Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3066g0200 Pisum sativum HOM05D000278 ORTHO05D015036 4.4e-52 207.6 99 100.0
Psat0s3066g0320 Pisum sativum HOM05D000278 ORTHO05D015036 4.4e-52 207.6 99 100.0
Psat4g058240 Pisum sativum HOM05D000278 ORTHO05D015036 8.2e-51 203.4 99 97.0
Medtr3g086330 Medicago truncatula HOM05D000278 ORTHO05D004130 5.0e-48 194.1 96 94.8
Psat5g092720 Pisum sativum HOM05D000278 ORTHO05D004130 5.0e-48 194.1 96 94.8
TPR.G20618 Trifolium pratense HOM05D000278 ORTHO05D004130 5.0e-48 194.1 96 94.8
CANSAT01G1557 Cannabis sativa HOM05D000278 ORTHO05D004130 1.9e-47 192.2 96 93.8
Ca_25126_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004130 1.9e-47 192.2 96 93.8
Lsat_1_v5_gn_8_155141 Lactuca sativa HOM05D000278 ORTHO05D004130 1.9e-47 192.2 96 92.7
ECA234G0587 Erigeron canadensis HOM05D000278 ORTHO05D004130 3.2e-47 191.4 96 92.7
QL03p056030 Quercus lobata HOM05D000278 ORTHO05D004130 3.2e-47 191.4 96 92.7
HanXRQChr17g0569181 Helianthus annuus HOM05D000278 ORTHO05D004130 5.5e-47 190.7 96 91.7
Hma1.2p1_0815F.1_g222810 Hydrangea macrophylla HOM05D000278 ORTHO05D004130 5.5e-47 190.7 96 92.7
PGSC0003DMG401028572 Solanum tuberosum HOM05D000278 ORTHO05D004130 5.5e-47 190.7 96 91.7
Lsat_1_v5_gn_4_2661 Lactuca sativa HOM05D000278 ORTHO05D004130 7.2e-47 190.3 96 91.7
Psat0s1548g0040 Pisum sativum HOM05D000278 ORTHO05D015036 7.2e-47 190.3 95 93.7
Sed0010599 Sechium edule HOM05D000278 ORTHO05D004130 7.2e-47 190.3 96 91.7
Lj6A817T55 Lonicera japonica HOM05D000278 ORTHO05D004130 9.4e-47 189.9 96 91.7
Lj6g0014415 Lotus japonicus HOM05D000278 ORTHO05D004130 9.4e-47 189.9 96 91.7
Phvul.001G256700 Phaseolus vulgaris HOM05D000278 ORTHO05D004130 9.4e-47 189.9 96 91.7
Prupe.1G240000 Prunus persica HOM05D000278 ORTHO05D004130 9.4e-47 189.9 96 91.7
ClCG08G017540 Citrullus lanatus HOM05D000278 ORTHO05D004130 1.2e-46 189.5 96 90.6
CsaV3_2G025080 Cucumis sativus L. HOM05D000278 ORTHO05D004130 1.2e-46 189.5 96 90.6
MD16G1106300 Malus domestica HOM05D000278 ORTHO05D004130 1.2e-46 189.5 96 91.7
Potri.008G182300 Populus trichocarpa HOM05D000278 ORTHO05D004130 1.2e-46 189.5 96 90.6
SalBow8G2690 Salvia bowleyana HOM05D000278 ORTHO05D004130 1.2e-46 189.5 96 90.6
TWI18G0594 Tripterygium wilfordii HOM05D000278 ORTHO05D004130 1.2e-46 189.5 96 90.6
TWI75G1086 Tripterygium wilfordii HOM05D000278 ORTHO05D004130 1.2e-46 189.5 96 90.6
Manes.12G019200 Manihot esculenta HOM05D000278 ORTHO05D004130 1.6e-46 189.1 96 90.6
EL10As2g23192 Beta vulgaris HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
CSS0034236 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
CiPaw.05G176300 Carya illinoinensis HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
MELO3C010705.2 Cucumis melo HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Dinv11027 Davidia involucrata HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Dinv14759 Davidia involucrata HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Eucgr.B03239 Eucalyptus grandis HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Manes.13G019600 Manihot esculenta HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Nitab4.5_0000041g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Nitab4.5_0012079g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Oeu049171.1 Olea europaea HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 89.6
Peaxi162Scf00128g00627 Petunia axillaris HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Solyc05g013990.3 Solanum lycopersicum HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Sopen05g008940 Solanum pennellii HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
THA.LOC104825542 Tarenaya hassleriana HOM05D000278 ORTHO05D004130 2.1e-46 188.7 96 90.6
Actinidia08112 Actinidia chinensis HOM05D000278 ORTHO05D004130 2.7e-46 188.3 96 90.6
Actinidia15123 Actinidia chinensis HOM05D000278 ORTHO05D004130 2.7e-46 188.3 96 89.6
MD13G1106100 Malus domestica HOM05D000278 ORTHO05D004130 2.7e-46 188.3 96 90.6
Cc11_g16190 Coffea canephora HOM05D000278 ORTHO05D004130 3.6e-46 188.0 96 89.6
Psat0s3108g0080 Pisum sativum HOM05D000278 ORTHO05D015036 3.6e-46 188.0 95 91.6
Rhsim08G0045300 Rhododendron simsii HOM05D000278 ORTHO05D004130 3.6e-46 188.0 96 89.6
arahy.Tifrunner.gnm1.ann1.W00XVX Arachis hypogaea HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
BcaC05g26712 Brassica carinata HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
Cfa009265 Carpinus fangiana HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
AUR62005529 Chenopodium quinoa HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
AUR62024208 Chenopodium quinoa HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
DCAR_007030 Daucus carota HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
Hma1.2p1_0079F.1_g041300 Hydrangea macrophylla HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
PGR102G1580 Punica granatum HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
Sc04g0009780 Simmondsia chinensis HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
GSVIVG01000590001 Vitis vinifera HOM05D000278 ORTHO05D004130 4.7e-46 187.6 96 89.6
Atru.chr11.2192 Acer truncatum HOM05D000278 ORTHO05D004130 6.1e-46 187.2 96 90.6
arahy.Tifrunner.gnm1.ann1.K5BW40 Arachis hypogaea HOM05D000278 ORTHO05D004130 6.1e-46 187.2 96 89.6
Cpa.g.sc33.88 Carica papaya HOM05D000278 ORTHO05D004130 6.1e-46 187.2 96 88.5
Ciclev10031191m.g Citrus clementina HOM05D000278 ORTHO05D004130 6.1e-46 187.2 96 89.6
Haze_12299 Corylus avellana HOM05D000278 ORTHO05D004130 6.1e-46 187.2 96 89.6
VMungo1383G1502 Vigna mungo HOM05D000278 ORTHO05D004130 6.1e-46 187.2 96 89.6
Actinidia37459 Actinidia chinensis HOM05D000278 ORTHO05D004130 8.0e-46 186.8 96 88.5
Migut.K00638 Erythranthe guttata HOM05D000278 ORTHO05D004130 8.0e-46 186.8 96 89.6
Glyma.11G244700 Glycine max HOM05D000278 ORTHO05D004130 8.0e-46 186.8 96 89.6
Glyma.18G012400 Glycine max HOM05D000278 ORTHO05D004130 8.0e-46 186.8 96 89.6
AL1G40440 Arabidopsis lyrata HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
AT1G24510 Arabidopsis thaliana HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Carub.0001s2560 Capsella rubella HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
CAN.G371.65 Capsicum annuum HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
CARHR026610 Cardamine hirsuta HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
COL.COLO4_23539 Corchorus olitorius HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Duzib268G0205 Durio zibethinus HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Gohir.A01G157200 Gossypium hirsutum HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Gohir.D01G153200 Gossypium hirsutum HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Gohir.D12G150900 Gossypium hirsutum HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Gorai.002G189700 Gossypium raimondii HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Gorai.008G162400 Gossypium raimondii HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Lalb_Chr01g0021371 Lupinus albus HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Sp1g23280 Schrenkiella parvula HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
SGA_v2.0_scaffold87G27108 Striga asiatica HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 89.6
Thecc.02G267800 Theobroma cacao HOM05D000278 ORTHO05D004130 1.0e-45 186.4 96 88.5
Aa31LG4G12290 Aethionema arabicum HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
Aa31LG7G9530 Aethionema arabicum HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
Carub.0002s1419 Capsella rubella HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
FvH4_5g28870 Fragaria vesca HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
FAN04G3081 Fragaria x ananassa HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
FAN08G2630 Fragaria x ananassa HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
FAN13G1794 Fragaria x ananassa HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
FAN18G3434 Fragaria x ananassa HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
Lalb_Chr19g0127401 Lupinus albus HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 89.6
RcHm_v2.0_Chr4g0432301 Rosa chinensis HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
SEGI_03361 Sequoiadendron giganteum HOM05D000278 ORTHO05D004130 1.4e-45 186.0 96 88.5
Ah.02g130390 Amaranthus hybridus HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 89.6
BcaB03g12057 Brassica carinata HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
BcaB03g14007 Brassica carinata HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
BcaC01g01645 Brassica carinata HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
BcaC05g26520 Brassica carinata HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
BcaC06g35255 Brassica carinata HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
A07p12210 Brassica napus HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
A08p26570 Brassica napus HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
A09p38830 Brassica napus HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
C03p73450 Brassica napus HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
C07p18170 Brassica napus HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
BolC3t19640H Brassica oleracea HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
BolC5t31296H Brassica oleracea HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
BolC7t42328H Brassica oleracea HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
BraA07t29005Z Brassica rapa HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
BraA09t39390Z Brassica rapa HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
Thhalv10007324m.g Eutrema salsugineum HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
Nn3g16164 Nelumbo nucifera HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 89.6
Nn3g16624 Nelumbo nucifera HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 89.6
Potri.010G051700 Populus trichocarpa HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
THA.LOC104807780 Tarenaya hassleriana HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 88.5
TAR622G1111 Trochodendron aralioides HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 89.6
GSVIVG01020856001 Vitis vinifera HOM05D000278 ORTHO05D004130 1.8e-45 185.7 96 89.6
MSTRG.7958 Avicennia marina HOM05D000278 ORTHO05D004130 2.3e-45 185.3 96 88.5
MSTRG.13335 Avicennia marina HOM05D000278 ORTHO05D004130 3.0e-45 184.9 96 88.5
CDE02G0970 Ceratophyllum demersum HOM05D000278 ORTHO05D004130 3.0e-45 184.9 96 88.5
Gorai.009G334400 Gossypium raimondii HOM05D000278 ORTHO05D004130 3.0e-45 184.9 96 87.5
MBI10_g17801_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004130 3.0e-45 184.9 96 89.6
Os06g0562600 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004130 3.0e-45 184.9 96 89.6
Aqoxy3G01361 Aquilegia oxysepala HOM05D000278 ORTHO05D004130 4.0e-45 184.5 96 88.5
Duzib248G0682 Durio zibethinus HOM05D000278 ORTHO05D004130 4.0e-45 184.5 96 87.5
Migut.E00224 Erythranthe guttata HOM05D000278 ORTHO05D004130 4.0e-45 184.5 96 87.5
Mapoly0051s0088 Marchantia polymorpha HOM05D000278 ORTHO05D004130 4.0e-45 184.5 96 88.5
Hund25414 Selenicereus undatus HOM05D000278 ORTHO05D004130 4.0e-45 184.5 96 88.5
Ah.03g133570 Amaranthus hybridus HOM05D000278 ORTHO05D004130 5.2e-45 184.1 96 88.5
Nn4g22514 Nelumbo nucifera HOM05D000278 ORTHO05D004130 5.2e-45 184.1 96 88.5
TAR629G3233 Trochodendron aralioides HOM05D000278 ORTHO05D004130 5.2e-45 184.1 96 88.5
CDE09G0295 Ceratophyllum demersum HOM05D000278 ORTHO05D004130 6.8e-45 183.7 96 87.5
Lalb_Chr03g0039791 Lupinus albus HOM05D000278 ORTHO05D004130 8.8e-45 183.3 96 88.5
PSO017G1560 Papaver somniferum HOM05D000278 ORTHO05D004130 8.8e-45 183.3 96 88.5
PSO478G4577 Papaver somniferum HOM05D000278 ORTHO05D004130 8.8e-45 183.3 96 88.5
Hund06050 Selenicereus undatus HOM05D000278 ORTHO05D004130 8.8e-45 183.3 96 86.5
HPP92_001208 Vanilla planifolia HOM05D000278 ORTHO05D004130 8.8e-45 183.3 96 87.5
C05p25680 Brassica napus HOM05D000278 ORTHO05D004130 1.2e-44 183.0 96 87.5
SMO339G0030 Selaginella moellendorffii HOM05D000278 ORTHO05D004130 1.2e-44 183.0 96 88.5
Zm00001eb298950 Zea mays HOM05D000278 ORTHO05D004130 1.5e-44 182.6 96 87.5
Gohir.A05G311900 Gossypium hirsutum HOM05D000278 ORTHO05D004130 2.0e-44 182.2 96 85.4
Sabra08G0138800 Salix brachista HOM05D000278 ORTHO05D004130 2.0e-44 182.2 104 83.7
Zm00001eb118030 Zea mays HOM05D000278 ORTHO05D004130 2.0e-44 182.2 96 87.5
Pp3c20_23570 Physcomitrium patens HOM05D000278 ORTHO05D004130 2.6e-44 181.8 96 87.5
ATR0824G281 Amborella trichopoda HOM05D000278 ORTHO05D004130 3.4e-44 181.4 96 88.5
Aqoxy3G00663 Aquilegia oxysepala HOM05D000278 ORTHO05D004130 3.4e-44 181.4 96 87.5
Sabra10G0018400 Salix brachista HOM05D000278 ORTHO05D004130 3.4e-44 181.4 96 86.5
unitig_22.g5528 Utricularia gibba HOM05D000278 ORTHO05D004130 3.4e-44 181.4 96 86.5
Gohir.A12G146300 Gossypium hirsutum HOM05D000278 ORTHO05D004130 5.7e-44 180.6 96 86.5
Gohir.D05G312900 Gossypium hirsutum HOM05D000278 ORTHO05D004130 9.8e-44 179.9 96 85.4
Aqoxy2G01992 Aquilegia oxysepala HOM05D000278 ORTHO05D004130 2.2e-43 178.7 96 85.4
Oeu004469.1 Olea europaea HOM05D000278 ORTHO05D004130 6.3e-43 177.2 91 90.1
CBR_g40771 Chara braunii HOM05D000278 ORTHO05D004130 8.3e-43 176.8 96 84.4
Psat5g136880 Pisum sativum HOM05D000278 ORTHO05D015036 8.3e-43 176.8 97 87.6
vmacro16157 Vaccinium macrocarpon HOM05D000278 ORTHO05D004130 8.3e-43 176.8 117 73.5
SalBow2G1192 Salvia bowleyana HOM05D000278 ORTHO05D004130 3.1e-42 174.9 90 90.0
TAR374G0849 Trochodendron aralioides HOM05D000278 ORTHO05D004130 3.1e-42 174.9 91 90.1
Thhalv10019724m.g Eutrema salsugineum HOM05D000278 ORTHO05D004130 9.1e-42 173.3 96 82.3
PRCOL_00003659 Prasinoderma coloniale HOM05D000278 ORTHO05D004130 3.5e-41 171.4 96 81.2
MCO07G493 Micromonas commoda HOM05D000278 ORTHO05D004130 1.2e-38 162.9 96 77.1
Psat2g113120 Pisum sativum HOM05D000278 ORTHO05D015036 1.2e-38 162.9 89 89.9
Cfa001637 Carpinus fangiana HOM05D000278 ORTHO05D004130 2.0e-36 155.6 96 74.0
Cre03.g156750 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004130 7.5e-36 153.7 96 71.9
Haze_26958 Corylus avellana HOM05D000278 ORTHO05D004130 5.4e-34 147.5 96 68.8
Psat1g051040 Pisum sativum HOM05D000278 ORTHO05D015036 1.4e-29 132.9 67 92.5
Lj3C1063G7 Lonicera japonica HOM05D000278 ORTHO05D004130 3.4e-28 128.3 97 66.0
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 5.7e-28 127.5 74 83.8
CAN.G658.3 Capsicum annuum HOM05D000278 ORTHO05D015036 7.5e-28 127.1 69 85.5
unitig_8.g3932 Utricularia gibba HOM05D000278 ORTHO05D004130 8.0e-22 107.1 54 87.0
CAN.G44.2 Capsicum annuum HOM05D000278 ORTHO05D015036 3.1e-21 105.1 69 72.5
BraA08t34609Z Brassica rapa HOM05D000278 ORTHO05D004130 2.4e-18 95.5 42 95.2
GSVIVG01025705001 Vitis vinifera HOM05D000278 ORTHO05D015036 1.6e-17 92.8 67 65.7
Nitab4.5_0000669g0270 Nicotiana tabacum HOM05D000278 ORTHO05D004130 2.5e-15 85.5 82 56.1
CAN.G629.1 Capsicum annuum HOM05D000278 ORTHO05D004130 5.6e-15 84.3 78 55.1
Solyc04g045410.3 Solanum lycopersicum HOM05D000278 ORTHO05D004130 6.2e-14 80.9 52 73.1
Aqoxy7G01856 Aquilegia oxysepala HOM05D000278 ORTHO05D015324 1.1e-13 80.1 36 91.7
HanXRQChr16g0504091 Helianthus annuus HOM05D000278 ORTHO05D036348 6.4e-11 70.9 37 83.8
PSO541G5146 Papaver somniferum HOM05D000278 ORTHO05D015036 4.1e-10 68.2 69 55.1
AL2G26480 Arabidopsis lyrata HOM05D000278 ORTHO05D004130 3.9e-08 61.6 28 89.3


User provided reference genes

Program Settings