Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.6e-116 423.3 314 100.0
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 2.1e-71 273.5 345 56.8
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.2e-67 258.8 328 55.8
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 4.2e-56 222.6 365 59.2
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 7.9e-47 191.8 331 43.8
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 1.3e-46 191.0 334 43.7
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 2.5e-45 186.8 335 43.6
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.3e-45 186.0 327 49.2
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 9.6e-45 184.9 335 45.1
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.3e-44 184.5 349 41.0
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 2.4e-43 180.3 306 45.1
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.1e-43 179.9 332 42.2
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 6.9e-43 178.7 334 41.9
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 9.0e-43 178.3 350 40.9
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.2e-42 177.9 334 43.1
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.2e-42 177.9 334 52.7
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 1.2e-42 177.9 332 41.6
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 1.5e-42 177.6 346 44.8
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.0e-42 177.2 329 43.2
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 2.6e-42 176.8 334 41.3
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-41 174.9 314 43.6
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 1.3e-41 174.5 334 50.9
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.2e-41 173.7 315 43.2
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.2e-41 173.7 315 43.2
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 8.4e-41 171.8 334 42.2
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 8.4e-41 171.8 328 39.9
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.1e-40 171.4 169 62.7
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.9e-40 170.6 335 40.3
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-40 169.5 328 42.1
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 5.5e-40 169.1 331 40.2
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.5e-40 169.1 335 40.0
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.2e-39 167.9 321 44.5
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.2e-39 167.9 329 40.4
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.2e-39 167.9 333 40.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-39 167.2 172 61.6
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 6.0e-39 165.6 343 39.7
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 6.0e-39 165.6 328 40.9
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 7.9e-39 165.2 328 43.0
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 7.9e-39 165.2 335 39.1
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.9e-39 165.2 335 39.1
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 7.9e-39 165.2 332 40.4
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.3e-38 164.5 345 38.8
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.3e-38 164.5 170 61.2
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.3e-38 164.5 333 40.5
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.8e-38 164.1 316 42.1
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 3.0e-38 163.3 336 39.9
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 8.7e-38 161.8 193 54.4
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 1.1e-37 161.4 335 39.4
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.1e-37 161.4 325 39.7
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 2.5e-37 160.2 333 39.9
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 2.5e-37 160.2 335 38.5
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 5.7e-37 159.1 331 40.5
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 7.4e-37 158.7 325 39.7
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 9.6e-37 158.3 351 39.3
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.6e-36 157.5 334 38.9
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.1e-36 157.1 329 38.6
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.8e-35 154.1 360 43.1
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.8e-35 154.1 336 39.3
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 3.1e-35 153.3 197 51.8
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 4.1e-35 152.9 332 38.9
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 5.3e-35 152.5 186 53.2
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.0e-34 150.6 333 38.4
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 2.0e-34 150.6 187 52.4
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.6e-34 150.2 194 51.5
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 4.5e-34 149.4 183 54.6
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 5.9e-34 149.1 173 56.6
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 5.9e-34 149.1 361 37.1
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 5.9e-34 149.1 194 51.5
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.9e-33 146.7 318 41.5
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 5.0e-33 146.0 173 53.8
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 5.0e-33 146.0 332 38.9
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.4e-32 144.4 195 51.8
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.9e-32 144.1 353 37.4
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 3.2e-32 143.3 198 50.5
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 5.5e-32 142.5 178 52.2
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 7.2e-32 142.1 178 51.7
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 9.3e-32 141.7 360 37.5
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.2e-31 141.4 338 37.0
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.6e-31 141.0 344 40.1
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 2.7e-31 140.2 357 38.9
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 3.6e-31 139.8 331 36.6
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 6.1e-31 139.0 185 50.8
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.0e-30 138.3 329 36.8
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.3e-30 137.9 340 36.8
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 2.3e-30 137.1 332 36.7
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 3.9e-30 136.3 334 36.2
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.1e-29 134.8 368 34.5
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 1.5e-29 134.4 347 36.3
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.5e-29 134.4 369 42.8
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.3e-29 132.9 331 39.3
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.3e-29 132.9 174 48.9
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 5.7e-29 132.5 169 53.8
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.3e-28 131.3 178 49.4
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-28 131.3 343 37.3
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.3e-28 131.3 341 36.1
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 2.2e-28 130.6 344 36.3
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.7e-28 129.8 345 38.6
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 6.3e-28 129.0 346 36.4
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 4.1e-27 126.3 347 36.9
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 4.1e-27 126.3 347 36.9
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 9.0e-27 125.2 372 34.1
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.2e-26 124.8 354 33.6
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.7e-25 120.9 187 44.9
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.9e-25 120.2 183 49.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 5.0e-25 119.4 346 34.1
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 5.0e-25 119.4 319 36.4
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 5.0e-25 119.4 165 53.9
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 6.5e-25 119.0 330 33.9
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.9e-24 117.5 369 32.2
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 3.2e-24 116.7 328 34.1
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 2.1e-23 114.0 369 32.5
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.1e-23 114.0 175 45.1
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 4.6e-23 112.8 346 34.4
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 4.6e-23 112.8 344 32.6
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 7.9e-23 112.1 319 32.6
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.0e-22 111.7 366 33.3
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.8e-22 110.9 180 45.6
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 2.6e-21 107.1 180 43.9
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 9.7e-21 105.1 171 43.3
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.1e-19 101.7 171 47.4
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 3.1e-19 100.1 165 41.2
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 4.1e-19 99.8 183 42.6
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 6.9e-19 99.0 184 39.7
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.6e-15 87.8 135 43.7
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 2.7e-15 87.0 168 42.3
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 8.8e-14 82.0 169 39.1
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 4.4e-13 79.7 180 38.9
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 1.7e-12 77.8 167 35.9
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 4.1e-11 73.2 159 40.9
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 9.4e-08 62.0 93 46.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 2.7e-07 60.5 150 37.3


User provided reference genes

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