Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1986g0040 Pisum sativum HOM05D014499 ORTHO05D016229 1.5e-47 192.6 104 100.0
Psat6g130760 Pisum sativum HOM05D014499 ORTHO05D016229 1.2e-44 183.0 104 95.2
Psat6g095800 Pisum sativum HOM05D014499 ORTHO05D016229 5.4e-37 157.5 102 85.3
Psat6g095840 Pisum sativum HOM05D014499 ORTHO05D016229 1.0e-35 153.3 111 83.8
Medtr1g033930 Medicago truncatula HOM05D014499 ORTHO05D016229 1.2e-15 86.7 102 49.0
TPR.G18737 Trifolium pratense HOM05D014499 ORTHO05D016229 1.5e-15 86.3 104 51.0
Medtr1g033790 Medicago truncatula HOM05D014499 ORTHO05D016229 2.2e-14 82.4 102 50.0
Medtr1g084950 Medicago truncatula HOM05D000307 ORTHO05D000166 5.0e-14 81.3 86 52.3
Ca_10447_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 1.4e-13 79.7 86 51.2
Ca_12469_v3 Cicer arietinum L. HOM05D014499 ORTHO05D016229 3.2e-13 78.6 78 46.2
Medtr1g033370 Medicago truncatula HOM05D014499 ORTHO05D016229 5.5e-13 77.8 109 46.8
TPR.G11133 Trifolium pratense HOM05D014499 ORTHO05D016229 5.5e-13 77.8 77 55.8
Medtr1g077320 Medicago truncatula HOM05D000307 ORTHO05D000166 1.6e-12 76.3 95 45.3
Ca_10207_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 4.6e-12 74.7 107 43.9
Medtr1g090697 Medicago truncatula HOM05D000307 ORTHO05D000166 1.8e-11 72.8 86 45.3
Medtr1g077390 Medicago truncatula HOM05D000307 ORTHO05D000166 3.0e-11 72.0 91 40.7
Medtr5g047580 Medicago truncatula HOM05D000307 ORTHO05D000166 3.0e-11 72.0 92 43.5
Psat6g172880 Pisum sativum HOM05D000307 ORTHO05D000166 3.0e-11 72.0 85 43.5
TPR.G34895 Trifolium pratense HOM05D000307 ORTHO05D000166 3.9e-11 71.6 92 42.4
Medtr4g028720 Medicago truncatula HOM05D000307 ORTHO05D000166 5.1e-11 71.2 95 43.2
TPR.G7598 Trifolium pratense HOM05D000307 ORTHO05D000166 5.1e-11 71.2 92 42.4
Medtr7g011950 Medicago truncatula HOM05D000307 ORTHO05D000166 8.8e-11 70.5 95 41.1
TPR.G31436 Trifolium pratense HOM05D000307 ORTHO05D000166 2.0e-10 69.3 91 42.9
TPR.G19679 Trifolium pratense HOM05D000307 ORTHO05D000166 3.3e-10 68.6 91 38.5
Medtr5g047560 Medicago truncatula HOM05D000307 ORTHO05D000166 7.4e-10 67.4 92 42.4
Psat6g156920 Pisum sativum HOM05D000307 ORTHO05D000166 7.4e-10 67.4 88 39.8
Ca_12462_v3 Cicer arietinum L. HOM05D000307 ORTHO05D016229 1.3e-09 66.6 103 38.8
TPR.G37782 Trifolium pratense HOM05D000307 ORTHO05D000166 1.3e-09 66.6 81 44.4
TPR.G37817 Trifolium pratense HOM05D000307 ORTHO05D000166 1.3e-09 66.6 86 41.9
Medtr1g090710 Medicago truncatula HOM05D000307 ORTHO05D000166 2.8e-09 65.5 94 42.6
Lj6g0002018 Lotus japonicus HOM05D000307 ORTHO05D000166 1.1e-08 63.5 84 41.7
Medtr1g090783 Medicago truncatula HOM05D000307 ORTHO05D000166 1.4e-08 63.2 83 43.4
Psat7g120000 Pisum sativum HOM05D000307 ORTHO05D000166 1.8e-08 62.8 73 42.5
Lj6g0013413 Lotus japonicus HOM05D000307 ORTHO05D000166 2.4e-08 62.4 84 40.5
Lj6g0006298 Lotus japonicus HOM05D000307 ORTHO05D000166 3.1e-08 62.0 84 40.5
MD08G1200100 Malus domestica HOM05D000307 ORTHO05D000166 3.1e-08 62.0 74 41.9
QL04p024253 Quercus lobata HOM05D000307 ORTHO05D000166 3.1e-08 62.0 73 49.3
Lj6g0016185 Lotus japonicus HOM05D000307 ORTHO05D000166 4.1e-08 61.6 84 39.3
TPR.G23204 Trifolium pratense HOM05D000307 ORTHO05D000166 4.1e-08 61.6 73 42.5
Glyma.11G214600 Glycine max HOM05D000307 ORTHO05D000166 5.3e-08 61.2 73 41.1
Glyma.18G042000 Glycine max HOM05D000307 ORTHO05D000166 5.3e-08 61.2 73 41.1
Lj6g0013084 Lotus japonicus HOM05D000307 ORTHO05D000166 5.3e-08 61.2 74 39.2
Phvul.001G228600 Phaseolus vulgaris HOM05D000307 ORTHO05D000166 5.3e-08 61.2 73 41.1
VMungo1383G0696 Vigna mungo HOM05D000307 ORTHO05D000166 5.3e-08 61.2 73 41.1
Ca_18733_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 6.9e-08 60.8 73 39.7
Lalb_Chr02g0147511 Lupinus albus HOM05D000307 ORTHO05D000166 6.9e-08 60.8 87 41.4
Lalb_Chr21g0310031 Lupinus albus HOM05D000307 ORTHO05D000166 6.9e-08 60.8 108 38.0
CSS0008755 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 9.1e-08 60.5 71 46.5
FAN05G0631 Fragaria x ananassa HOM05D000307 ORTHO05D000166 9.1e-08 60.5 74 40.5
GSVIVG01031333001 Vitis vinifera HOM05D000307 ORTHO05D000166 9.1e-08 60.5 74 45.9
arahy.Tifrunner.gnm1.ann1.137JBW Arachis hypogaea HOM05D000307 ORTHO05D000166 1.2e-07 60.1 73 43.8
Haze_15022 Corylus avellana HOM05D000307 ORTHO05D000166 1.2e-07 60.1 77 44.2
FAN02G0711 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.2e-07 60.1 74 43.2
arahy.Tifrunner.gnm1.ann1.XP8I2L Arachis hypogaea HOM05D000307 ORTHO05D000166 1.5e-07 59.7 73 43.8
Lalb_Chr02g0153091 Lupinus albus HOM05D000307 ORTHO05D000166 1.5e-07 59.7 91 39.6
DCAR_017625 Daucus carota HOM05D000307 ORTHO05D000166 2.0e-07 59.3 74 45.9
ECA246G5209 Erigeron canadensis HOM05D000307 ORTHO05D000166 2.0e-07 59.3 73 43.8
HanXRQChr15g0479321 Helianthus annuus HOM05D000307 ORTHO05D000166 2.0e-07 59.3 73 42.5
Lj6g0024616 Lotus japonicus HOM05D000307 ORTHO05D000166 2.0e-07 59.3 73 41.1
Haze_02940 Corylus avellana HOM05D000307 ORTHO05D000166 2.6e-07 58.9 73 46.6
Lalb_Chr18g0054491 Lupinus albus HOM05D000307 ORTHO05D000166 2.6e-07 58.9 69 43.5
Medtr3g065100 Medicago truncatula HOM05D000307 ORTHO05D000166 2.6e-07 58.9 74 39.2
arahy.Tifrunner.gnm1.ann1.E3QK4T Arachis hypogaea HOM05D000307 ORTHO05D000166 3.4e-07 58.5 73 43.8
HanXRQChr15g0479311 Helianthus annuus HOM05D000307 ORTHO05D000166 3.4e-07 58.5 73 42.5
QL03p011032 Quercus lobata HOM05D000307 ORTHO05D000166 3.4e-07 58.5 74 44.6
QL03p011092 Quercus lobata HOM05D000307 ORTHO05D000166 3.4e-07 58.5 74 45.9
FvH4_6g08460 Fragaria vesca HOM05D000307 ORTHO05D000166 4.5e-07 58.2 73 39.7
FAN02G2752 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.5e-07 58.2 73 39.7
FAN05G4635 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.5e-07 58.2 73 39.7
FAN14G3510 Fragaria x ananassa HOM05D000307 ORTHO05D000166 4.5e-07 58.2 73 39.7
Medtr1g077300 Medicago truncatula HOM05D000307 ORTHO05D000166 4.5e-07 58.2 85 40.0
Potri.005G002400 Populus trichocarpa HOM05D000307 ORTHO05D000166 4.5e-07 58.2 74 40.5
PGR042G0904 Punica granatum HOM05D000307 ORTHO05D000166 4.5e-07 58.2 74 44.6
Lj4g0006740 Lotus japonicus HOM05D000307 ORTHO05D000166 5.9e-07 57.8 74 37.8
Lj4g0023178 Lotus japonicus HOM05D000307 ORTHO05D000166 5.9e-07 57.8 74 37.8
arahy.Tifrunner.gnm1.ann1.V1US3H Arachis hypogaea HOM05D000307 ORTHO05D000166 7.7e-07 57.4 73 42.5
Cfa010997 Carpinus fangiana HOM05D000307 ORTHO05D000166 7.7e-07 57.4 73 45.2
HanXRQChr02g0058811 Helianthus annuus HOM05D000307 ORTHO05D000166 7.7e-07 57.4 73 41.1
HanXRQChr10g0296361 Helianthus annuus HOM05D000307 ORTHO05D000166 7.7e-07 57.4 73 41.1
Psat5g119400 Pisum sativum HOM05D000307 ORTHO05D000166 7.7e-07 57.4 74 37.8
FAN09G0930 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.0e-06 57.0 73 38.4
Lj4g0013065 Lotus japonicus HOM05D000307 ORTHO05D000166 1.0e-06 57.0 74 36.5
Phvul.007G205500 Phaseolus vulgaris HOM05D000307 ORTHO05D000166 1.0e-06 57.0 92 35.9
Prupe.1G533700 Prunus persica HOM05D000307 ORTHO05D000166 1.0e-06 57.0 74 44.6
CiPaw.13G019300 Carya illinoinensis HOM05D000307 ORTHO05D000166 1.3e-06 56.6 73 39.7
CiPaw.14G012200 Carya illinoinensis HOM05D000307 ORTHO05D000166 1.3e-06 56.6 73 41.1
Ca_15042_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 1.3e-06 56.6 73 37.0
Ca_17084_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 1.3e-06 56.6 73 39.7
FvH4_6g43410 Fragaria vesca HOM05D000307 ORTHO05D000166 1.3e-06 56.6 73 41.1
FAN14G0127 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.3e-06 56.6 73 41.1
Lj4g0004882 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj4g0006124 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj4g0007237 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj4g0012176 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj4g0012393 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 37.8
Lj4g0017653 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj4g0018608 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj4g0021048 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj4g0021083 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj4g0024546 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj4g0025943 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 74 36.5
Lj6g0014377 Lotus japonicus HOM05D000307 ORTHO05D000166 1.3e-06 56.6 84 39.3
RcHm_v2.0_Chr1g0321431 Rosa chinensis HOM05D000307 ORTHO05D000166 1.3e-06 56.6 73 41.1
arahy.Tifrunner.gnm1.ann1.TW1RKA Arachis hypogaea HOM05D000307 ORTHO05D000166 1.7e-06 56.2 73 39.7
CSS0049706 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.7e-06 56.2 73 45.2
Cfa004392 Carpinus fangiana HOM05D000307 ORTHO05D000166 1.7e-06 56.2 75 44.0
ClCG03G017900 Citrullus lanatus HOM05D000307 ORTHO05D000166 1.7e-06 56.2 73 41.1
Ciclev10006519m.g Citrus clementina HOM05D000307 ORTHO05D000166 1.7e-06 56.2 74 41.9
FAN02G1978 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.7e-06 56.2 73 41.1
Lalb_Chr02g0153541 Lupinus albus HOM05D000307 ORTHO05D000166 1.7e-06 56.2 77 39.0
MD15G1387300 Malus domestica HOM05D000307 ORTHO05D000166 1.7e-06 56.2 74 40.5
CiPaw.14G012400 Carya illinoinensis HOM05D000307 ORTHO05D000166 2.2e-06 55.8 73 42.5
Glyma.10G142900 Glycine max HOM05D000307 ORTHO05D000166 2.2e-06 55.8 80 38.8
Hma1.2p1_0759F.1_g213890 Hydrangea macrophylla HOM05D000307 ORTHO05D000166 2.2e-06 55.8 73 45.2
Lj5g0013862 Lotus japonicus HOM05D000307 ORTHO05D000166 2.2e-06 55.8 88 36.4
MD06G1013200 Malus domestica HOM05D000307 ORTHO05D000166 2.2e-06 55.8 82 34.1
Peaxi162Scf00487g00043 Petunia axillaris HOM05D000307 ORTHO05D000166 2.2e-06 55.8 73 43.8
Nn3g21966 Nelumbo nucifera HOM05D000307 ORTHO05D000166 2.9e-06 55.5 75 38.7
Peaxi162Scf00194g00005 Petunia axillaris HOM05D000307 ORTHO05D000166 2.9e-06 55.5 73 42.5
Peaxi162Scf00222g00046 Petunia axillaris HOM05D000307 ORTHO05D000166 2.9e-06 55.5 73 42.5
Peaxi162Scf00222g00424 Petunia axillaris HOM05D000307 ORTHO05D000166 2.9e-06 55.5 73 42.5
arahy.Tifrunner.gnm1.ann1.5M65ZF Arachis hypogaea HOM05D000307 ORTHO05D000166 3.8e-06 55.1 73 38.4
MELO3C015239.2 Cucumis melo HOM05D000307 ORTHO05D000166 3.8e-06 55.1 73 41.1
CsaV3_1G038060 Cucumis sativus L. HOM05D000307 ORTHO05D000166 3.8e-06 55.1 73 41.1
Lsat_1_v5_gn_3_36681 Lactuca sativa HOM05D000307 ORTHO05D000166 3.8e-06 55.1 73 35.6
Lalb_Chr18g0053561 Lupinus albus HOM05D000307 ORTHO05D000166 3.8e-06 55.1 73 34.2
Nitab4.5_0000001g0140 Nicotiana tabacum HOM05D000307 ORTHO05D000166 3.8e-06 55.1 70 42.9
Nitab4.5_0000009g0060 Nicotiana tabacum HOM05D000307 ORTHO05D000166 3.8e-06 55.1 70 42.9
Psat5g149040 Pisum sativum HOM05D000307 ORTHO05D000166 3.8e-06 55.1 71 39.4
CANSAT25G2689 Cannabis sativa HOM05D000307 ORTHO05D000166 5.0e-06 54.7 73 35.6
FAN09G4665 Fragaria x ananassa HOM05D000307 ORTHO05D000166 5.0e-06 54.7 70 42.9
Gohir.D08G273600 Gossypium hirsutum HOM05D000307 ORTHO05D000166 5.0e-06 54.7 73 38.4
Gorai.004G292000 Gossypium raimondii HOM05D000307 ORTHO05D000166 5.0e-06 54.7 73 38.4
Lalb_Chr18g0054831 Lupinus albus HOM05D000307 ORTHO05D000166 5.0e-06 54.7 78 35.9
Lalb_Chr21g0313611 Lupinus albus HOM05D000307 ORTHO05D000166 5.0e-06 54.7 78 35.9
Solyc01g102260.3 Solanum lycopersicum HOM05D000307 ORTHO05D000166 5.0e-06 54.7 73 41.1
Sopen01g044720 Solanum pennellii HOM05D000307 ORTHO05D000166 5.0e-06 54.7 73 41.1
TWI38G0721 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 5.0e-06 54.7 66 43.9
CiPaw.14G012300 Carya illinoinensis HOM05D000307 ORTHO05D000166 6.5e-06 54.3 73 35.6
Ciclev10013728m.g Citrus clementina HOM05D000307 ORTHO05D000166 6.5e-06 54.3 74 40.5
Lj2g0018661 Lotus japonicus HOM05D000307 ORTHO05D000166 6.5e-06 54.3 75 38.7
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 6.5e-06 54.3 72 41.7
SHI07318 Sapria himalayana HOM05D000307 ORTHO05D000166 6.5e-06 54.3 84 36.9
Sed0022320 Sechium edule HOM05D000307 ORTHO05D000166 6.5e-06 54.3 72 38.9
CSS0043934 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 8.5e-06 53.9 73 42.5
CSS0048763 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 8.5e-06 53.9 73 42.5
Ciclev10024463m.g Citrus clementina HOM05D000307 ORTHO05D000166 8.5e-06 53.9 74 35.1
Cc02_g35890 Coffea canephora HOM05D000307 ORTHO05D000166 8.5e-06 53.9 73 42.5
Dinv24518 Davidia involucrata HOM05D000307 ORTHO05D000166 8.5e-06 53.9 73 42.5
Hma1.2p1_1871F.1_g306090 Hydrangea macrophylla HOM05D000307 ORTHO05D000166 8.5e-06 53.9 73 43.8
Lalb_Chr15g0085881 Lupinus albus HOM05D000307 ORTHO05D000166 8.5e-06 53.9 66 42.4
Manes.08G107300 Manihot esculenta HOM05D000307 ORTHO05D000166 8.5e-06 53.9 74 39.2
Manes.09G181500 Manihot esculenta HOM05D000307 ORTHO05D000166 8.5e-06 53.9 73 42.5
Nitab4.5_0000001g0130 Nicotiana tabacum HOM05D000307 ORTHO05D000166 8.5e-06 53.9 70 42.9
RcHm_v2.0_Chr3g0458611 Rosa chinensis HOM05D000307 ORTHO05D000166 8.5e-06 53.9 73 38.4


User provided reference genes

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