Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 2.9e-134 481.9 240 100.0
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 5.0e-134 481.1 240 99.6
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 3.8e-126 454.9 240 94.2
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 4.2e-125 451.4 240 92.5
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 4.7e-124 448.0 240 91.2
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.5e-114 416.4 240 86.2
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.5e-114 416.4 240 85.0
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 9.7e-114 413.7 234 85.9
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.1e-112 410.2 240 84.6
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 7.0e-112 407.5 240 85.0
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 5.9e-111 404.4 240 83.8
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.6e-100 369.8 226 78.8
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.0e-99 367.1 232 78.9
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 1.4e-99 366.7 240 74.6
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 2.3e-99 365.9 227 78.4
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.5e-98 363.2 240 72.1
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 7.5e-98 360.9 240 74.2
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 7.5e-98 360.9 231 76.6
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 2.2e-97 359.4 227 74.9
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 4.9e-97 358.2 227 74.9
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 8.3e-97 357.5 226 76.5
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 1.1e-96 357.1 240 72.9
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.4e-96 356.7 227 75.8
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.4e-96 355.9 226 74.8
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 5.4e-96 354.8 240 71.2
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 7.0e-96 354.4 222 77.5
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 7.0e-96 354.4 240 69.6
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.0e-95 352.8 240 69.2
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.0e-95 352.8 226 74.8
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 2.0e-95 352.8 236 72.5
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 2.0e-95 352.8 240 70.8
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 2.7e-95 352.4 236 72.0
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 5.9e-95 351.3 227 72.7
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 7.8e-95 350.9 240 72.1
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 7.8e-95 350.9 227 73.1
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 1.7e-94 349.7 227 73.1
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.7e-94 349.7 227 73.1
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 2.3e-94 349.4 240 71.2
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 2.9e-94 349.0 232 70.3
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 5.0e-94 348.2 227 73.6
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 6.6e-94 347.8 240 68.8
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-93 347.1 240 70.4
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.1e-93 347.1 224 75.9
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 2.5e-93 345.9 224 73.7
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 4.3e-93 345.1 224 72.3
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 4.3e-93 345.1 232 71.1
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 2.8e-92 342.4 222 73.9
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 3.6e-92 342.0 224 73.2
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 3.6e-92 342.0 224 75.0
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 6.1e-92 341.3 238 69.7
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.4e-91 340.1 234 71.4
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 1.8e-91 339.7 226 74.3
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 1.8e-91 339.7 240 67.9
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 3.0e-91 339.0 227 69.6
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 3.0e-91 339.0 240 68.8
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 4.0e-91 338.6 229 70.3
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 5.2e-91 338.2 227 69.6
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 1.5e-90 336.7 226 69.5
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 1.5e-90 336.7 228 71.1
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.0e-90 336.3 228 71.9
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 2.6e-90 335.9 236 67.8
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 5.7e-90 334.7 227 68.3
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 5.7e-90 334.7 227 67.8
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 9.8e-90 334.0 226 69.5
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-89 333.6 227 69.6
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-89 333.6 227 69.6
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 2.9e-89 332.4 223 70.4
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 6.4e-89 331.3 228 68.9
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 6.4e-89 331.3 222 70.7
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 1.4e-88 330.1 228 68.9
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 1.4e-88 330.1 228 68.9
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 1.4e-88 330.1 228 68.9
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 1.4e-88 330.1 228 68.9
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 3.2e-88 328.9 228 68.4
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 2.0e-87 326.2 227 68.7
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.0e-86 323.9 223 70.0
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.3e-86 323.6 229 69.0
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.0e-86 322.4 228 69.7
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 6.6e-86 321.2 269 61.7
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 8.6e-86 320.9 228 68.4
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.9e-85 319.7 232 65.5
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 3.3e-85 318.9 239 65.7
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 3.3e-85 318.9 224 67.0
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 7.3e-85 317.8 224 68.3
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 4.4e-82 308.5 230 64.8
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 1.3e-81 307.0 239 63.6
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 1.7e-81 306.6 277 58.8
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 3.0e-78 295.8 209 67.0
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 8.6e-78 294.3 222 64.0
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 4.7e-76 288.5 222 67.1
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.4e-75 287.0 195 71.8
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 2.3e-75 286.2 197 68.5
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 2.3e-75 286.2 225 61.3
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.7e-73 280.0 209 66.5
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.8e-67 260.0 173 74.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 2.0e-66 256.5 233 51.9
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.2e-65 253.1 231 59.3
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 7.1e-64 248.1 231 57.6
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 2.7e-63 246.1 231 51.9
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 7.8e-63 244.6 173 69.4
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.2e-60 237.3 155 72.3
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.6e-55 220.3 226 51.3
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 4.0e-51 205.7 199 56.8
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 6.4e-49 198.4 138 71.0
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.1e-48 197.6 155 61.9
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.0e-46 191.0 260 41.2
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.5e-45 187.2 222 47.7
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 4.3e-45 185.7 128 71.1
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 6.9e-43 178.3 237 45.6
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 4.9e-41 172.2 213 49.3
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 3.5e-39 166.0 224 41.1
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 4.6e-31 139.0 172 44.8
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 7.9e-31 138.3 265 36.6
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.3e-28 131.0 113 59.3
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 2.0e-26 123.6 91 68.1
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.2e-18 97.8 127 46.5
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 1.3e-17 94.4 73 58.9
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 5.5e-16 89.0 64 64.1
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 4.7e-15 85.9 64 65.6
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 2.0e-13 80.5 39 97.4
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-11 74.7 47 72.3
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 1.4e-11 74.3 50 72.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 1.5e-10 70.9 49 61.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.0e-09 65.9 121 33.1


User provided reference genes

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