Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 5.0e-91 337.8 177 100.0
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 2.7e-68 262.3 178 75.8
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.0e-59 233.8 174 70.1
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 4.3e-58 228.4 175 65.7
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 7.3e-58 227.6 175 66.9
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 3.6e-57 225.3 176 69.9
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 3.6e-57 225.3 174 67.8
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.8e-56 223.0 174 66.7
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 1.7e-54 216.5 175 62.9
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 1.7e-54 216.5 175 62.9
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 4.9e-54 214.9 170 65.3
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.8e-48 196.4 167 61.1
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 3.1e-48 195.7 170 61.2
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 1.2e-47 193.7 157 65.0
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 3.4e-47 192.2 162 61.1
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 3.8e-46 188.7 171 58.5
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 9.3e-45 184.1 170 57.1
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.2e-44 183.7 160 60.6
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 3.9e-43 178.7 178 54.5
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.1e-43 178.3 171 56.1
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 6.6e-43 177.9 171 55.6
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 1.5e-42 176.8 173 54.9
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.9e-42 176.4 171 56.1
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 4.3e-42 175.3 171 55.0
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.1e-41 172.9 172 56.4
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.1e-41 172.9 172 55.8
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 6.2e-41 171.4 171 55.0
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 8.1e-41 171.0 172 54.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.1e-40 170.6 177 53.1
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.8e-40 169.9 175 54.9
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 4.0e-40 168.7 167 56.9
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 4.0e-40 168.7 177 56.5
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 5.3e-40 168.3 172 54.1
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.2e-39 167.2 174 53.4
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.2e-39 167.2 176 57.4
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 1.5e-39 166.8 177 55.9
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 2.0e-39 166.4 168 56.5
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.6e-39 166.0 175 54.3
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.6e-39 166.0 173 54.3
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 3.4e-39 165.6 171 52.6
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 4.4e-39 165.2 169 53.3
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 7.6e-39 164.5 171 53.8
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 7.6e-39 164.5 171 53.8
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 7.6e-39 164.5 165 54.5
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 9.9e-39 164.1 175 51.4
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 2.2e-38 162.9 176 52.3
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.2e-38 162.9 173 51.4
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 6.4e-38 161.4 175 52.0
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 6.4e-38 161.4 168 54.8
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.1e-37 160.6 173 57.2
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.1e-37 160.6 168 54.2
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 2.4e-37 159.5 156 58.3
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 7.1e-37 157.9 171 51.5
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 7.1e-37 157.9 166 51.8
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.2e-36 157.1 172 51.2
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 1.2e-36 157.1 174 51.7
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 2.7e-36 156.0 174 51.7
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 2.7e-36 156.0 174 51.7
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 3.5e-36 155.6 174 51.7
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.5e-36 155.6 200 46.5
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 4.6e-36 155.2 174 51.7
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 1.0e-35 154.1 174 52.3
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 1.3e-35 153.7 163 54.6
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.3e-35 153.7 174 51.1
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.3e-35 153.7 148 58.1
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 3.0e-35 152.5 174 51.7
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 3.0e-35 152.5 174 51.7
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 5.1e-35 151.8 172 48.3
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 5.1e-35 151.8 156 55.1
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 5.1e-35 151.8 156 55.1
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 5.1e-35 151.8 167 53.3
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 6.6e-35 151.4 173 51.4
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 6.6e-35 151.4 156 57.1
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.7e-35 151.0 167 56.9
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 1.1e-34 150.6 168 54.2
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.1e-34 150.6 175 48.6
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 1.9e-34 149.8 175 52.0
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 7.3e-34 147.9 159 54.1
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.3e-33 147.1 176 51.7
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.3e-33 147.1 176 51.7
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.3e-33 147.1 156 53.8
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.3e-33 147.1 156 54.5
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.6e-33 146.7 177 48.6
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.1e-33 144.4 127 60.6
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.4e-32 143.7 148 55.4
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.8e-32 143.3 175 48.0
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 2.4e-32 142.9 170 50.6
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 3.1e-32 142.5 175 49.7
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 4.0e-32 142.1 199 45.2
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 9.0e-32 141.0 167 49.1
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.0e-31 139.8 167 48.5
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 7.6e-31 137.9 174 46.6
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 7.6e-31 137.9 169 47.3
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 1.7e-30 136.7 172 47.7
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.2e-30 136.3 145 57.2
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 2.9e-30 136.0 137 58.4
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 8.4e-30 134.4 168 48.2
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.9e-29 133.3 151 51.7
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.9e-29 133.3 153 52.3
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 2.4e-29 132.9 146 55.5
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 7.1e-29 131.3 176 45.5
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 7.1e-29 131.3 171 45.6
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 9.3e-29 131.0 215 41.9
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.6e-28 130.2 138 52.9
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 2.1e-28 129.8 168 47.0
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.1e-28 129.8 153 51.0
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 2.7e-28 129.4 138 55.1
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 6.0e-28 128.3 223 40.4
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 7.9e-28 127.9 154 53.9
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 7.9e-28 127.9 132 57.6
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.0e-27 127.5 223 39.9
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 1.0e-27 127.5 112 67.0
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.3e-27 127.1 140 52.1
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.3e-27 127.1 159 45.3
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 3.9e-27 125.6 171 43.9
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 6.7e-27 124.8 127 53.5
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.5e-26 123.6 176 45.5
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 7.4e-26 121.3 137 51.1
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.3e-25 120.6 131 56.5
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 2.8e-25 119.4 175 40.6
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.1e-25 117.9 148 50.0
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 1.4e-24 117.1 132 53.0
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 1.2e-23 114.0 176 44.3
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 4.5e-23 112.1 165 46.1
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 7.6e-23 111.3 141 49.6
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 2.2e-22 109.8 163 42.3
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 5.5e-21 105.1 168 41.1
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.7e-20 102.8 150 44.7
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 6.0e-20 101.7 94 66.0
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.3e-19 100.5 271 30.6
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.8e-19 100.1 73 63.0
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 6.7e-19 98.2 112 53.6
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 1.9e-18 96.7 97 59.8
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 4.3e-18 95.5 142 43.7
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 9.6e-18 94.4 168 34.5
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 4.8e-17 92.0 81 64.2
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.8e-16 90.1 86 62.8
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.8e-16 90.1 168 39.3
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 4.1e-16 89.0 81 61.7
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.5e-15 87.0 74 50.0
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 5.8e-15 85.1 91 49.5
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 6.5e-14 81.6 112 47.3
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.1e-13 80.9 84 56.0
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 4.2e-13 79.0 79 64.6
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 3.5e-12 75.9 137 38.0
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 7.9e-12 74.7 162 35.2
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 9.7e-10 67.8 162 34.6
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 1.8e-08 63.5 61 63.9
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.1e-08 62.4 44 79.5
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 5.9e-07 58.5 71 56.3
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 3.8e-06 55.8 131 32.8


User provided reference genes

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