Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3154g0240 Pisum sativum HOM05D000001 ORTHO05D004044 3.7e-216 754.6 380 100.0
Psat0s3775g0160 Pisum sativum HOM05D000001 ORTHO05D004044 9.4e-204 713.4 380 96.1
Psat0s3154g0080 Pisum sativum HOM05D000001 ORTHO05D004044 1.8e-125 453.4 363 70.5
TPR.G38869 Trifolium pratense HOM05D000001 ORTHO05D004044 6.9e-122 441.4 380 65.5
Medtr1g014880 Medicago truncatula HOM05D000001 ORTHO05D004044 3.5e-118 429.1 388 65.5
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 1.3e-104 384.0 380 59.5
Glyma.17G219600 Glycine max HOM05D000001 ORTHO05D004044 1.1e-103 380.9 379 59.4
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 9.4e-103 377.9 403 53.8
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 1.2e-102 377.5 404 54.5
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 1.6e-102 377.1 381 59.1
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 4.7e-102 375.6 363 58.7
Lj5g0004443 Lotus japonicus HOM05D000001 ORTHO05D004044 3.9e-101 372.5 381 59.1
VMungo0647G0604 Vigna mungo HOM05D000001 ORTHO05D004044 9.7e-100 367.9 381 57.7
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 7.7e-97 358.2 406 51.7
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 1.7e-96 357.1 444 48.9
Lalb_Chr22g0349641 Lupinus albus HOM05D000001 ORTHO05D004044 2.9e-96 356.3 378 56.9
Psat6g024040 Pisum sativum HOM05D000001 ORTHO05D004044 5.0e-96 355.5 199 91.0
Lj1g0000975 Lotus japonicus HOM05D000001 ORTHO05D004044 8.5e-96 354.8 378 55.6
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 5.5e-95 352.1 406 51.0
VMungo1309G1461 Vigna mungo HOM05D000001 ORTHO05D004044 1.2e-94 350.9 405 51.1
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 4.7e-94 349.0 378 56.1
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 1.8e-93 347.1 405 50.6
Lalb_Chr11g0063391 Lupinus albus HOM05D000001 ORTHO05D004044 2.5e-87 326.6 379 50.7
Haze_18323 Corylus avellana HOM05D000001 ORTHO05D004044 1.2e-84 317.8 405 49.1
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 2.6e-84 316.6 363 51.5
Prupe.1G402100 Prunus persica HOM05D000001 ORTHO05D004044 2.6e-84 316.6 402 48.8
Ciclev10007851m.g Citrus clementina HOM05D000001 ORTHO05D004044 4.4e-84 315.8 381 50.9
Manes.16G087000 Manihot esculenta HOM05D000001 ORTHO05D004044 5.7e-84 315.5 384 49.7
Ca_13092_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004044 1.7e-83 313.9 200 81.0
FAN27G1566 Fragaria x ananassa HOM05D000001 ORTHO05D004044 2.2e-83 313.5 366 51.9
FvH4_2g30791 Fragaria vesca HOM05D000001 ORTHO05D004044 4.8e-83 312.4 366 51.6
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 1.1e-82 311.2 363 51.2
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 1.1e-82 311.2 406 48.0
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 4.1e-82 309.3 376 51.1
FAN24G2651 Fragaria x ananassa HOM05D000001 ORTHO05D004044 9.1e-82 308.1 377 49.6
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 2.0e-81 307.0 382 50.3
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 5.0e-80 302.4 379 49.1
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 8.5e-80 301.6 427 45.0
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 1.1e-79 301.2 384 48.7
CSS0022708 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 3.6e-78 296.2 380 50.0
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 3.6e-78 296.2 361 51.0
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 8.0e-78 295.0 405 46.2
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 8.0e-78 295.0 383 48.6
MD08G1046100 Malus domestica HOM05D000001 ORTHO05D004044 1.4e-77 294.3 378 47.6
Gohir.D05G039400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.3e-77 293.5 405 48.1
Gorai.009G039900 Gossypium raimondii HOM05D000001 ORTHO05D004044 2.3e-77 293.5 405 48.1
TWI34G0443 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 2.3e-77 293.5 380 47.6
Gohir.A05G037900 Gossypium hirsutum HOM05D000001 ORTHO05D004044 5.2e-77 292.4 405 47.9
CiPaw.16G067100 Carya illinoinensis HOM05D000001 ORTHO05D004044 8.8e-77 291.6 367 49.6
TWI32G1352 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 2.0e-76 290.4 403 45.9
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 9.8e-76 288.1 404 47.3
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 1.3e-75 287.7 364 49.2
TAR624G0865 Trochodendron aralioides HOM05D000001 ORTHO05D004044 4.8e-75 285.8 404 45.5
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 1.4e-74 284.3 380 48.2
TAR636G0641 Trochodendron aralioides HOM05D000001 ORTHO05D004044 1.4e-74 284.3 381 47.8
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 1.2e-73 281.2 381 46.5
Rhsim11G0001100 Rhododendron simsii HOM05D000001 ORTHO05D004044 1.6e-73 280.8 369 50.4
Sabra18G0045700 Salix brachista HOM05D000001 ORTHO05D004044 2.0e-73 280.4 402 45.8
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 1.3e-72 277.7 357 49.0
CsaV3_4G036160 Cucumis sativus L. HOM05D000001 ORTHO05D004044 1.7e-72 277.3 381 45.4
Duzib168G1373 Durio zibethinus HOM05D000001 ORTHO05D004044 3.8e-72 276.2 372 47.8
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 1.5e-71 274.2 379 46.2
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 1.2e-70 271.2 364 47.5
Aqoxy7G04098 Aquilegia oxysepala HOM05D000001 ORTHO05D004044 1.6e-70 270.8 363 48.8
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 2.8e-70 270.0 363 46.3
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 1.0e-69 268.1 379 45.1
Actinidia29292 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.4e-69 267.7 406 45.1
Thecc.09G065500 Theobroma cacao HOM05D000001 ORTHO05D004044 1.4e-69 267.7 368 47.3
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 4.0e-69 266.2 405 44.7
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 8.9e-69 265.0 405 44.7
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 2.0e-68 263.8 364 47.3
Sp4g06560 Schrenkiella parvula HOM05D000001 ORTHO05D004044 2.6e-68 263.5 378 44.2
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 3.4e-68 263.1 376 44.1
Carub.0004s0615 Capsella rubella HOM05D000001 ORTHO05D004044 3.4e-68 263.1 379 45.1
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 5.7e-68 262.3 405 44.2
CiPaw.15G090000 Carya illinoinensis HOM05D000001 ORTHO05D004044 7.5e-68 261.9 363 47.4
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 7.5e-68 261.9 409 44.5
ClCG05G015870 Citrullus lanatus HOM05D000001 ORTHO05D004044 1.7e-67 260.8 341 47.8
PGR142G0487 Punica granatum HOM05D000001 ORTHO05D004044 3.7e-67 259.6 368 47.0
Duzib187G1939 Durio zibethinus HOM05D000001 ORTHO05D004044 4.9e-67 259.2 365 47.1
Thhalv10001942m.g Eutrema salsugineum HOM05D000001 ORTHO05D004044 4.9e-67 259.2 369 44.7
AT2G26280 Arabidopsis thaliana HOM05D000001 ORTHO05D004044 1.8e-66 257.3 375 45.1
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 1.8e-66 257.3 401 44.6
PSO135G0765 Papaver somniferum HOM05D000001 ORTHO05D004044 1.8e-66 257.3 365 47.7
PSO724G0994 Papaver somniferum HOM05D000001 ORTHO05D004044 1.8e-66 257.3 364 47.5
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 1.8e-66 257.3 380 45.0
DCAR_003727 Daucus carota HOM05D000001 ORTHO05D004044 2.4e-66 256.9 400 42.2
Manes.03G056801 Manihot esculenta HOM05D000001 ORTHO05D004044 2.4e-66 256.9 386 44.0
TWI63G1385 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 9.2e-66 255.0 374 44.4
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 2.7e-65 253.4 381 44.9
Gohir.D13G195200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.7e-65 253.4 379 45.1
Gorai.013G221300 Gossypium raimondii HOM05D000001 ORTHO05D004044 2.7e-65 253.4 379 45.1
Nn8g38610 Nelumbo nucifera HOM05D000001 ORTHO05D004044 2.7e-65 253.4 331 48.3
AL4G18860 Arabidopsis lyrata HOM05D000001 ORTHO05D004044 5.9e-65 252.3 379 44.1
Duzib150G1238 Durio zibethinus HOM05D000001 ORTHO05D004044 5.9e-65 252.3 348 46.8
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 7.8e-65 251.9 380 45.0
SalBow1G0904 Salvia bowleyana HOM05D000001 ORTHO05D004044 3.9e-64 249.6 341 46.6
Gohir.A13G188300 Gossypium hirsutum HOM05D000001 ORTHO05D004044 4.3e-63 246.1 379 43.8
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 1.2e-62 244.6 365 46.0
CARHR115120 Cardamine hirsuta HOM05D000001 ORTHO05D004044 2.8e-62 243.4 367 42.2
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 6.1e-62 242.3 402 43.3
TAR626G1342 Trochodendron aralioides HOM05D000001 ORTHO05D004044 8.0e-62 241.9 372 42.5
AUR62020279 Chenopodium quinoa HOM05D000001 ORTHO05D004044 2.3e-61 240.4 413 38.7
Lj7C209T10 Lonicera japonica HOM05D000001 ORTHO05D004044 3.1e-61 240.0 434 41.5
AUR62037726 Chenopodium quinoa HOM05D000001 ORTHO05D004044 1.5e-60 237.7 343 43.4
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 1.7e-59 234.2 363 44.4
ECA236G1474 Erigeron canadensis HOM05D000001 ORTHO05D004044 2.9e-59 233.4 370 44.6
HanXRQChr03g0067161 Helianthus annuus HOM05D000001 ORTHO05D004044 1.1e-58 231.5 363 44.6
ECA240G1094 Erigeron canadensis HOM05D000001 ORTHO05D004044 2.4e-58 230.3 361 42.4
MBI19_g09929_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 3.2e-58 229.9 386 41.2
MBI19_g47982_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 4.1e-58 229.6 394 41.1
BcaB08g35273 Brassica carinata HOM05D000001 ORTHO05D004044 7.0e-58 228.8 357 42.3
Actinidia16899 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.2e-57 228.0 368 43.5
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 2.0e-57 227.3 365 45.2
Lsat_1_v5_gn_8_149721 Lactuca sativa HOM05D000001 ORTHO05D004044 2.7e-57 226.9 288 53.1
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 3.5e-57 226.5 306 46.4
unitig_32.g10913 Utricularia gibba HOM05D000001 ORTHO05D004044 3.9e-56 223.0 394 41.6
Actinidia39673 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.5e-55 221.1 363 45.2
Lsat_1_v5_gn_8_70460 Lactuca sativa HOM05D000001 ORTHO05D004044 2.1e-54 217.2 365 45.2
QL02p017294 Quercus lobata HOM05D000001 ORTHO05D004044 2.1e-54 217.2 298 46.0
Actinidia29353 Actinidia chinensis HOM05D000001 ORTHO05D004044 6.8e-53 212.2 362 43.1
A09p55320 Brassica napus HOM05D000001 ORTHO05D004044 2.6e-52 210.3 362 40.9
BraA09t40935Z Brassica rapa HOM05D000001 ORTHO05D004044 3.4e-52 209.9 362 40.9
EL10Ac2g02405 Beta vulgaris HOM05D000001 ORTHO05D004044 1.3e-51 208.0 403 38.0
Dinv41848 Davidia involucrata HOM05D000001 ORTHO05D004044 2.2e-51 207.2 327 44.3
SalBow4G2835 Salvia bowleyana HOM05D000001 ORTHO05D004044 2.2e-51 207.2 397 38.0
TAR667G0003 Trochodendron aralioides HOM05D000001 ORTHO05D004044 2.2e-51 207.2 300 44.3
ATR0598G100 Amborella trichopoda HOM05D000001 ORTHO05D004044 2.9e-51 206.8 392 37.0
unitig_4.g30334 Utricularia gibba HOM05D000001 ORTHO05D004044 4.9e-51 206.1 357 42.0
Hund25544 Selenicereus undatus HOM05D000001 ORTHO05D004044 6.4e-51 205.7 456 35.5
Potri.006G218900 Populus trichocarpa HOM05D000001 ORTHO05D004044 1.9e-50 204.1 198 53.0
C08p38250 Brassica napus HOM05D000001 ORTHO05D004044 2.4e-50 203.8 346 41.9
BolC8t51400H Brassica oleracea HOM05D000001 ORTHO05D004044 2.4e-50 203.8 346 41.9
HPP92_016599 Vanilla planifolia HOM05D000001 ORTHO05D004044 2.4e-50 203.8 360 39.4
CDE05G2793 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 7.0e-50 202.2 352 40.9
BcaC07g40830 Brassica carinata HOM05D000001 ORTHO05D004044 3.5e-49 199.9 365 40.5
CSS0007474 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 2.3e-48 197.2 299 43.1
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 7.3e-47 192.2 276 46.0
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 2.1e-46 190.7 276 45.7
HanXRQChr09g0248701 Helianthus annuus HOM05D000001 ORTHO05D004044 2.1e-46 190.7 300 44.7
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 1.2e-44 184.9 278 44.6
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 1.2e-44 184.9 278 44.6
SEGI_25644 Sequoiadendron giganteum HOM05D000001 ORTHO05D004044 3.2e-42 176.8 352 37.2
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 5.4e-42 176.0 327 39.4
Cpa.g.sc82.5 Carica papaya HOM05D000001 ORTHO05D004044 5.4e-42 176.0 256 47.3
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 9.2e-42 175.3 277 44.0
Migut.A00058 Erythranthe guttata HOM05D000001 ORTHO05D004044 9.2e-42 175.3 392 36.5
SGA_v2.0_scaffold20G09145 Striga asiatica HOM05D000001 ORTHO05D004044 2.3e-40 170.6 332 38.9
Sed0004805 Sechium edule HOM05D000001 ORTHO05D004044 5.1e-40 169.5 196 49.0
HPP92_011061 Vanilla planifolia HOM05D000001 ORTHO05D004044 1.5e-39 167.9 356 34.8
Oeu060162.1 Olea europaea HOM05D000001 ORTHO05D004044 2.5e-39 167.2 298 39.9
SHI28008 Sapria himalayana HOM05D000001 ORTHO05D004044 1.6e-38 164.5 292 41.1
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.5e-36 157.9 345 35.9
Gohir.A08G247200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.6e-36 157.1 341 38.7
vmacro00208 Vaccinium macrocarpon HOM05D000001 ORTHO05D004044 4.4e-36 156.4 690 27.4
Gohir.D08G268400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.7e-32 144.4 339 36.3
Sc06g0000110 Simmondsia chinensis HOM05D000001 ORTHO05D004044 8.7e-32 142.1 201 41.8
Gorai.004G286100 Gossypium raimondii HOM05D000001 ORTHO05D004044 3.3e-31 140.2 339 35.7
Zm00001eb373910 Zea mays HOM05D000001 ORTHO05D004044 3.3e-31 140.2 256 39.5
SMO356G0739 Selaginella moellendorffii HOM05D000001 ORTHO05D004044 9.6e-31 138.7 317 35.6
unitig_748.g8235 Utricularia gibba HOM05D000001 ORTHO05D004044 3.1e-29 133.7 198 43.9
Zm00001eb278590 Zea mays HOM05D000001 ORTHO05D004044 7.6e-28 129.0 318 33.3
Pp3c26_4880 Physcomitrium patens HOM05D000001 ORTHO05D004044 2.2e-27 127.5 256 39.8
Os02g0780550 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 3.2e-26 123.6 306 34.6
Nn6g35692 Nelumbo nucifera HOM05D000001 ORTHO05D004044 4.2e-26 123.2 320 31.9
Pp3c4_25250 Physcomitrium patens HOM05D000001 ORTHO05D004044 4.2e-26 123.2 257 38.9
CDE05G1886 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 1.1e-23 115.2 91 69.2
CSS0015944 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 1.5e-23 114.8 125 52.0
CBR_g37677 Chara braunii HOM05D000001 ORTHO05D004044 9.9e-20 102.1 272 32.7
AagrBONN_evm.TU.Sc2ySwM_117.1386 Anthoceros agrestis HOM05D000001 ORTHO05D004044 1.7e-19 101.3 307 31.9
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.2e-19 100.9 134 53.0
Zm00001eb411920 Zea mays HOM05D000001 ORTHO05D004044 4.6e-17 93.2 127 44.9
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 2.3e-16 90.9 177 39.5
Zm00001eb255250 Zea mays HOM05D004347 ORTHO05D005270 3.9e-16 90.1 91 57.1
CSS0016640 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 8.7e-16 89.0 103 51.5
CSS0041936 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 8.7e-16 89.0 103 51.5
Hma1.2p1_2610F.1_g325350 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 1.9e-15 87.8 65 70.8
MCO09G693 Micromonas commoda HOM05D000001 ORTHO05D004044 1.9e-15 87.8 261 30.3
Zm00001eb340250 Zea mays HOM05D000001 ORTHO05D004044 2.5e-15 87.4 87 58.6
Zm00001eb217260 Zea mays HOM05D000001 ORTHO05D004044 7.4e-15 85.9 186 38.2
CDE05G0380 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 2.6e-12 77.4 123 39.0
Oeu024205.1 Olea europaea HOM05D007843 ORTHO05D003639 1.3e-11 75.1 185 34.1
arahy.Tifrunner.gnm1.ann1.16TXUG Arachis hypogaea HOM05D000001 ORTHO05D004044 4.6e-09 66.6 64 57.8
Oeu024206.1 Olea europaea HOM05D000001 ORTHO05D004044 4.8e-06 56.6 102 38.2
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 6.2e-06 56.2 28 96.4
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 8.2e-06 55.8 131 34.4


User provided reference genes

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