Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 3.0e-51 204.9 104 100.0
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 6.9e-32 140.6 107 72.9
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 6.0e-28 127.5 106 69.8
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 1.8e-27 125.9 106 65.1
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 1.5e-26 122.9 107 64.5
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 1.8e-24 115.9 105 62.9
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.4e-24 115.5 108 63.9
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 9.0e-24 113.6 108 63.0
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 6.5e-22 107.5 107 59.8
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 2.5e-21 105.5 106 59.4
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 7.2e-21 104.0 107 54.2
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 1.6e-20 102.8 106 57.5
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 6.1e-20 100.9 107 52.3
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.3e-19 99.8 107 55.1
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 3.0e-19 98.6 105 54.3
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 3.9e-19 98.2 107 50.5
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 3.9e-19 98.2 107 50.5
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 5.1e-19 97.8 107 49.5
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 8.7e-19 97.1 107 51.4
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 8.7e-19 97.1 107 51.4
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 8.7e-19 97.1 107 53.3
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.5e-18 96.3 106 51.9
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 1.5e-18 96.3 106 50.0
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 1.5e-18 96.3 105 53.3
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.9e-18 95.9 105 53.3
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 1.9e-18 95.9 104 51.0
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 1.9e-18 95.9 105 51.4
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 2.5e-18 95.5 106 49.1
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 3.3e-18 95.1 107 50.5
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 3.3e-18 95.1 107 49.5
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 4.3e-18 94.7 107 49.5
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 7.4e-18 94.0 107 49.5
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 7.4e-18 94.0 106 48.1
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 9.7e-18 93.6 107 49.5
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 9.7e-18 93.6 107 49.5
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 1.3e-17 93.2 107 47.7
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.8e-17 92.0 106 48.1
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 3.7e-17 91.7 107 47.7
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 4.8e-17 91.3 102 50.0
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.8e-17 91.3 107 45.8
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 4.8e-17 91.3 107 46.7
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 6.3e-17 90.9 107 51.4
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 6.3e-17 90.9 106 48.1
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 6.3e-17 90.9 106 48.1
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 1.1e-16 90.1 109 50.5
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 1.1e-16 90.1 107 45.8
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.1e-16 90.1 107 46.7
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.8e-16 89.4 107 49.5
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 4.1e-16 88.2 108 46.3
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 4.1e-16 88.2 106 43.4
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 1.2e-15 86.7 108 48.1
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.5e-15 86.3 108 50.9
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 2.6e-15 85.5 107 44.9
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 3.4e-15 85.1 106 40.6
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 3.4e-15 85.1 107 44.9
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 3.4e-15 85.1 104 47.1
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.4e-15 85.1 106 41.5
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 4.5e-15 84.7 106 47.2
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 4.5e-15 84.7 106 44.3
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.0e-14 83.6 107 41.1
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.0e-14 83.6 107 43.0
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 1.3e-14 83.2 108 47.2
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.3e-14 83.2 106 44.3
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 1.7e-14 82.8 107 45.8
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 1.7e-14 82.8 97 46.4
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 2.2e-14 82.4 109 45.9
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 2.2e-14 82.4 107 45.8
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 5.0e-14 81.3 109 45.0
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 6.5e-14 80.9 109 45.0
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 6.5e-14 80.9 108 44.4
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 6.5e-14 80.9 109 45.0
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 6.5e-14 80.9 108 44.4
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 6.5e-14 80.9 109 45.0
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 6.5e-14 80.9 108 44.4
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 6.5e-14 80.9 108 45.4
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 6.5e-14 80.9 107 41.1
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 8.5e-14 80.5 106 42.5
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 8.5e-14 80.5 108 46.3
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 8.5e-14 80.5 109 45.0
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 8.5e-14 80.5 107 43.9
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 8.5e-14 80.5 108 44.4
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 1.1e-13 80.1 109 44.0
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 1.1e-13 80.1 106 40.6
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.4e-13 79.7 108 44.4
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 1.4e-13 79.7 108 43.5
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 1.9e-13 79.3 107 43.0
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 2.5e-13 79.0 106 39.6
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 3.2e-13 78.6 117 40.2
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 4.2e-13 78.2 106 41.5
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 4.2e-13 78.2 106 41.5
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 5.5e-13 77.8 109 43.1
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 5.5e-13 77.8 106 38.7
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 5.5e-13 77.8 108 43.5
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 5.5e-13 77.8 106 38.7
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 5.5e-13 77.8 107 43.9
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 5.5e-13 77.8 95 47.4
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 1.6e-12 76.3 101 43.6
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 2.7e-12 75.5 107 38.3
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 2.7e-12 75.5 106 40.6
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 3.6e-12 75.1 108 43.5
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 3.6e-12 75.1 107 44.9
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 3.6e-12 75.1 73 63.0
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 3.6e-12 75.1 106 41.5
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 3.6e-12 75.1 105 40.0
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 3.6e-12 75.1 108 41.7
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 4.6e-12 74.7 95 46.3
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 7.9e-12 73.9 107 42.1
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 3.0e-11 72.0 108 42.6
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 6.7e-11 70.9 108 43.5
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 8.8e-11 70.5 107 37.4
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.5e-10 69.7 104 43.3
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 7.4e-10 67.4 63 55.6
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 7.4e-10 67.4 63 55.6
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 9.7e-10 67.0 56 62.5
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.3e-09 66.6 110 36.4
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 5.3e-08 61.2 61 47.5
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 1.2e-07 60.1 57 49.1
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 3.4e-07 58.5 107 36.4
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.3e-06 56.6 105 39.0


User provided reference genes

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