Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 2.9e-192 675.2 391 100.0
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.5e-145 518.8 398 73.6
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.6e-126 456.8 403 68.0
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.8e-126 455.3 403 68.2
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 4.6e-121 438.7 399 66.2
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.5e-119 433.7 408 62.5
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 3.6e-118 429.1 379 70.4
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 9.0e-117 424.5 409 62.1
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.1e-113 413.3 392 61.7
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 5.1e-112 408.7 402 61.4
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 6.7e-112 408.3 405 61.7
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 8.1e-110 401.4 438 57.5
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.0e-107 394.4 388 59.3
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.3e-107 394.0 405 59.8
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.8e-107 392.5 388 58.0
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.5e-106 389.8 388 59.8
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 7.1e-106 388.3 400 58.8
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-105 386.7 379 60.9
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.5e-105 386.0 379 60.7
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.5e-105 386.0 379 60.7
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 6.0e-105 385.2 387 59.2
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 6.0e-105 385.2 397 58.2
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 7.9e-105 384.8 400 57.5
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 1.8e-104 383.6 304 71.1
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.9e-104 382.5 385 57.7
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 7.4e-103 378.3 413 56.4
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.6e-103 377.9 388 58.8
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 3.1e-101 372.9 429 54.8
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 9.0e-101 371.3 464 51.1
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 9.0e-101 371.3 398 56.0
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 3.4e-100 369.4 391 56.5
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 4.5e-100 369.0 402 56.5
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 5.9e-100 368.6 388 58.2
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 5.9e-100 368.6 401 56.1
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.4e-98 364.0 435 52.6
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 3.2e-98 362.8 488 51.4
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 5.5e-98 362.1 358 60.9
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 9.3e-98 361.3 414 55.3
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.6e-97 360.5 403 54.8
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.5e-97 359.4 364 59.3
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 3.5e-97 359.4 391 57.0
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 4.6e-97 359.0 403 54.6
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 6.1e-97 358.6 409 56.7
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 6.7e-96 355.1 409 55.0
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 5.7e-95 352.1 414 53.1
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 8.2e-94 348.2 394 56.3
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 3.1e-93 346.3 403 53.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.1e-93 346.3 403 53.8
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 2.6e-92 343.2 414 52.9
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 2.6e-92 343.2 413 55.0
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.5e-92 342.4 388 54.6
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.3e-91 340.9 406 54.2
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 2.2e-91 340.1 394 55.8
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.8e-91 339.3 409 53.8
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 3.8e-91 339.3 412 53.9
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 6.5e-91 338.6 400 55.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.5e-91 338.2 306 63.7
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 8.5e-91 338.2 392 55.1
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 8.5e-91 338.2 408 54.7
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 9.4e-90 334.7 424 55.0
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.2e-89 334.3 401 51.9
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 6.1e-89 332.0 478 50.6
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 2.3e-88 330.1 437 54.2
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 8.8e-88 328.2 416 50.2
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 8.8e-88 328.2 421 51.5
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.3e-86 324.3 435 53.3
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 3.7e-86 322.8 420 50.0
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.8e-85 320.5 407 51.8
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 2.4e-85 320.1 433 50.6
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 6.9e-85 318.5 440 52.7
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 1.2e-84 317.8 400 51.2
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 5.0e-83 312.4 473 48.6
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 5.0e-83 312.4 389 55.0
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.9e-82 310.5 402 49.8
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 6.7e-80 302.0 407 50.1
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 6.7e-80 302.0 464 47.0
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 6.7e-80 302.0 293 58.7
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 8.8e-80 301.6 471 46.9
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.5e-79 300.8 293 58.4
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.0e-79 300.4 471 45.2
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.6e-79 300.1 406 50.2
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.3e-78 297.7 412 50.2
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.2e-78 297.0 392 49.5
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.8e-77 293.9 397 48.1
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.4e-77 293.5 408 47.3
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.3e-75 287.7 480 42.3
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 2.2e-75 287.0 360 49.7
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 2.5e-74 283.5 372 50.5
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 3.2e-74 283.1 408 47.3
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 4.7e-73 279.3 393 47.6
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 8.0e-73 278.5 420 46.9
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.4e-72 277.7 413 46.7
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 2.3e-72 276.9 459 45.1
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 3.0e-72 276.6 483 41.2
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 4.0e-72 276.2 460 45.2
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 5.2e-72 275.8 454 43.2
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 6.7e-72 275.4 452 46.2
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 8.8e-72 275.0 461 42.5
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 8.8e-72 275.0 373 49.1
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.5e-71 274.2 456 46.3
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.5e-71 274.2 452 46.0
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.0e-71 273.9 388 46.1
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 2.6e-71 273.5 481 43.7
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 9.7e-71 271.6 401 47.4
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 6.3e-70 268.9 410 46.6
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.2e-68 264.6 419 46.8
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 2.0e-68 263.8 454 43.0
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 5.9e-68 262.3 364 47.5
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.0e-67 261.5 369 49.9
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 3.6e-65 253.1 355 46.8
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.2e-63 248.1 359 47.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 2.0e-63 247.3 418 44.3
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.8e-61 240.7 477 41.7
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.7e-60 236.9 349 46.4
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.7e-59 234.2 371 42.6
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.2e-59 233.8 378 48.9
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.9e-59 233.4 322 52.5
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 2.3e-56 223.8 390 44.4
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 4.0e-56 223.0 375 43.7
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 2.6e-55 220.3 450 41.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 4.4e-55 219.5 129 86.0
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 7.7e-52 208.8 287 48.4
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.9e-51 206.8 479 38.0
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 3.8e-51 206.5 245 51.4
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 6.1e-49 199.1 397 39.8
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 4.1e-45 186.4 386 39.4
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.9e-42 177.6 346 44.8
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 5.0e-35 152.9 97 83.5
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 4.0e-32 143.3 394 35.8
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.5e-31 141.4 395 35.2
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.7e-30 136.7 104 69.2
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.1e-25 120.9 76 81.6
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 3.4e-23 113.6 98 65.3
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.8e-22 110.2 157 43.3
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.7e-20 104.0 68 73.5
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 7.8e-20 102.4 66 75.8
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.0e-19 100.5 84 65.5
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.6e-19 99.4 67 67.2
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.1e-18 98.6 64 73.4
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.9e-18 97.8 64 71.9
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 4.3e-18 96.7 266 33.5
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.9e-16 89.4 58 72.4
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.5e-15 88.2 187 40.1
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 5.8e-15 86.3 374 30.2
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 5.8e-15 86.3 203 37.9
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 2.8e-09 67.4 93 46.2
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.5e-07 60.1 36 77.8


User provided reference genes

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