Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 4.0e-285 984.2 526 100.0
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 2.8e-222 775.4 528 79.2
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 3.2e-218 761.9 534 79.6
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 3.4e-212 741.9 529 78.3
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.1e-205 720.3 528 73.3
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 5.5e-194 681.4 528 69.3
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 7.2e-194 681.0 528 69.7
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 4.1e-189 665.2 529 69.6
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 7.7e-188 661.0 533 67.5
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 5.3e-181 638.3 528 66.5
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 2.6e-180 636.0 528 66.5
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 4.0e-168 595.5 529 63.5
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.3e-147 527.3 553 57.0
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 9.5e-146 521.2 546 56.8
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 3.2e-141 506.1 549 55.2
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 3.3e-138 496.1 555 55.0
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.3e-131 474.2 544 56.4
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.3e-131 473.4 553 52.8
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.7e-129 465.7 544 52.9
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 2.3e-128 463.4 541 53.4
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.1e-128 463.0 544 53.9
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.5e-127 460.7 545 53.0
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.8e-127 458.8 549 51.2
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-125 454.5 575 52.3
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 3.2e-125 453.0 544 52.6
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 9.2e-125 451.4 546 52.6
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.6e-124 449.1 547 51.9
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 6.0e-124 448.7 547 50.8
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 3.0e-123 446.4 562 50.7
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 3.9e-123 446.0 542 52.4
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.5e-122 444.1 597 47.1
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.3e-122 442.6 540 51.7
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 5.6e-122 442.2 554 50.0
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 7.3e-122 441.8 544 51.7
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.8e-121 439.9 548 52.6
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 4.7e-121 439.1 537 52.0
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 2.4e-120 436.8 562 51.2
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 7.6e-119 431.8 594 48.1
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 9.9e-119 431.4 545 49.7
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 1.7e-118 430.6 541 52.5
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.9e-118 429.9 546 49.6
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 8.4e-118 428.3 543 49.2
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 2.4e-117 426.8 547 49.7
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.0e-115 421.4 544 49.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 6.6e-115 418.7 475 54.1
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.1e-114 417.9 579 47.0
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 2.8e-113 413.3 574 48.3
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.1e-112 409.8 540 49.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.5e-111 407.5 549 46.8
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.4e-111 406.4 591 48.2
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.3e-110 404.4 463 54.4
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 2.9e-110 403.3 291 71.8
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 8.4e-110 401.7 541 48.6
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-109 401.4 572 49.0
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 3.5e-108 396.4 532 47.6
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.9e-107 392.9 545 46.8
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 8.7e-107 391.7 508 50.8
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.5e-106 391.0 541 48.2
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 8.1e-105 385.2 538 46.3
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.3e-104 382.5 546 46.0
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.3e-104 382.5 546 46.0
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 9.0e-104 381.7 549 46.3
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 9.0e-104 381.7 547 46.4
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.2e-103 381.3 568 47.9
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 3.4e-103 379.8 545 46.8
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 5.8e-103 379.0 565 46.0
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 9.9e-103 378.3 586 45.7
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 2.9e-102 376.7 544 47.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.9e-101 374.0 566 45.6
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 2.4e-101 373.6 543 46.2
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.6e-100 370.9 556 45.7
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.3e-99 367.9 553 46.1
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 2.5e-98 363.6 553 45.4
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.4e-96 357.8 562 46.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 3.1e-96 356.7 565 42.8
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.5e-95 354.4 549 45.4
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 2.0e-95 354.0 528 44.5
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 2.6e-95 353.6 528 44.5
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.6e-95 353.6 535 48.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 5.8e-95 352.4 527 47.6
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 7.6e-95 352.1 549 45.2
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.3e-94 351.3 540 45.2
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.7e-94 350.9 539 45.3
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 3.2e-93 346.7 536 43.3
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 7.1e-93 345.5 533 44.8
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.1e-93 345.5 442 48.4
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 4.6e-92 342.8 652 40.2
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.0e-91 341.7 539 42.5
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 3.0e-91 340.1 535 42.4
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 3.9e-91 339.7 531 43.3
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 9.6e-90 335.1 467 46.9
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.4e-88 330.5 581 41.8
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 2.2e-86 323.9 543 41.3
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 2.2e-86 323.9 547 41.9
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 6.5e-86 322.4 386 49.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.9e-85 320.9 536 42.4
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 3.5e-84 316.6 545 42.9
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.0e-83 315.1 465 43.2
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.8e-80 304.3 541 43.6
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 3.1e-80 303.5 311 56.3
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 9.0e-80 302.0 470 44.9
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.3e-78 298.1 557 40.4
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 5.5e-77 292.7 541 41.6
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.2e-76 291.6 524 41.6
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.2e-76 291.6 524 41.6
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.3e-74 283.5 295 53.6
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 5.9e-71 272.7 542 37.5
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 9.4e-69 265.4 379 47.2
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 7.9e-68 262.3 446 46.9
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 2.0e-66 257.7 447 46.8
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 7.0e-64 249.2 552 35.7
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 3.5e-63 246.9 538 36.6
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.5e-53 214.9 398 41.2
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.4e-51 208.4 480 36.7
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.7e-49 201.4 335 42.4
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.5e-42 178.3 584 29.6
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 4.9e-41 173.3 576 30.4
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 7.0e-40 169.5 267 42.7
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 5.6e-37 159.8 516 30.0
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.0e-35 154.1 428 32.7
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.6e-28 131.7 252 43.7
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 2.3e-27 127.9 177 56.5
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 4.4e-26 123.6 171 36.8
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 4.9e-25 120.2 232 37.9
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 2.1e-20 104.8 207 42.5
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 8.9e-19 99.4 232 34.9
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 4.9e-17 93.6 128 58.6
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 4.1e-16 90.5 197 35.5
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.2e-15 89.0 161 32.9
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.6e-15 88.6 185 38.9
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 6.0e-15 86.7 66 62.1
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 2.1e-12 78.2 105 47.6
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 2.1e-12 78.2 105 47.6
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 2.1e-12 78.2 105 47.6
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 2.1e-12 78.2 105 47.6
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 2.1e-12 78.2 105 47.6
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 2.1e-12 78.2 105 47.6
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 2.3e-11 74.7 100 47.0
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.4e-10 70.5 101 48.5
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.7e-09 68.6 157 31.2
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 5.4e-08 63.5 261 32.2
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 6.0e-07 60.1 37 73.0
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 8.6e-06 56.2 75 48.0


User provided reference genes

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