Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2511g0040 Pisum sativum HOM05D054813 ORTHO05D001231 1.2e-84 316.6 173 100.0
Psat2g009720 Pisum sativum HOM05D001360 ORTHO05D328454 2.2e-59 232.6 170 78.2
Psat0s3664g0040 Pisum sativum HOM05D054813 ORTHO05D326675 2.4e-37 159.5 87 95.4
A05p40700 Brassica napus HOM05D001360 ORTHO05D001231 1.8e-13 80.1 125 41.6
BraA05t22801Z Brassica rapa HOM05D001360 ORTHO05D001231 1.8e-13 80.1 125 41.6
DCAR_018615 Daucus carota HOM05D001360 ORTHO05D001231 5.4e-13 78.6 128 39.8
Sc17g0001600 Simmondsia chinensis HOM05D001360 ORTHO05D001231 5.4e-13 78.6 125 41.6
CAN.G253.3 Capsicum annuum HOM05D001360 ORTHO05D001231 1.2e-12 77.4 149 36.2
BcaC05g29541 Brassica carinata HOM05D001360 ORTHO05D001231 1.6e-12 77.0 125 40.8
C05p59810 Brassica napus HOM05D001360 ORTHO05D001231 1.6e-12 77.0 143 37.1
BolC5t34635H Brassica oleracea HOM05D001360 ORTHO05D001231 1.6e-12 77.0 143 37.1
arahy.Tifrunner.gnm1.ann1.H3Z9GC Arachis hypogaea HOM05D001360 ORTHO05D001231 2.0e-12 76.6 145 37.2
arahy.Tifrunner.gnm1.ann1.MSL63E Arachis hypogaea HOM05D001360 ORTHO05D001231 2.0e-12 76.6 145 37.2
BcaC05g29543 Brassica carinata HOM05D001360 ORTHO05D001231 2.0e-12 76.6 125 40.0
DCAR_008397 Daucus carota HOM05D001360 ORTHO05D001231 2.0e-12 76.6 128 37.5
Hund09478 Selenicereus undatus HOM05D001360 ORTHO05D001231 2.0e-12 76.6 125 40.0
THA.LOC104822465 Tarenaya hassleriana HOM05D001360 ORTHO05D001231 2.7e-12 76.3 128 39.1
AL3G18830 Arabidopsis lyrata HOM05D001360 ORTHO05D001231 4.5e-12 75.5 140 38.6
AT3G07510 Arabidopsis thaliana HOM05D001360 ORTHO05D001231 4.5e-12 75.5 140 38.6
Haze_03595 Corylus avellana HOM05D001360 ORTHO05D001231 4.5e-12 75.5 128 38.3
MD05G1156100 Malus domestica HOM05D001360 ORTHO05D001231 4.5e-12 75.5 147 34.7
HPP92_022054 Vanilla planifolia HOM05D001360 ORTHO05D001231 4.5e-12 75.5 135 35.6
Lj1C103G10 Lonicera japonica HOM05D001360 ORTHO05D001231 5.9e-12 75.1 111 41.4
CiPaw.13G057500 Carya illinoinensis HOM05D001360 ORTHO05D001231 7.7e-12 74.7 128 35.9
Dinv10451 Davidia involucrata HOM05D001360 ORTHO05D001231 1.0e-11 74.3 144 35.4
TAR362G0852 Trochodendron aralioides HOM05D001360 ORTHO05D001231 1.0e-11 74.3 148 37.2
EL10Ac5g10593 Beta vulgaris HOM05D001360 ORTHO05D001231 1.7e-11 73.6 147 35.4
Ca_07441_v3 Cicer arietinum L. HOM05D001360 ORTHO05D001231 1.7e-11 73.6 128 37.5
MELO3C015727.2 Cucumis melo HOM05D001360 ORTHO05D001231 1.7e-11 73.6 145 35.9
CsaV3_7G027300 Cucumis sativus L. HOM05D001360 ORTHO05D001231 1.7e-11 73.6 145 35.9
Manes.12G060113 Manihot esculenta HOM05D001360 ORTHO05D001231 1.7e-11 73.6 128 38.3
Solyc09g047930.1 Solanum lycopersicum HOM05D001360 ORTHO05D001231 1.7e-11 73.6 125 39.2
Sopen09g016040 Solanum pennellii HOM05D001360 ORTHO05D001231 1.7e-11 73.6 125 39.2
AUR62008073 Chenopodium quinoa HOM05D001360 ORTHO05D001231 2.2e-11 73.2 125 38.4
AUR62028652 Chenopodium quinoa HOM05D001360 ORTHO05D001231 2.2e-11 73.2 125 38.4
FvH4_2g17600 Fragaria vesca HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 36.7
FAN15G0553 Fragaria x ananassa HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 36.7
FAN15G1977 Fragaria x ananassa HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 36.7
FAN24G2010 Fragaria x ananassa HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 36.7
FAN27G0972 Fragaria x ananassa HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 36.7
FAN27G1413 Fragaria x ananassa HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 36.7
Glyma.18G154000 Glycine max HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 37.5
Lj1g0010077 Lotus japonicus HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 36.7
Peaxi162Scf00841g00032 Petunia axillaris HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 36.7
RcHm_v2.0_Chr6g0282541 Rosa chinensis HOM05D001360 ORTHO05D001231 2.2e-11 73.2 128 36.7
PGSC0003DMG400029171 Solanum tuberosum HOM05D001360 ORTHO05D001231 2.2e-11 73.2 125 38.4
TWI18G0104 Tripterygium wilfordii HOM05D001360 ORTHO05D001231 2.2e-11 73.2 125 38.4
ECA248G1556 Erigeron canadensis HOM05D001360 ORTHO05D001231 2.9e-11 72.8 139 33.8
Glyma.08G343000 Glycine max HOM05D001360 ORTHO05D001231 2.9e-11 72.8 128 37.5
Sp3g06420 Schrenkiella parvula HOM05D001360 ORTHO05D001231 2.9e-11 72.8 125 39.2
Aa31LG5G23600 Aethionema arabicum HOM05D001360 ORTHO05D001231 3.8e-11 72.4 164 34.8
BolC3t16559H Brassica oleracea HOM05D001360 ORTHO05D001231 3.8e-11 72.4 145 36.6
Carub.0003s0705 Capsella rubella HOM05D001360 ORTHO05D001231 3.8e-11 72.4 125 39.2
CARHR082160 Cardamine hirsuta HOM05D001360 ORTHO05D001231 3.8e-11 72.4 125 39.2
Cpa.g.sc8.50 Carica papaya HOM05D001360 ORTHO05D001231 3.8e-11 72.4 125 36.8
Manes.13G055900 Manihot esculenta HOM05D001360 ORTHO05D001231 3.8e-11 72.4 165 33.3
Medtr7g051210 Medicago truncatula HOM05D001360 ORTHO05D001231 3.8e-11 72.4 128 38.3
Nitab4.5_0000038g0200 Nicotiana tabacum HOM05D001360 ORTHO05D001231 3.8e-11 72.4 149 34.9
BcaC01g04279 Brassica carinata HOM05D001360 ORTHO05D001231 5.0e-11 72.0 125 39.2
ClCG09G007830 Citrullus lanatus HOM05D001360 ORTHO05D001231 5.0e-11 72.0 128 37.5
Thhalv10021445m.g Eutrema salsugineum HOM05D001360 ORTHO05D001231 5.0e-11 72.0 164 34.1
Lalb_Chr03g0040971 Lupinus albus HOM05D001360 ORTHO05D001231 5.0e-11 72.0 140 36.4
Sed0025553 Sechium edule HOM05D001360 ORTHO05D001231 5.0e-11 72.0 128 37.5
Aa31LG4G9720 Aethionema arabicum HOM05D001360 ORTHO05D001231 6.5e-11 71.6 125 38.4
A03p35290 Brassica napus HOM05D001360 ORTHO05D001231 6.5e-11 71.6 145 35.9
C03p42910 Brassica napus HOM05D001360 ORTHO05D001231 6.5e-11 71.6 125 39.2
BraA03t12707Z Brassica rapa HOM05D001360 ORTHO05D001231 6.5e-11 71.6 145 35.9
Potri.014G176000 Populus trichocarpa HOM05D001360 ORTHO05D001231 6.5e-11 71.6 128 35.9
Lsat_1_v5_gn_5_176620 Lactuca sativa HOM05D001360 ORTHO05D001231 8.5e-11 71.2 137 36.5
Psat3g151800 Pisum sativum HOM05D001360 ORTHO05D001231 8.5e-11 71.2 128 37.5
MSTRG.12746 Avicennia marina HOM05D001360 ORTHO05D001231 1.1e-10 70.9 125 36.8
BcaB03g14697 Brassica carinata HOM05D001360 ORTHO05D001231 1.1e-10 70.9 125 38.4
CiPaw.14G045000 Carya illinoinensis HOM05D001360 ORTHO05D001231 1.1e-10 70.9 125 37.6
MD10G1149800 Malus domestica HOM05D001360 ORTHO05D001231 1.1e-10 70.9 150 32.7
Nitab4.5_0005686g0040 Nicotiana tabacum HOM05D001360 ORTHO05D001231 1.1e-10 70.9 145 35.2
SalBow1G0984 Salvia bowleyana HOM05D001360 ORTHO05D001231 1.1e-10 70.9 128 37.5
Thecc.01G208800 Theobroma cacao HOM05D001360 ORTHO05D001231 1.1e-10 70.9 128 35.9
Duzib138G1389 Durio zibethinus HOM05D001360 ORTHO05D001231 1.5e-10 70.5 125 36.8
Gohir.A07G090000 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.5e-10 70.5 133 33.8
Phvul.008G137900 Phaseolus vulgaris HOM05D001360 ORTHO05D001231 1.5e-10 70.5 125 38.4
QL09p047247 Quercus lobata HOM05D000003 ORTHO05D001231 1.5e-10 70.5 128 36.7
QL09p047536 Quercus lobata HOM05D001360 ORTHO05D001231 1.5e-10 70.5 128 36.7
Duzib211G0121 Durio zibethinus HOM05D001360 ORTHO05D001231 1.9e-10 70.1 128 35.9
Gohir.A07G158300 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.9e-10 70.1 155 32.3
Lj2P1114T30 Lonicera japonica HOM05D001360 ORTHO05D001231 1.9e-10 70.1 128 37.5
Potri.002G239500 Populus trichocarpa HOM05D001360 ORTHO05D001231 1.9e-10 70.1 125 36.8
VMungo1383G0442 Vigna mungo HOM05D001360 ORTHO05D001231 1.9e-10 70.1 125 38.4
Ciclev10016823m.g Citrus clementina HOM05D001360 ORTHO05D001231 2.5e-10 69.7 128 36.7
Eucgr.K02084 Eucalyptus grandis HOM05D001360 ORTHO05D001231 2.5e-10 69.7 146 34.9
Gohir.A11G143400 Gossypium hirsutum HOM05D001360 ORTHO05D001231 2.5e-10 69.7 125 36.8
Gohir.D07G094700 Gossypium hirsutum HOM05D001360 ORTHO05D001231 2.5e-10 69.7 130 34.6
Gohir.D11G149800 Gossypium hirsutum HOM05D001360 ORTHO05D001231 2.5e-10 69.7 125 36.8
Gorai.001G102000 Gossypium raimondii HOM05D001360 ORTHO05D001231 2.5e-10 69.7 130 34.6
Gorai.007G160700 Gossypium raimondii HOM05D001360 ORTHO05D001231 2.5e-10 69.7 125 36.8
MBI04_g26965_MAGBIO Magnolia biondii HOM05D001360 ORTHO05D001231 2.5e-10 69.7 128 34.4
PGR044G0829 Punica granatum HOM05D001360 ORTHO05D001231 2.5e-10 69.7 125 36.8
Sabra14G0134900 Salix brachista HOM05D001360 ORTHO05D001231 2.5e-10 69.7 138 34.8
SalBow3G1192 Salvia bowleyana HOM05D001360 ORTHO05D001231 2.5e-10 69.7 128 36.7
Migut.N00677 Erythranthe guttata HOM05D001360 ORTHO05D001231 3.2e-10 69.3 128 35.9
Lsat_1_v5_gn_9_16561 Lactuca sativa HOM05D001360 ORTHO05D001231 3.2e-10 69.3 128 36.7
MBI19_g20928_MAGBIO Magnolia biondii HOM05D001360 ORTHO05D001231 3.2e-10 69.3 128 37.5
MD05G1155400 Malus domestica HOM05D001360 ORTHO05D001231 3.2e-10 69.3 127 38.6
Rhsim13G0054600 Rhododendron simsii HOM05D001360 ORTHO05D001231 3.2e-10 69.3 153 34.0
Actinidia23349 Actinidia chinensis HOM05D001360 ORTHO05D001231 4.2e-10 68.9 144 34.0
Gohir.D07G167900 Gossypium hirsutum HOM05D001360 ORTHO05D001231 4.2e-10 68.9 151 33.1
Gorai.N002200 Gossypium raimondii HOM05D001360 ORTHO05D001231 4.2e-10 68.9 151 33.1
MD05G1155900 Malus domestica HOM05D001360 ORTHO05D001231 4.2e-10 68.9 125 36.8
Sabra02G0182400 Salix brachista HOM05D000001 ORTHO05D000003 4.2e-10 68.9 125 34.4
SGA_v2.0_scaffold77G25308 Striga asiatica HOM05D001360 ORTHO05D001231 4.2e-10 68.9 128 35.9
TAR633G1941 Trochodendron aralioides HOM05D001360 ORTHO05D001231 4.2e-10 68.9 145 33.8
HanXRQChr08g0231831 Helianthus annuus HOM05D001360 ORTHO05D001231 5.5e-10 68.6 128 35.2
Dinv28798 Davidia involucrata HOM05D001360 ORTHO05D001231 9.4e-10 67.8 128 35.2
CSS0034994 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 1.2e-09 67.4 143 33.6
Cc01_g15940 Coffea canephora HOM05D001360 ORTHO05D001231 1.2e-09 67.4 146 35.6
CDE11G0645 Ceratophyllum demersum HOM05D001360 ORTHO05D001231 1.6e-09 67.0 132 33.3
Dinv35454 Davidia involucrata HOM05D001360 ORTHO05D001231 1.6e-09 67.0 133 34.6
Duzib138G1870 Durio zibethinus HOM05D001360 ORTHO05D001231 1.6e-09 67.0 144 32.6
PSO732G0065 Papaver somniferum HOM05D001360 ORTHO05D001231 2.1e-09 66.6 125 36.0
CANSAT01G1149 Cannabis sativa HOM05D001360 ORTHO05D001231 2.7e-09 66.2 159 33.3
Ciclev10018250m.g Citrus clementina HOM05D001360 ORTHO05D001231 2.7e-09 66.2 142 31.7
PSO675G2269 Papaver somniferum HOM05D001360 ORTHO05D001231 2.7e-09 66.2 125 36.0
PSO732G0270 Papaver somniferum HOM05D001360 ORTHO05D001231 2.7e-09 66.2 125 36.0
Prupe.8G188200 Prunus persica HOM05D001360 ORTHO05D001231 2.7e-09 66.2 150 31.3
Solyc06g082960.3 Solanum lycopersicum HOM05D001360 ORTHO05D001231 2.7e-09 66.2 134 31.3
unitig_0.g1226 Utricularia gibba HOM05D001360 ORTHO05D001231 2.7e-09 66.2 149 30.2
Actinidia29999 Actinidia chinensis HOM05D001360 ORTHO05D001231 3.6e-09 65.9 144 34.0
CSS0047701 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 3.6e-09 65.9 128 36.7
COL.COLO4_07044 Corchorus olitorius HOM05D001360 ORTHO05D001231 3.6e-09 65.9 145 31.7
Potri.014G176300 Populus trichocarpa HOM05D001360 ORTHO05D001231 3.6e-09 65.9 142 32.4
Thecc.01G208900 Theobroma cacao HOM05D001360 ORTHO05D001231 3.6e-09 65.9 139 33.1
Aqoxy6G00986 Aquilegia oxysepala HOM05D001360 ORTHO05D001231 4.7e-09 65.5 144 34.0
vmacro02835 Vaccinium macrocarpon HOM05D001360 ORTHO05D001231 4.7e-09 65.5 152 32.9
Gohir.A07G195900 Gossypium hirsutum HOM05D001360 ORTHO05D001231 8.0e-09 64.7 139 33.1
Gorai.001G227700 Gossypium raimondii HOM05D001360 ORTHO05D001231 8.0e-09 64.7 149 30.9
Manes.12G060112 Manihot esculenta HOM05D001360 ORTHO05D001231 8.0e-09 64.7 149 30.9
CSS0036779 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 2.3e-08 63.2 128 35.9
Peaxi162Scf01242g00035 Petunia axillaris HOM05D001360 ORTHO05D001231 3.0e-08 62.8 136 28.7
Rhsim13G0054500 Rhododendron simsii HOM05D001360 ORTHO05D001231 3.0e-08 62.8 127 35.4
SEGI_27219 Sequoiadendron giganteum HOM05D001360 ORTHO05D001231 3.0e-08 62.8 145 30.3
Sopen06g034350 Solanum pennellii HOM05D001360 ORTHO05D001231 3.0e-08 62.8 136 30.1
Potri.014G176400 Populus trichocarpa HOM05D001360 ORTHO05D001231 4.0e-08 62.4 141 33.3
DCAR_012463 Daucus carota HOM05D001360 ORTHO05D001231 5.2e-08 62.0 126 31.7
TWI75G1230 Tripterygium wilfordii HOM05D001360 ORTHO05D001231 5.2e-08 62.0 115 33.9
Ciclev10016664m.g Citrus clementina HOM05D001360 ORTHO05D001231 6.8e-08 61.6 138 31.2
DCAR_012461 Daucus carota HOM05D001360 ORTHO05D001231 6.8e-08 61.6 126 31.7
Atru.chr1.4058 Acer truncatum HOM05D001360 ORTHO05D001231 1.2e-07 60.8 146 30.8
DCAR_012462 Daucus carota HOM05D001360 ORTHO05D001231 1.2e-07 60.8 130 31.5
Cfa010667 Carpinus fangiana HOM05D001360 ORTHO05D001231 2.0e-07 60.1 144 34.0
Sabra14G0135000 Salix brachista HOM05D001360 ORTHO05D001231 2.0e-07 60.1 146 31.5
Atru.chr1.4059 Acer truncatum HOM05D001360 ORTHO05D001231 2.6e-07 59.7 146 30.1
SEGI_12504 Sequoiadendron giganteum HOM05D001360 ORTHO05D001231 2.6e-07 59.7 125 32.0
Manes.12G059900 Manihot esculenta HOM05D001360 ORTHO05D001231 5.7e-07 58.5 143 28.7
CSS0011998 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 9.8e-07 57.8 123 31.7
DCAR_029880 Daucus carota HOM05D001360 ORTHO05D001231 9.8e-07 57.8 128 34.4
Manes.12G060101 Manihot esculenta HOM05D001360 ORTHO05D001231 9.8e-07 57.8 143 26.6
Manes.12G060200 Manihot esculenta HOM05D001360 ORTHO05D001231 9.8e-07 57.8 143 28.0
ATR0661G007 Amborella trichopoda HOM05D001360 ORTHO05D001231 1.3e-06 57.4 127 28.3
GSVIVG01005237001 Vitis vinifera HOM05D001360 ORTHO05D001231 1.3e-06 57.4 118 33.9
BcaB07g30732 Brassica carinata HOM05D001360 ORTHO05D001231 1.7e-06 57.0 125 30.4
Oeu003668.1 Olea europaea HOM05D001360 ORTHO05D001231 1.7e-06 57.0 110 32.7
Atru.chr1.4062 Acer truncatum HOM05D001360 ORTHO05D001231 2.8e-06 56.2 148 28.4
GSVIVG01029594001 Vitis vinifera HOM05D001360 ORTHO05D001231 2.8e-06 56.2 123 31.7
Cpa.g.sc8.51 Carica papaya HOM05D001360 ORTHO05D000611 3.7e-06 55.8 149 28.9
Nn1g09615 Nelumbo nucifera HOM05D001360 ORTHO05D001231 3.7e-06 55.8 80 42.5
PGSC0003DMG400024295 Solanum tuberosum HOM05D001360 ORTHO05D001231 3.7e-06 55.8 137 27.0
PGR083G2480 Punica granatum HOM05D001360 ORTHO05D001231 4.9e-06 55.5 126 32.5
CSS0016484 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 6.3e-06 55.1 123 31.7
DCAR_011875 Daucus carota HOM05D001360 ORTHO05D001231 6.3e-06 55.1 126 33.3


User provided reference genes

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