98 42.9
MBI04_g32200_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 2.6e-06 57.4 74 41.9


User provided reference genes

Program Settings