Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 1.3e-105 386.3 187 100.0
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 1.2e-87 326.6 189 83.6
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 8.5e-81 303.9 187 77.0
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 3.6e-79 298.5 187 78.1
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 4.8e-76 288.1 191 73.3
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 6.3e-76 287.7 190 74.2
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 2.6e-74 282.3 191 71.7
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 2.4e-67 259.2 177 70.1
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 5.3e-67 258.1 178 67.4
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 7.0e-67 257.7 183 65.6
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 7.0e-67 257.7 186 65.1
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 7.0e-67 257.7 162 71.6
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 9.1e-67 257.3 186 66.1
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 9.1e-67 257.3 179 65.9
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 1.2e-66 256.9 183 67.8
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 1.5e-66 256.5 187 66.3
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.5e-66 256.5 187 66.8
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 2.0e-66 256.1 194 66.0
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 2.0e-66 256.1 170 70.6
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 4.5e-66 255.0 194 65.5
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 4.5e-66 255.0 171 70.2
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.0e-65 253.8 168 67.9
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 2.9e-65 252.3 186 65.1
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 5.0e-65 251.5 171 66.7
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 5.0e-65 251.5 181 65.2
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 8.5e-65 250.8 178 66.3
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 1.1e-64 250.4 181 64.6
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 1.5e-64 250.0 171 66.7
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 1.9e-64 249.6 161 71.4
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.5e-64 249.2 192 62.0
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 3.2e-64 248.8 186 64.0
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 5.5e-64 248.1 180 62.8
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 9.4e-64 247.3 182 63.2
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.2e-63 246.9 177 65.0
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 1.6e-63 246.5 182 64.8
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 1.6e-63 246.5 163 68.1
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 2.7e-63 245.7 166 65.7
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.6e-63 245.4 174 64.4
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 3.6e-63 245.4 159 67.9
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.1e-63 244.6 187 62.6
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 8.0e-63 244.2 179 63.1
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.0e-62 242.3 189 56.1
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 3.0e-62 242.3 194 61.9
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 4.0e-62 241.9 187 63.1
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 4.0e-62 241.9 174 64.4
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 6.7e-62 241.1 187 63.1
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 6.7e-62 241.1 160 68.1
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 6.7e-62 241.1 175 65.1
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 8.8e-62 240.7 184 58.2
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 8.8e-62 240.7 185 62.2
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 8.8e-62 240.7 155 71.6
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 8.8e-62 240.7 176 61.9
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 1.1e-61 240.4 187 60.4
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.5e-61 240.0 183 61.7
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 2.6e-61 239.2 161 67.7
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.3e-61 238.8 183 61.2
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 3.3e-61 238.8 181 63.5
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 5.7e-61 238.0 186 61.3
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 7.5e-61 237.7 182 61.5
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 9.7e-61 237.3 186 59.7
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 9.7e-61 237.3 178 62.9
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 9.7e-61 237.3 174 63.8
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 9.7e-61 237.3 158 66.5
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 1.3e-60 236.9 183 64.5
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 1.3e-60 236.9 182 61.0
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 1.7e-60 236.5 171 60.2
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 2.2e-60 236.1 184 58.2
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 2.2e-60 236.1 177 65.0
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 2.8e-60 235.7 183 63.9
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 2.8e-60 235.7 183 63.9
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.8e-60 235.7 182 63.7
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.8e-60 235.7 182 63.7
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 4.8e-60 235.0 175 61.7
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 8.2e-60 234.2 187 59.9
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 1.8e-59 233.0 161 61.5
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 1.8e-59 233.0 186 61.8
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 1.8e-59 233.0 182 62.1
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 3.1e-59 232.3 182 59.3
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 9.1e-59 230.7 183 61.7
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 9.1e-59 230.7 156 69.2
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 1.2e-58 230.3 157 67.5
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 2.0e-58 229.6 184 62.0
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 2.0e-58 229.6 186 60.8
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 2.6e-58 229.2 186 60.8
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 2.6e-58 229.2 177 60.5
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 2.6e-58 229.2 181 61.9
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 3.5e-58 228.8 182 59.3
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 5.9e-58 228.0 185 60.0
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 1.7e-57 226.5 157 66.2
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 1.7e-57 226.5 184 61.4
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 2.2e-57 226.1 211 54.5
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 6.5e-57 224.6 185 59.5
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 6.5e-57 224.6 181 58.0
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 8.5e-57 224.2 186 59.7
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 1.1e-56 223.8 178 61.2
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.1e-56 223.8 153 64.7
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 2.5e-56 222.6 159 57.2
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 4.2e-56 221.9 153 63.4
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 1.6e-55 219.9 162 62.3
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 2.1e-55 219.5 153 62.7
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 4.7e-55 218.4 158 60.8
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.0e-54 217.2 186 58.1
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 1.2e-53 213.8 152 66.4
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 2.6e-53 212.6 150 62.7
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 2.6e-53 212.6 156 59.6
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 6.3e-52 208.0 153 59.5
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.8e-51 206.5 160 61.2
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 1.6e-47 193.4 189 51.3
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 8.0e-47 191.0 160 55.6
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 1.0e-46 190.7 169 53.8
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.2e-42 177.2 190 52.1
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 3.5e-42 175.6 146 59.6
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.6e-37 159.5 159 47.2
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.6e-37 159.5 159 47.2
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.1e-35 154.1 188 39.9
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 2.7e-34 149.4 107 64.5
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 5.9e-34 148.3 162 48.1
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 2.3e-33 146.4 120 58.3
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 4.3e-32 142.1 116 60.3
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 5.6e-32 141.7 127 55.1
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 4.7e-31 138.7 94 67.0
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 6.2e-31 138.3 172 39.0
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 1.8e-30 136.7 71 90.1
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 1.3e-28 130.6 111 58.6
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 7.8e-26 121.3 73 75.3
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 6.6e-25 118.2 75 74.7
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 4.0e-22 109.0 70 65.7
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 1.3e-20 104.0 68 66.2
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 1.9e-16 90.1 146 32.9
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 1.6e-15 87.0 78 46.2
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 4.7e-15 85.5 104 41.3
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 2.0e-13 80.1 73 54.8
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.1e-11 74.3 152 24.3
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 1.9e-11 73.6 46 67.4
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 2.4e-11 73.2 38 84.2


User provided reference genes

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