Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 3.7e-79 298.1 149 100.0
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.1e-78 296.6 149 99.3
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 3.0e-73 278.5 149 93.3
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 9.8e-72 273.5 149 90.6
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 3.2e-67 258.5 149 85.2
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 9.5e-67 256.9 149 85.2
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 2.8e-66 255.4 149 83.9
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 4.7e-66 254.6 150 85.3
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 3.0e-65 251.9 149 83.9
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 3.1e-62 241.9 150 81.3
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 3.1e-62 241.9 150 82.0
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 5.4e-62 241.1 149 81.2
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 2.0e-61 239.2 150 82.0
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 7.8e-61 237.3 150 80.0
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.3e-60 236.5 150 80.7
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 1.7e-60 236.1 148 81.1
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 5.0e-60 234.6 150 80.0
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 5.0e-60 234.6 150 79.3
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.1e-59 233.4 148 79.7
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.5e-59 233.0 150 79.3
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.5e-59 233.0 148 80.4
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.5e-59 233.0 149 77.9
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.5e-59 232.3 148 79.7
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 7.3e-59 230.7 150 78.7
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 7.3e-59 230.7 150 78.7
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 9.5e-59 230.3 149 79.2
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.2e-58 229.9 150 79.3
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.2e-58 229.9 150 77.3
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 1.6e-58 229.6 150 78.0
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 1.6e-58 229.6 150 79.3
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.1e-58 229.2 150 77.3
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.8e-58 228.8 150 77.3
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 3.6e-58 228.4 149 78.5
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 4.7e-58 228.0 148 78.4
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 4.7e-58 228.0 150 78.0
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 8.0e-58 227.3 150 77.3
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 8.0e-58 227.3 150 78.0
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.0e-57 226.9 150 76.7
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.0e-57 226.9 150 78.7
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.0e-57 226.9 151 76.2
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.4e-57 226.5 149 75.8
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.8e-57 226.1 146 78.8
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 5.2e-57 224.6 149 75.8
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 8.9e-57 223.8 150 76.7
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.9e-57 223.8 150 78.0
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.2e-56 223.4 148 77.0
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.2e-56 223.4 150 76.7
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.5e-56 223.0 150 74.0
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.5e-56 223.0 149 77.2
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.5e-56 223.0 149 77.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 2.6e-56 222.2 148 76.4
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 2.6e-56 222.2 149 75.2
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 2.6e-56 222.2 147 74.8
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 3.4e-56 221.9 150 75.3
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 5.7e-56 221.1 150 75.3
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 7.5e-56 220.7 150 75.3
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 7.5e-56 220.7 150 75.3
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 1.3e-55 219.9 150 73.3
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.3e-55 219.9 150 74.0
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.7e-55 219.5 150 74.0
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 2.2e-55 219.2 150 74.0
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 2.9e-55 218.8 148 75.0
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.9e-55 218.8 150 76.0
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 3.7e-55 218.4 148 74.3
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.7e-55 218.4 150 74.0
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 3.7e-55 218.4 150 75.3
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 4.9e-55 218.0 150 74.0
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 6.4e-55 217.6 150 74.0
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 8.3e-55 217.2 150 74.7
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 8.3e-55 217.2 148 73.6
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 8.3e-55 217.2 177 67.8
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.1e-54 216.9 149 73.8
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.1e-54 216.9 150 72.7
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.4e-54 216.5 148 74.3
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 1.4e-54 216.5 144 77.8
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.4e-54 216.5 150 74.0
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-54 216.5 150 74.0
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 1.4e-54 216.5 148 74.3
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.8e-54 216.1 150 74.0
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.8e-54 216.1 150 74.0
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.8e-54 216.1 150 74.0
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.8e-54 216.1 150 73.3
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 2.4e-54 215.7 148 73.6
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 2.4e-54 215.7 148 74.3
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.4e-54 215.7 150 73.3
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.2e-54 215.3 150 74.7
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 4.1e-54 214.9 150 72.7
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 5.4e-54 214.5 150 74.7
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 5.4e-54 214.5 150 73.3
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 7.0e-54 214.2 150 72.7
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 7.0e-54 214.2 150 73.3
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 9.2e-54 213.8 150 72.7
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 9.2e-54 213.8 150 73.3
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 9.2e-54 213.8 150 72.7
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.6e-53 213.0 150 72.0
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.0e-53 212.6 150 73.3
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.7e-53 212.2 148 73.0
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 2.7e-53 212.2 149 73.8
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.7e-53 212.2 150 73.3
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.5e-53 211.8 148 73.0
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.5e-53 211.8 149 72.5
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 3.5e-53 211.8 148 73.6
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 3.5e-53 211.8 150 72.7
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 6.0e-53 211.1 148 73.0
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 6.0e-53 211.1 148 72.3
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 6.0e-53 211.1 150 72.0
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.0e-52 210.3 148 72.3
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 1.0e-52 210.3 150 70.7
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.3e-52 209.9 146 71.9
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 2.3e-52 209.1 164 67.7
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 3.0e-52 208.8 150 71.3
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 6.6e-52 207.6 150 70.0
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 6.6e-52 207.6 142 73.9
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 8.6e-52 207.2 153 70.6
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.1e-51 206.8 150 71.3
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 4.3e-51 204.9 153 69.3
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 5.6e-51 204.5 150 69.3
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.3e-51 204.1 144 72.9
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 7.3e-51 204.1 148 70.9
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.6e-50 201.8 191 60.7
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 8.0e-50 200.7 149 71.1
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 6.8e-49 197.6 129 78.3
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.6e-48 195.7 149 69.1
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 8.3e-47 190.7 184 58.7
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 2.4e-46 189.1 134 73.9
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 2.4e-46 189.1 150 66.0
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 7.0e-46 187.6 150 67.3
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 2.3e-44 182.6 149 65.8
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.6e-42 176.4 133 71.4
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.1e-42 176.0 170 61.2
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 6.2e-42 174.5 115 74.8
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 5.2e-41 171.4 114 78.9
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 1.2e-37 160.2 121 69.4
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.9e-35 152.9 86 86.0
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 3.3e-35 152.1 147 52.4
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 5.6e-35 151.4 146 50.0
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 7.3e-35 151.0 83 86.7
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 1.4e-33 146.7 146 49.3
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.4e-33 146.7 149 50.3
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.8e-33 144.4 160 53.8
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 4.4e-32 141.7 133 52.6
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 3.5e-29 132.1 137 54.7
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 6.6e-28 127.9 83 74.7
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.6e-26 122.1 98 67.3
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 1.8e-25 119.8 144 43.8
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 3.1e-25 119.0 153 47.1
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.0e-25 118.6 133 51.9
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 5.2e-25 118.2 206 36.4
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 2.0e-24 116.3 109 61.5
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.1e-22 110.5 141 44.0
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.6e-21 106.7 75 73.3
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.3e-20 103.6 64 78.1
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 5.1e-20 101.7 143 44.8
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 7.6e-16 87.8 64 68.8
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.2e-15 86.3 64 67.2
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 5.4e-14 81.6 63 61.9
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 2.1e-13 79.7 63 68.3
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 8.7e-12 74.3 68 58.8


User provided reference genes

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