Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 4.7e-230 800.8 401 100.0
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 5.0e-179 631.3 410 81.2
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 4.8e-174 614.8 426 77.0
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.9e-162 576.2 408 74.0
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 3.6e-161 572.0 378 78.0
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 3.6e-161 572.0 378 78.0
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 6.1e-161 571.2 393 75.1
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.3e-160 569.3 377 77.7
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 4.8e-158 561.6 382 74.3
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.4e-144 516.9 337 76.6
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 3.0e-144 515.8 340 74.1
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 4.9e-142 508.4 367 69.8
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.1e-141 507.3 375 66.7
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.1e-141 507.3 362 69.6
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.8e-141 506.5 369 67.2
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.6e-140 503.4 347 71.2
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 5.9e-140 501.5 392 65.6
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.7e-139 500.0 356 70.2
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.9e-139 499.2 342 70.2
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 5.0e-139 498.4 400 63.0
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.6e-139 498.0 342 70.2
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 8.6e-139 497.7 362 68.2
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 8.6e-139 497.7 349 71.3
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 2.5e-138 496.1 349 71.1
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 2.5e-138 496.1 349 71.1
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.3e-138 495.7 342 69.3
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 5.6e-138 495.0 368 66.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 9.5e-138 494.2 371 66.3
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 9.5e-138 494.2 341 70.1
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.1e-137 493.0 392 64.0
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.4e-136 490.3 353 66.9
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 4.0e-136 488.8 355 67.0
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 6.8e-136 488.0 347 66.3
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 8.9e-136 487.6 356 66.3
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.5e-135 486.9 341 69.8
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 5.7e-135 485.0 374 65.5
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 6.4e-134 481.5 378 64.8
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 8.3e-134 481.1 344 67.2
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.1e-133 480.7 338 68.9
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.1e-133 480.7 399 61.7
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.4e-133 479.6 340 68.8
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 4.1e-133 478.8 341 66.9
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 4.1e-133 478.8 350 65.7
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 4.1e-133 478.8 350 66.6
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 9.2e-133 477.6 269 87.4
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.2e-132 477.2 344 65.7
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.5e-132 475.7 342 65.8
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 4.6e-132 475.3 366 64.8
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.0e-131 474.2 378 62.2
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.0e-131 474.2 342 66.1
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.3e-131 473.8 374 62.6
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.7e-131 473.4 344 66.6
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 3.0e-131 472.6 361 65.4
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 6.6e-131 471.5 344 66.6
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 6.6e-131 471.5 344 66.6
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 6.6e-131 471.5 344 66.6
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.1e-130 470.7 347 64.8
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.1e-130 470.7 340 68.2
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.5e-130 470.3 344 66.0
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.5e-130 470.3 341 65.1
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.5e-130 470.3 341 65.1
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.9e-130 469.9 339 67.8
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.9e-130 469.9 390 61.3
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.5e-130 469.5 342 65.2
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 5.6e-130 468.4 379 61.7
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 9.5e-130 467.6 345 65.8
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.6e-129 466.8 335 66.9
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.6e-129 466.8 320 68.8
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 3.6e-129 465.7 341 64.5
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 4.7e-129 465.3 336 66.7
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 6.2e-129 464.9 319 69.3
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 6.2e-129 464.9 319 69.3
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.0e-128 464.2 314 69.7
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.4e-128 463.8 319 68.7
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.4e-128 463.8 332 66.6
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.4e-128 463.8 369 64.8
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.3e-128 463.0 347 64.8
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 5.2e-128 461.8 319 68.3
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.5e-127 460.3 351 63.2
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 3.4e-127 459.1 345 64.9
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 4.4e-127 458.8 399 58.6
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 2.2e-126 456.4 318 66.4
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.4e-125 453.8 380 61.1
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.4e-125 453.8 338 63.6
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.9e-125 453.4 321 66.4
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.4e-125 453.0 318 66.4
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 7.0e-125 451.4 349 61.9
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.2e-124 450.7 338 63.3
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 4.6e-124 448.7 354 64.1
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 3.9e-123 445.7 364 59.9
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 5.0e-123 445.3 322 64.3
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.6e-122 441.8 339 61.1
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 9.5e-122 441.0 337 65.9
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.0e-119 433.3 405 58.0
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.6e-116 423.7 340 62.6
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.1e-116 423.3 472 49.2
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.7e-116 422.9 269 74.3
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 4.6e-116 422.2 293 68.6
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 8.6e-115 417.9 322 60.9
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 4.7e-113 412.1 340 62.4
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 2.2e-110 403.3 274 71.9
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.4e-109 400.6 336 58.0
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 7.1e-109 398.3 321 60.4
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 6.0e-108 395.2 270 71.9
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.3e-107 393.3 287 65.5
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 5.1e-107 392.1 300 61.0
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 6.6e-107 391.7 520 44.2
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 3.3e-106 389.4 335 63.3
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 2.1e-105 386.7 264 68.6
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.2e-103 380.9 299 63.2
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 7.6e-103 378.3 271 69.4
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.4e-93 345.5 318 52.8
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.9e-91 339.3 341 49.6
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 9.6e-90 334.7 327 51.1
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 3.6e-89 332.8 334 52.4
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 6.2e-89 332.0 336 47.9
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 2.4e-88 330.1 320 51.2
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 5.3e-88 328.9 237 68.4
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 2.4e-85 320.1 217 70.5
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.5e-82 310.8 220 64.5
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.0e-75 288.1 220 63.2
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 6.3e-73 278.9 172 76.2
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 6.3e-73 278.9 267 52.1
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.5e-69 266.9 251 59.0
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.3e-67 261.2 190 66.8
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 9.7e-66 255.0 240 60.0
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 4.5e-63 246.1 186 64.5
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.8e-62 243.0 247 51.0
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.1e-53 214.9 224 52.7
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 3.8e-46 189.9 117 69.2
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 4.8e-41 172.9 90 87.8
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.5e-39 166.8 155 58.7
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.5e-37 159.5 152 50.0
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 9.4e-37 158.7 305 35.1
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.2e-34 151.8 292 33.6
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 5.9e-31 139.4 84 77.4
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 4.2e-29 133.3 327 31.8
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.3e-22 111.7 98 49.0
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 5.4e-16 89.7 78 65.4
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.7e-14 84.7 103 42.7
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 6.6e-14 82.8 184 30.4
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.3e-11 74.3 48 66.7


User provided reference genes

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