Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2993g0080 Pisum sativum HOM05D003488 ORTHO05D022332 4.0e-40 167.5 79 100.0
Psat0s2993g0200 Pisum sativum HOM05D003488 ORTHO05D004214 1.7e-30 135.6 67 97.0
Lalb_Chr01g0004851 Lupinus albus HOM05D003488 ORTHO05D004214 1.6e-28 129.0 76 84.2
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 4.6e-28 127.5 76 82.9
arahy.Tifrunner.gnm1.ann1.D6PK9F Arachis hypogaea HOM05D003488 ORTHO05D004214 4.6e-28 127.5 76 82.9
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 4.6e-28 127.5 76 82.9
Medtr4g053260 Medicago truncatula HOM05D003488 ORTHO05D004214 4.6e-28 127.5 67 91.0
Phvul.011G093800 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 4.6e-28 127.5 76 84.2
Glyma.11G183600 Glycine max HOM05D003488 ORTHO05D004214 6.0e-28 127.1 76 84.2
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.0e-27 126.3 67 89.6
Phvul.011G094000 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 1.0e-27 126.3 76 82.9
Glyma.12G088900 Glycine max HOM05D003488 ORTHO05D004214 3.0e-27 124.8 76 82.9
TPR.G17200 Trifolium pratense HOM05D003488 ORTHO05D004214 3.9e-27 124.4 67 89.6
VMungo1127G1058 Vigna mungo HOM05D003488 ORTHO05D004214 6.6e-27 123.6 76 81.6
CSS0019661 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 7.3e-26 120.2 77 74.0
Cpa.g.sc1448.1 Carica papaya HOM05D003488 ORTHO05D004214 9.6e-26 119.8 76 76.3
COL.COLO4_19885 Corchorus olitorius HOM05D003488 ORTHO05D004214 2.1e-25 118.6 76 75.0
Gohir.A07G110300 Gossypium hirsutum HOM05D003488 ORTHO05D004214 3.6e-25 117.9 76 73.7
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 3.6e-25 117.9 67 82.1
Lalb_Chr19g0136491 Lupinus albus HOM05D003488 ORTHO05D022332 3.6e-25 117.9 63 88.9
Duzib168G1363 Durio zibethinus HOM05D003488 ORTHO05D004214 8.1e-25 116.7 76 73.7
Gohir.D07G113900 Gossypium hirsutum HOM05D003488 ORTHO05D004214 1.1e-24 116.3 76 72.4
Gorai.001G122200 Gossypium raimondii HOM05D003488 ORTHO05D004214 1.1e-24 116.3 76 72.4
QL01p012332 Quercus lobata HOM05D003488 ORTHO05D004214 1.1e-24 116.3 67 80.6
Aqoxy4G02784 Aquilegia oxysepala HOM05D003488 ORTHO05D004214 1.4e-24 115.9 76 71.1
TWI31G0838 Tripterygium wilfordii HOM05D003488 ORTHO05D004214 1.4e-24 115.9 76 73.7
Thecc.09G284200 Theobroma cacao HOM05D003488 ORTHO05D004214 2.4e-24 115.2 76 72.4
Rhsim01G0205200 Rhododendron simsii HOM05D003488 ORTHO05D004214 3.1e-24 114.8 77 71.4
GSVIVG01036133001 Vitis vinifera HOM05D003488 ORTHO05D004214 4.0e-24 114.4 77 71.4
TAR633G2222 Trochodendron aralioides HOM05D003488 ORTHO05D004214 1.2e-23 112.8 67 79.1
Gohir.A09G095500 Gossypium hirsutum HOM05D003488 ORTHO05D004214 1.5e-23 112.5 76 69.7
Manes.11G161600 Manihot esculenta HOM05D003488 ORTHO05D004214 2.0e-23 112.1 76 71.1
PSO384G1288 Papaver somniferum HOM05D003488 ORTHO05D004214 2.0e-23 112.1 76 72.4
Ciclev10028521m.g Citrus clementina HOM05D003488 ORTHO05D004214 2.6e-23 111.7 67 79.1
Gohir.D09G095200 Gossypium hirsutum HOM05D003488 ORTHO05D004214 4.4e-23 110.9 76 68.4
Gorai.006G111900 Gossypium raimondii HOM05D003488 ORTHO05D004214 4.4e-23 110.9 76 68.4
Lj1P237T11 Lonicera japonica HOM05D003488 ORTHO05D004214 4.4e-23 110.9 81 66.7
Nn2g14149 Nelumbo nucifera HOM05D003488 ORTHO05D004214 4.4e-23 110.9 74 71.6
Potri.009G164200 Populus trichocarpa HOM05D003488 ORTHO05D004214 4.4e-23 110.9 76 69.7
Sabra04G0137300 Salix brachista HOM05D003488 ORTHO05D004214 5.8e-23 110.5 76 67.1
ATR0776G025 Amborella trichopoda HOM05D003488 ORTHO05D004214 7.6e-23 110.2 67 76.1
Nn6g34912 Nelumbo nucifera HOM05D003488 ORTHO05D004214 1.7e-22 109.0 76 68.4
PSO339G0354 Papaver somniferum HOM05D003488 ORTHO05D004214 1.7e-22 109.0 76 71.1
AUR62009763 Chenopodium quinoa HOM05D003488 ORTHO05D004214 2.2e-22 108.6 76 69.7
Manes.04G004000 Manihot esculenta HOM05D003488 ORTHO05D004214 2.2e-22 108.6 67 76.1
Potri.004G203300 Populus trichocarpa HOM05D003488 ORTHO05D004214 2.2e-22 108.6 66 74.2
Atru.chr3.3255 Acer truncatum HOM05D003488 ORTHO05D004214 2.9e-22 108.2 67 76.1
Hund18755 Selenicereus undatus HOM05D003488 ORTHO05D004214 6.4e-22 107.1 76 68.4
Dinv31679 Davidia involucrata HOM05D003488 ORTHO05D004214 8.4e-22 106.7 77 68.8
Dinv29477 Davidia involucrata HOM05D003488 ORTHO05D004214 1.1e-21 106.3 61 75.4
MSTRG.26643 Avicennia marina HOM05D003488 ORTHO05D004214 1.4e-21 105.9 77 64.9
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 1.9e-21 105.5 76 67.1
DCAR_013382 Daucus carota HOM05D003488 ORTHO05D004214 2.4e-21 105.1 77 66.2
Oeu009221.1 Olea europaea HOM05D003488 ORTHO05D004214 3.2e-21 104.8 77 64.9
TPR.G21934 Trifolium pratense HOM05D003488 ORTHO05D004214 3.2e-21 104.8 76 67.1
Dinv21216 Davidia involucrata HOM05D003488 ORTHO05D004214 4.2e-21 104.4 77 66.2
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 4.2e-21 104.4 76 67.1
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 4.2e-21 104.4 74 66.2
Nitab4.5_0000755g0230 Nicotiana tabacum HOM05D003488 ORTHO05D004214 4.2e-21 104.4 72 68.1
Nitab4.5_0013628g0020 Nicotiana tabacum HOM05D003488 ORTHO05D004214 4.2e-21 104.4 72 68.1
Hma1.2p1_0084F.1_g043700 Hydrangea macrophylla HOM05D003488 ORTHO05D004214 5.4e-21 104.0 77 66.2
CSS0032778 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 7.1e-21 103.6 76 65.8
TPR.G11390 Trifolium pratense HOM05D003488 ORTHO05D004214 7.1e-21 103.6 74 64.9
Actinidia31274 Actinidia chinensis HOM05D003488 ORTHO05D004214 9.3e-21 103.2 76 65.8
AUR62036179 Chenopodium quinoa HOM05D003488 ORTHO05D022332 1.2e-20 102.8 72 70.8
VMungo1383G0237 Vigna mungo HOM05D003488 ORTHO05D004214 1.2e-20 102.8 76 65.8
Peaxi162Scf00003g00057 Petunia axillaris HOM05D003488 ORTHO05D004214 1.6e-20 102.4 72 66.7
BcaB03g15209 Brassica carinata HOM05D003488 ORTHO05D004214 2.1e-20 102.1 76 63.2
Medtr1g060040 Medicago truncatula HOM05D003488 ORTHO05D004214 3.5e-20 101.3 76 61.8
Sopen11g027050 Solanum pennellii HOM05D003488 ORTHO05D004214 3.5e-20 101.3 72 65.3
BcaC08g46148 Brassica carinata HOM05D003488 ORTHO05D004214 4.6e-20 100.9 76 61.8
A07p33820 Brassica napus HOM05D003488 ORTHO05D004214 4.6e-20 100.9 76 61.8
C06p43110 Brassica napus HOM05D003488 ORTHO05D004214 4.6e-20 100.9 76 61.8
CARHR059640 Cardamine hirsuta HOM05D003488 ORTHO05D004214 4.6e-20 100.9 76 61.8
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 4.6e-20 100.9 76 65.8
Psat6g013800 Pisum sativum HOM05D003488 ORTHO05D004214 4.6e-20 100.9 76 64.5
SEGI_25159 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 4.6e-20 100.9 70 67.1
Eucgr.B03854 Eucalyptus grandis HOM05D003488 ORTHO05D004214 6.0e-20 100.5 76 64.5
Psat4g110920 Pisum sativum HOM05D003488 ORTHO05D004214 6.0e-20 100.5 76 64.5
Rhsim03G0075900 Rhododendron simsii HOM05D003488 ORTHO05D004214 6.0e-20 100.5 76 65.8
Os01g0859600 Oryza sativa ssp. japonica HOM05D003488 ORTHO05D004214 7.8e-20 100.1 76 63.2
SGA_v2.0_scaffold13G06728 Striga asiatica HOM05D003488 ORTHO05D004214 7.8e-20 100.1 77 62.3
BolC6t39128H Brassica oleracea HOM05D003488 ORTHO05D004214 1.0e-19 99.8 76 61.8
Cc06_g05690 Coffea canephora HOM05D003488 ORTHO05D004214 1.0e-19 99.8 77 61.0
Lj3A997T49 Lonicera japonica HOM05D003488 ORTHO05D004214 1.0e-19 99.8 77 63.6
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 1.0e-19 99.8 76 68.4
Sopen10g032950 Solanum pennellii HOM05D003488 ORTHO05D004214 1.0e-19 99.8 77 59.7
PGSC0003DMG400028258 Solanum tuberosum HOM05D003488 ORTHO05D004214 1.0e-19 99.8 77 59.7
EL10Ac7g16924 Beta vulgaris HOM05D003488 ORTHO05D004214 1.3e-19 99.4 76 64.5
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 1.3e-19 99.4 76 67.1
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 1.3e-19 99.4 76 64.5
Ca_08999_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.7e-19 99.0 67 67.2
ClCG04G010010 Citrullus lanatus HOM05D003488 ORTHO05D004214 1.7e-19 99.0 67 67.2
MELO3C024542.2 Cucumis melo HOM05D003488 ORTHO05D004214 1.7e-19 99.0 67 67.2
CsaV3_6G040650 Cucumis sativus L. HOM05D003488 ORTHO05D004214 1.7e-19 99.0 67 67.2
MBI17_g08366_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.7e-19 99.0 58 79.3
Nitab4.5_0000963g0070 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.7e-19 99.0 77 59.7
Psat3g033640 Pisum sativum HOM05D003488 ORTHO05D004214 1.7e-19 99.0 76 61.8
HPP92_003226 Vanilla planifolia HOM05D003488 ORTHO05D004214 1.7e-19 99.0 76 64.5
Migut.J01046 Erythranthe guttata HOM05D003488 ORTHO05D004214 2.3e-19 98.6 77 64.9
Thhalv10018615m.g Eutrema salsugineum HOM05D003488 ORTHO05D004214 2.3e-19 98.6 76 60.5
Manes.09G056000 Manihot esculenta HOM05D003488 ORTHO05D004214 2.3e-19 98.6 67 68.7
AL2G25690 Arabidopsis lyrata HOM05D003488 ORTHO05D004214 3.0e-19 98.2 76 59.2
AT1G67190 Arabidopsis thaliana HOM05D003488 ORTHO05D004214 3.0e-19 98.2 76 59.2
Sp5g22120 Schrenkiella parvula HOM05D003488 ORTHO05D004214 3.0e-19 98.2 76 59.2
Solyc10g083480.2 Solanum lycopersicum HOM05D003488 ORTHO05D004214 3.9e-19 97.8 77 58.4
BraA07t31008Z Brassica rapa HOM05D003488 ORTHO05D004214 5.1e-19 97.4 76 60.5
PGR004G0231 Punica granatum HOM05D003488 ORTHO05D004214 5.1e-19 97.4 67 65.7
SEGI_39785 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 5.1e-19 97.4 67 68.7
Sopen09g004200 Solanum pennellii HOM05D003488 ORTHO05D004214 5.1e-19 97.4 68 64.7
PGSC0003DMG403002701 Solanum tuberosum HOM05D003488 ORTHO05D004214 5.1e-19 97.4 68 64.7
Ah.15g095780 Amaranthus hybridus HOM05D003488 ORTHO05D004214 6.6e-19 97.1 67 67.2
SGA_v2.0_scaffold75G24751 Striga asiatica HOM05D003488 ORTHO05D004214 6.6e-19 97.1 77 61.0
TPR.G19554 Trifolium pratense HOM05D003488 ORTHO05D004214 8.7e-19 96.7 87 56.3
Nitab4.5_0001725g0160 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.1e-18 96.3 77 59.7
Oeu056924.1 Olea europaea HOM05D003488 ORTHO05D004214 1.1e-18 96.3 68 66.2
Peaxi162Scf00290g00084 Petunia axillaris HOM05D003488 ORTHO05D004214 1.1e-18 96.3 77 58.4
Solyc09g009470.1 Solanum lycopersicum HOM05D003488 ORTHO05D004214 1.1e-18 96.3 68 64.7
CAN.G1039.14 Capsicum annuum HOM05D003488 ORTHO05D004214 1.5e-18 95.9 77 57.1
CAN.G397.11 Capsicum annuum HOM05D003488 ORTHO05D004214 1.5e-18 95.9 77 57.1
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 1.5e-18 95.9 76 65.8
FAN05G0207 Fragaria x ananassa HOM05D003488 ORTHO05D004214 1.5e-18 95.9 76 65.8
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 1.5e-18 95.9 76 65.8
FAN09G1414 Fragaria x ananassa HOM05D003488 ORTHO05D004214 1.5e-18 95.9 76 65.8
Carub.0002s1346 Capsella rubella HOM05D003488 ORTHO05D004214 1.9e-18 95.5 76 57.9
Nitab4.5_0005483g0030 Nicotiana tabacum HOM05D003488 ORTHO05D004214 2.5e-18 95.1 77 58.4
RcHm_v2.0_Chr3g0473131 Rosa chinensis HOM05D003488 ORTHO05D004214 3.3e-18 94.7 76 64.5
Nitab4.5_0000132g0010 Nicotiana tabacum HOM05D003488 ORTHO05D004214 4.3e-18 94.4 68 60.3
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 5.6e-18 94.0 81 56.8
MSTRG.5840 Avicennia marina HOM05D003488 ORTHO05D004214 7.3e-18 93.6 77 59.7
Haze_19602 Corylus avellana HOM05D003488 ORTHO05D004214 7.3e-18 93.6 79 63.3
AUR62021589 Chenopodium quinoa HOM05D003488 ORTHO05D004214 9.6e-18 93.2 76 61.8
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 1.6e-17 92.4 67 62.7
ECA236G1444 Erigeron canadensis HOM05D003488 ORTHO05D004214 2.1e-17 92.0 76 56.6
Lsat_1_v5_gn_8_76881 Lactuca sativa HOM05D003488 ORTHO05D004214 3.6e-17 91.3 76 56.6
SalBow3G3938 Salvia bowleyana HOM05D003488 ORTHO05D004214 4.8e-17 90.9 69 63.8
CiPaw.13G136100 Carya illinoinensis HOM05D003488 ORTHO05D004214 8.1e-17 90.1 76 59.2
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 1.1e-16 89.7 81 55.6
Lsat_1_v5_gn_6_38721 Lactuca sativa HOM05D003488 ORTHO05D004214 1.1e-16 89.7 72 61.1
AUR62028536 Chenopodium quinoa HOM05D003488 ORTHO05D004214 2.4e-16 88.6 76 60.5
Peaxi162Scf00163g00052 Petunia axillaris HOM05D003488 ORTHO05D004214 2.4e-16 88.6 77 53.2
CANSAT54G1372 Cannabis sativa HOM05D003488 ORTHO05D004214 1.2e-15 86.3 74 58.1
CDE06G0950 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 1.2e-15 86.3 67 59.7
Sc20g0006250 Simmondsia chinensis HOM05D003488 ORTHO05D004214 1.2e-15 86.3 77 54.5
Sc12g0004500 Simmondsia chinensis HOM05D003488 ORTHO05D004214 1.5e-15 85.9 76 56.6
HanXRQChr05g0133171 Helianthus annuus HOM05D003488 ORTHO05D004214 2.0e-15 85.5 57 63.2
THA.LOC104800533 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 3.4e-15 84.7 90 51.1
Eucgr.A01498 Eucalyptus grandis HOM05D003488 ORTHO05D004214 5.8e-15 84.0 76 56.6
CAN.G1358.15 Capsicum annuum HOM05D003488 ORTHO05D004214 1.3e-14 82.8 64 60.9
Cfa016600 Carpinus fangiana HOM05D003488 ORTHO05D004214 1.7e-14 82.4 86 57.0
CDE08G1419 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 2.9e-14 81.6 71 57.7
CiPaw.13G136000 Carya illinoinensis HOM05D003488 ORTHO05D004214 3.8e-14 81.3 68 58.8
CiPaw.14G100300 Carya illinoinensis HOM05D003488 ORTHO05D004214 1.1e-13 79.7 76 55.3
Ah.15g090910 Amaranthus hybridus HOM05D003488 ORTHO05D004214 2.4e-13 78.6 56 67.9
Prupe.6G129400 Prunus persica HOM05D003488 ORTHO05D004214 2.4e-13 78.6 51 74.5
GSVIVG01033833001 Vitis vinifera HOM05D003488 ORTHO05D004214 1.2e-12 76.3 46 76.1
THA.LOC104815726 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 2.1e-12 75.5 78 50.0
Nitab4.5_0000202g0240 Nicotiana tabacum HOM05D003488 ORTHO05D004214 6.0e-12 73.9 65 55.4
PGR102G1638 Punica granatum HOM05D003488 ORTHO05D004214 1.3e-11 72.8 69 58.0
PGR102G1861 Punica granatum HOM05D003488 ORTHO05D004214 3.9e-11 71.2 79 50.6
AUR62006173 Chenopodium quinoa HOM05D003488 ORTHO05D004214 7.4e-10 67.0 57 61.4
ECA233G3236 Erigeron canadensis HOM05D003488 ORTHO05D004214 7.4e-10 67.0 52 59.6
Pp3c25_4500 Physcomitrium patens HOM05D003488 ORTHO05D004214 3.7e-09 64.7 70 48.6
Mapoly0037s0051 Marchantia polymorpha HOM05D003488 ORTHO05D004214 5.3e-08 60.8 66 50.0
SEGI_17169 Sequoiadendron giganteum HOM05D003488 ORTHO05D022332 6.9e-08 60.5 42 66.7
TPR.G38236 Trifolium pratense HOM05D003488 ORTHO05D004214 1.5e-07 59.3 55 58.2
FAN14G3815 Fragaria x ananassa HOM05D003488 ORTHO05D004214 2.6e-07 58.5 50 58.0


User provided reference genes

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