Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2453g0160 Pisum sativum HOM05D006825 ORTHO05D008510 1.5e-49 199.1 96 100.0
Psat4g100720 Pisum sativum HOM05D006825 ORTHO05D008510 3.2e-15 85.1 39 100.0
TPR.G39556 Trifolium pratense HOM05D006825 ORTHO05D008510 2.3e-13 79.0 39 89.7
Lj4g0003754 Lotus japonicus HOM05D006825 ORTHO05D008510 3.0e-13 78.6 39 89.7
Ca_22387_v3 Cicer arietinum L. HOM05D006825 ORTHO05D008510 1.1e-12 76.6 39 89.7
Medtr8g075430 Medicago truncatula HOM05D006825 ORTHO05D008510 1.1e-12 76.6 38 89.5
Glyma.02G047100 Glycine max HOM05D006825 ORTHO05D008510 1.9e-12 75.9 39 82.1
Phvul.003G264100 Phaseolus vulgaris HOM05D006825 ORTHO05D008510 7.3e-12 73.9 39 82.1
Lalb_Chr05g0229811 Lupinus albus HOM05D006825 ORTHO05D008510 1.1e-10 70.1 39 76.9
arahy.Tifrunner.gnm1.ann1.89Z5DT Arachis hypogaea HOM05D006825 ORTHO05D008510 2.4e-10 68.9 39 76.9
arahy.Tifrunner.gnm1.ann1.JPTZ14 Arachis hypogaea HOM05D006825 ORTHO05D008510 2.4e-10 68.9 39 76.9
VMungo0251G0870 Vigna mungo HOM05D006825 ORTHO05D008510 4.0e-10 68.2 37 81.1
Cfa006985 Carpinus fangiana HOM05D000348 ORTHO05D000244 5.2e-10 67.8 66 51.5
arahy.Tifrunner.gnm1.ann1.K0MBH8 Arachis hypogaea HOM05D006825 ORTHO05D008510 8.9e-10 67.0 40 75.0
MD15G1244000 Malus domestica HOM05D006825 ORTHO05D008510 1.2e-09 66.6 64 51.6
Eucgr.I02337 Eucalyptus grandis HOM05D006825 ORTHO05D008510 3.4e-09 65.1 39 69.2
HanXRQChr09g0256941 Helianthus annuus HOM05D006825 ORTHO05D008510 3.4e-09 65.1 39 71.8
Gohir.A02G171400 Gossypium hirsutum HOM05D006825 ORTHO05D008510 4.4e-09 64.7 39 69.2
QL06p050789 Quercus lobata HOM05D006825 ORTHO05D008510 4.4e-09 64.7 66 45.5
AT5G66180 Arabidopsis thaliana HOM05D006825 ORTHO05D008510 7.6e-09 63.9 39 71.8
Hund14052 Selenicereus undatus HOM05D006825 ORTHO05D008510 7.6e-09 63.9 39 66.7
CANSAT25G1468 Cannabis sativa HOM05D006825 ORTHO05D008510 9.9e-09 63.5 64 48.4
Haze_03748 Corylus avellana HOM05D006825 ORTHO05D008510 9.9e-09 63.5 64 48.4
Gohir.D03G008700 Gossypium hirsutum HOM05D006825 ORTHO05D008510 9.9e-09 63.5 39 66.7
Gorai.003G008900 Gossypium raimondii HOM05D006825 ORTHO05D008510 9.9e-09 63.5 39 66.7
Atru.chr6.2520 Acer truncatum HOM05D006825 ORTHO05D008510 1.3e-08 63.2 38 71.1
Ciclev10025798m.g Citrus clementina HOM05D006825 ORTHO05D008510 1.3e-08 63.2 39 64.1
Thecc.01G016500 Theobroma cacao HOM05D006825 ORTHO05D008510 1.3e-08 63.2 39 69.2
Lsat_1_v5_gn_4_145901 Lactuca sativa HOM05D006825 ORTHO05D008510 1.7e-08 62.8 37 73.0
Lsat_1_v5_gn_4_145960 Lactuca sativa HOM05D006825 ORTHO05D008510 1.7e-08 62.8 37 73.0
Sabra07G0048700 Salix brachista HOM05D006825 ORTHO05D008510 2.2e-08 62.4 37 73.0
AUR62003356 Chenopodium quinoa HOM05D006825 ORTHO05D008510 2.9e-08 62.0 39 69.2
MELO3C007916.2 Cucumis melo HOM05D006825 ORTHO05D008510 2.9e-08 62.0 38 65.8
CsaV3_6G047250 Cucumis sativus L. HOM05D006825 ORTHO05D008510 2.9e-08 62.0 37 67.6
PGR119G0791 Punica granatum HOM05D006825 ORTHO05D008510 2.9e-08 62.0 39 64.1
AUR62029480 Chenopodium quinoa HOM05D006825 ORTHO05D008510 3.8e-08 61.6 39 69.2
Potri.007G056800 Populus trichocarpa HOM05D006825 ORTHO05D008510 3.8e-08 61.6 37 70.3
CiPaw.08G130700 Carya illinoinensis HOM05D006825 ORTHO05D008510 4.9e-08 61.2 39 66.7
Dinv33645 Davidia involucrata HOM05D006825 ORTHO05D008510 4.9e-08 61.2 39 66.7
MD02G1129700 Malus domestica HOM05D006825 ORTHO05D008510 4.9e-08 61.2 39 69.2
Nn3g20374 Nelumbo nucifera HOM05D006825 ORTHO05D008510 4.9e-08 61.2 66 45.5
Duzib147G0784 Durio zibethinus HOM05D006825 ORTHO05D008510 6.4e-08 60.8 39 66.7
Aa31LG1G14680 Aethionema arabicum HOM05D006825 ORTHO05D008510 8.4e-08 60.5 39 71.8
Aqoxy2G04041 Aquilegia oxysepala HOM05D006825 ORTHO05D008510 8.4e-08 60.5 71 43.7
SalBow7G2494 Salvia bowleyana HOM05D006825 ORTHO05D008510 8.4e-08 60.5 39 61.5
Sed0006507 Sechium edule HOM05D000348 ORTHO05D000244 8.4e-08 60.5 37 64.9
TAR626G0952 Trochodendron aralioides HOM05D006825 ORTHO05D008510 8.4e-08 60.5 60 50.0
Cpa.g.sc6.269 Carica papaya HOM05D006825 ORTHO05D008510 1.1e-07 60.1 39 69.2
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 1.1e-07 60.1 37 64.9
Nitab4.5_0000438g0130 Nicotiana tabacum HOM05D006825 ORTHO05D008510 1.1e-07 60.1 39 66.7
Nitab4.5_0004340g0050 Nicotiana tabacum HOM05D006825 ORTHO05D008510 1.4e-07 59.7 39 66.7
Prupe.7G169900 Prunus persica HOM05D006825 ORTHO05D008510 1.4e-07 59.7 39 64.1
FAN28G2055 Fragaria x ananassa HOM05D006825 ORTHO05D008510 1.9e-07 59.3 64 45.3
Lj4A220T100 Lonicera japonica HOM05D006825 ORTHO05D008510 1.9e-07 59.3 38 68.4
MBI02_g07022_MAGBIO Magnolia biondii HOM05D006825 ORTHO05D008510 1.9e-07 59.3 74 43.2
TWI09G1238 Tripterygium wilfordii HOM05D006825 ORTHO05D008510 1.9e-07 59.3 38 65.8
FvH4_1g11660 Fragaria vesca HOM05D006825 ORTHO05D008510 2.4e-07 58.9 64 45.3
FAN19G1602 Fragaria x ananassa HOM05D006825 ORTHO05D008510 2.4e-07 58.9 64 45.3
FAN26G0347 Fragaria x ananassa HOM05D006825 ORTHO05D008510 2.4e-07 58.9 64 45.3
Ah.03g148930 Amaranthus hybridus HOM05D006825 ORTHO05D008510 3.2e-07 58.5 39 64.1
ECA232G1215 Erigeron canadensis HOM05D006825 ORTHO05D008510 3.2e-07 58.5 39 61.5
EL10Ac6g15487 Beta vulgaris HOM05D006825 ORTHO05D008510 4.2e-07 58.2 39 64.1
Oeu053236.1 Olea europaea HOM05D006825 ORTHO05D008510 4.2e-07 58.2 38 63.2
Rhsim10G0211100 Rhododendron simsii HOM05D006825 ORTHO05D008510 4.2e-07 58.2 39 61.5
Carub.0008s2832 Capsella rubella HOM05D006825 ORTHO05D008510 5.4e-07 57.8 39 69.2
Peaxi162Scf00635g00623 Petunia axillaris HOM05D006825 ORTHO05D008510 5.4e-07 57.8 39 64.1
RcHm_v2.0_Chr2g0099251 Rosa chinensis HOM05D006825 ORTHO05D008510 5.4e-07 57.8 37 67.6
CSS0030622 Camellia sinensis var. sinensis HOM05D006825 ORTHO05D008510 7.1e-07 57.4 39 64.1
CSS0032071 Camellia sinensis var. sinensis HOM05D006825 ORTHO05D008510 7.1e-07 57.4 39 64.1
Sp2g30510 Schrenkiella parvula HOM05D006825 ORTHO05D008510 7.1e-07 57.4 37 70.3
AL8G45350 Arabidopsis lyrata HOM05D006825 ORTHO05D008510 1.2e-06 56.6 39 66.7
A02p44590 Brassica napus HOM05D006825 ORTHO05D008510 1.2e-06 56.6 38 65.8
BraA02t09375Z Brassica rapa HOM05D006825 ORTHO05D008510 1.2e-06 56.6 38 65.8
ATR1098G103 Amborella trichopoda HOM05D006825 ORTHO05D008510 1.6e-06 56.2 71 40.8
CARHR281560 Cardamine hirsuta HOM05D006825 ORTHO05D008510 1.6e-06 56.2 39 66.7
Manes.01G148100 Manihot esculenta HOM05D006825 ORTHO05D008510 1.6e-06 56.2 37 64.9
MSTRG.14307 Avicennia marina HOM05D006825 ORTHO05D008510 2.7e-06 55.5 38 60.5
BolC2t12557H Brassica oleracea HOM05D006825 ORTHO05D008510 2.7e-06 55.5 38 63.2
SHI46760 Sapria himalayana HOM05D006825 ORTHO05D008510 2.7e-06 55.5 38 63.2
Cc07_g10910 Coffea canephora HOM05D006825 ORTHO05D008510 3.5e-06 55.1 37 59.5
Solyc03g033450.4 Solanum lycopersicum HOM05D006825 ORTHO05D008510 3.5e-06 55.1 39 59.0
Sopen03g006200 Solanum pennellii HOM05D006825 ORTHO05D008510 3.5e-06 55.1 39 59.0
PGSC0003DMG400022529 Solanum tuberosum HOM05D006825 ORTHO05D008510 3.5e-06 55.1 39 59.0
vmacro22141 Vaccinium macrocarpon HOM05D006825 ORTHO05D008510 3.5e-06 55.1 39 59.0
Migut.H02145 Erythranthe guttata HOM05D006825 ORTHO05D008510 4.6e-06 54.7 39 56.4
PSO541G4668 Papaver somniferum HOM05D006825 ORTHO05D008510 4.6e-06 54.7 71 39.4
THA.LOC104821331 Tarenaya hassleriana HOM05D006825 ORTHO05D008510 4.6e-06 54.7 39 61.5
Sc03g0003620 Simmondsia chinensis HOM05D006825 ORTHO05D008510 6.0e-06 54.3 39 61.5


User provided reference genes

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