Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 3.9e-185 651.4 334 100.0
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 3.8e-148 528.5 339 82.6
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 2.4e-134 482.6 312 82.7
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 9.1e-118 427.6 360 68.1
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 7.7e-117 424.5 349 68.2
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 1.6e-114 416.8 355 66.5
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 1.6e-114 416.8 351 66.4
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 1.8e-113 413.3 355 66.5
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 1.3e-111 407.1 349 65.3
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 1.1e-110 404.1 348 66.1
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 2.4e-110 402.9 347 66.6
Ca_08329_v3 Cicer arietinum L. HOM05D007667 ORTHO05D008033 6.6e-84 315.1 242 73.6
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 5.9e-77 292.0 339 54.0
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 1.6e-74 283.9 369 50.9
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 5.2e-73 278.9 351 49.0
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 7.3e-67 258.5 373 48.5
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 2.3e-65 253.4 374 46.3
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 3.4e-64 249.6 292 54.5
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 6.2e-58 228.8 373 45.6
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 6.2e-58 228.8 363 44.6
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 2.6e-56 223.4 400 42.5
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 3.4e-56 223.0 364 45.1
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 1.6e-53 214.2 411 41.8
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 1.0e-52 211.5 404 42.1
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 8.6e-52 208.4 359 42.9
Lalb_Chr22g0358171 Lupinus albus HOM05D007667 ORTHO05D008033 1.1e-51 208.0 256 51.6
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 6.2e-50 202.2 367 44.1
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 3.1e-49 199.9 360 43.3
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 4.0e-49 199.5 281 46.3
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 2.6e-48 196.8 411 37.5
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 7.1e-46 188.7 354 38.7
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 6.0e-45 185.7 347 37.5
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 2.3e-44 183.7 376 38.0
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 3.0e-44 183.3 340 39.4
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 4.3e-43 179.5 407 37.3
MBI13_g29622_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 1.6e-42 177.6 391 38.4
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 2.1e-42 177.2 394 35.5
Sc13g0000730 Simmondsia chinensis HOM05D007667 ORTHO05D008033 2.1e-42 177.2 479 34.2
arahy.Tifrunner.gnm1.ann1.EU10QV Arachis hypogaea HOM05D007667 ORTHO05D008033 2.8e-42 176.8 178 59.6
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 1.8e-41 174.1 381 38.3
CsaV3_4G028970 Cucumis sativus L. HOM05D007667 ORTHO05D008033 1.2e-40 171.4 419 35.8
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 5.8e-40 169.1 361 38.5
ClCG04G005020 Citrullus lanatus HOM05D007667 ORTHO05D008033 7.6e-40 168.7 415 34.5
arahy.Tifrunner.gnm1.ann1.8XR3F9 Arachis hypogaea HOM05D007667 ORTHO05D008033 1.3e-39 167.9 178 59.0
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 3.8e-39 166.4 333 40.2
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 6.4e-39 165.6 244 44.3
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 8.4e-39 165.2 340 37.4
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 1.4e-38 164.5 413 36.1
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.2e-37 161.4 492 30.7
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 1.8e-36 157.5 396 34.8
Dinv02787 Davidia involucrata HOM05D007667 ORTHO05D008033 8.7e-36 155.2 255 47.5
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 1.1e-35 154.8 369 35.5
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 3.3e-35 153.3 392 36.2
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.6e-34 151.0 352 37.5
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 1.6e-34 151.0 374 36.4
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 5.3e-33 146.0 358 34.6
Prupe.7G023900 Prunus persica HOM05D007667 ORTHO05D008033 9.0e-33 145.2 243 44.0
Lalb_Chr22g0358161 Lupinus albus HOM05D007667 ORTHO05D008033 4.5e-32 142.9 102 65.7
EL10Ac3g07362 Beta vulgaris HOM05D007667 ORTHO05D008033 9.9e-32 141.7 380 33.7
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 1.3e-31 141.4 340 34.1
Nitab4.5_0002201g0030 Nicotiana tabacum HOM05D007667 ORTHO05D008033 4.9e-31 139.4 320 36.6
HPP92_012452 Vanilla planifolia HOM05D007667 ORTHO05D008033 8.4e-31 138.7 366 36.3
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 1.2e-29 134.8 402 32.1
arahy.Tifrunner.gnm1.ann1.8931ZB Arachis hypogaea HOM05D007667 ORTHO05D008033 2.7e-29 133.7 148 56.8
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 1.8e-28 131.0 480 27.7
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 3.9e-28 129.8 212 42.0
Sed0023543 Sechium edule HOM05D007667 ORTHO05D008033 1.1e-27 128.3 357 33.6
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 9.6e-27 125.2 253 36.4
arahy.Tifrunner.gnm1.ann1.3W78Z9 Arachis hypogaea HOM05D007667 ORTHO05D008033 1.6e-26 124.4 150 56.7
Lj1A1064T35 Lonicera japonica HOM05D007667 ORTHO05D008033 4.0e-25 119.8 258 38.0
PSO339G5815 Papaver somniferum HOM05D007667 ORTHO05D008033 5.8e-24 115.9 454 29.3
PSO384G0308 Papaver somniferum HOM05D007667 ORTHO05D008033 8.4e-23 112.1 461 28.4
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 1.4e-22 111.3 374 29.9
Cfa010473 Carpinus fangiana HOM05D007667 ORTHO05D008033 3.2e-22 110.2 155 47.7
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 3.5e-21 106.7 286 32.5
Solyc08g067000.3 Solanum lycopersicum HOM05D007667 ORTHO05D008033 1.0e-20 105.1 348 30.2
PGSC0003DMG400029088 Solanum tuberosum HOM05D007667 ORTHO05D008033 3.9e-20 103.2 322 31.4
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 1.1e-19 101.7 373 28.7
Actinidia37860 Actinidia chinensis HOM05D007667 ORTHO05D008033 1.5e-19 101.3 356 32.0
arahy.Tifrunner.gnm1.ann1.NYTL45 Arachis hypogaea HOM05D007667 ORTHO05D008033 2.1e-18 97.4 126 55.6
ATR1096G118 Amborella trichopoda HOM05D007667 ORTHO05D008033 2.8e-18 97.1 456 27.4
arahy.Tifrunner.gnm1.ann1.S7MPKE Arachis hypogaea HOM05D007667 ORTHO05D008033 4.8e-18 96.3 121 54.5
Sopen08g020950 Solanum pennellii HOM05D007667 ORTHO05D008033 8.2e-18 95.5 339 29.2
arahy.Tifrunner.gnm1.ann1.48UEJW Arachis hypogaea HOM05D007667 ORTHO05D008033 1.0e-15 88.6 100 55.0
arahy.Tifrunner.gnm1.ann1.W45WAC Arachis hypogaea HOM05D007667 ORTHO05D008033 3.8e-15 86.7 130 49.2
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 5.0e-15 86.3 364 28.0
CDE04G0047 Ceratophyllum demersum HOM05D007667 ORTHO05D008033 1.2e-13 81.6 325 26.8
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 2.1e-13 80.9 375 26.4
Cpa.g.sc33.176 Carica papaya HOM05D007667 ORTHO05D008033 2.7e-13 80.5 164 40.2
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.6e-13 79.7 146 40.4
Dinv21555 Davidia involucrata HOM05D007667 ORTHO05D008033 1.0e-12 78.6 135 43.7
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 1.3e-12 78.2 230 29.1
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 3.9e-12 76.6 376 26.1
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 3.9e-12 76.6 376 26.1
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 6.7e-12 75.9 369 26.3
HPP92_014340 Vanilla planifolia HOM05D007667 ORTHO05D008033 4.3e-11 73.2 183 35.0
Ah.04g150340 Amaranthus hybridus HOM05D003123 ORTHO05D003492 5.7e-11 72.8 132 39.4
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 7.4e-11 72.4 236 28.8
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 7.4e-11 72.4 230 28.7
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 9.7e-11 72.0 241 29.0
unitig_744.g24157 Utricularia gibba HOM05D007667 ORTHO05D008033 1.6e-10 71.2 191 35.1
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 2.2e-10 70.9 248 25.8
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 2.2e-10 70.9 248 25.8
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 2.8e-10 70.5 192 31.2
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 4.8e-10 69.7 240 27.9
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 8.2e-10 68.9 343 24.5
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 8.2e-10 68.9 343 24.5
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 1.4e-09 68.2 247 28.7
AUR62020980 Chenopodium quinoa HOM05D007667 ORTHO05D008033 1.4e-09 68.2 136 33.8
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 2.4e-09 67.4 380 25.3
MELO3C019169.2 Cucumis melo HOM05D007667 ORTHO05D008033 4.1e-09 66.6 168 29.2
MBI13_g08646_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 5.3e-09 66.2 66 53.0
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 6.9e-09 65.9 235 29.4
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 9.1e-09 65.5 348 23.9
FvH4_1g29470 Fragaria vesca HOM05D007667 ORTHO05D008033 2.0e-08 64.3 87 48.3
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 2.6e-08 63.9 89 40.4
MBI13_g31583_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 2.6e-08 63.9 92 46.7
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 7.7e-08 62.4 380 24.2
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 5.0e-07 59.7 231 24.7
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 5.0e-07 59.7 380 23.9
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 3.2e-06 57.0 393 23.4
MBI13_g08647_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 9.4e-06 55.5 107 36.4


User provided reference genes

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