Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 1.3e-122 443.0 212 100.0
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 1.6e-115 419.5 212 93.4
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 3.9e-114 414.8 212 92.5
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 4.7e-104 381.3 209 84.7
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.1e-103 380.2 209 85.6
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 3.4e-102 375.2 211 82.9
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.3e-101 373.2 208 82.2
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 1.7e-101 372.9 208 82.7
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 2.9e-101 372.1 208 82.2
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.7e-101 371.7 208 82.2
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.1e-100 370.2 232 76.7
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 1.9e-100 369.4 208 83.2
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 1.9e-100 369.4 208 83.7
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 3.2e-100 368.6 208 81.7
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.6e-99 366.3 208 81.7
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 2.1e-99 365.9 208 80.3
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 2.7e-99 365.5 208 80.8
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 4.6e-99 364.8 208 80.8
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 6.0e-99 364.4 208 80.3
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 6.0e-99 364.4 208 81.2
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 6.0e-99 364.4 208 80.3
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 6.0e-99 364.4 208 80.3
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 6.0e-99 364.4 208 80.3
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 1.0e-98 363.6 208 80.8
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.7e-98 362.8 208 82.2
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.7e-98 362.8 208 80.3
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 2.3e-98 362.5 208 80.3
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.3e-98 362.5 208 79.8
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 3.0e-98 362.1 208 82.2
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 5.1e-98 361.3 208 81.2
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 5.1e-98 361.3 208 80.3
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 6.6e-98 360.9 209 79.4
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.5e-97 359.8 208 78.8
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 2.5e-97 359.0 208 78.8
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 2.5e-97 359.0 208 78.8
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 5.6e-97 357.8 208 79.3
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 5.6e-97 357.8 208 78.8
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 7.3e-97 357.5 208 80.8
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.2e-96 356.7 208 79.3
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.6e-96 356.3 208 81.2
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.6e-96 356.3 208 78.8
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 1.6e-96 356.3 209 79.9
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.8e-96 355.5 208 79.3
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.7e-96 354.8 209 80.4
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 4.7e-96 354.8 209 80.4
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 4.7e-96 354.8 208 80.3
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 8.1e-96 354.0 208 79.3
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 1.4e-95 353.2 207 78.3
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 1.4e-95 353.2 208 77.4
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.4e-95 353.2 208 80.3
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.4e-95 353.2 208 78.4
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.8e-95 352.8 207 78.7
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.8e-95 352.8 208 77.4
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 2.4e-95 352.4 201 80.6
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 3.1e-95 352.1 209 79.9
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 4.0e-95 351.7 208 77.4
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 5.2e-95 351.3 198 81.8
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 5.2e-95 351.3 208 79.3
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 5.2e-95 351.3 208 78.4
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 6.8e-95 350.9 210 78.6
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 8.9e-95 350.5 208 77.9
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 8.9e-95 350.5 208 78.4
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.5e-94 349.7 208 76.9
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 2.0e-94 349.4 207 79.2
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 4.4e-94 348.2 203 78.8
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 5.8e-94 347.8 203 79.3
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 5.8e-94 347.8 212 76.9
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 7.6e-94 347.4 208 76.4
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 7.6e-94 347.4 208 76.4
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 9.9e-94 347.1 208 76.0
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.3e-93 346.7 203 79.3
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 1.7e-93 346.3 211 73.9
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.7e-93 346.3 208 75.5
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 2.9e-93 345.5 209 75.6
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 2.9e-93 345.5 209 75.6
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 2.9e-93 345.5 209 74.2
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.8e-93 345.1 203 78.8
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 4.9e-93 344.7 211 77.3
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 4.9e-93 344.7 208 73.6
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 6.4e-93 344.4 211 73.5
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.1e-92 343.6 211 73.5
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 1.1e-92 343.6 206 75.7
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.4e-92 343.2 208 74.5
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 1.4e-92 343.2 201 78.6
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.9e-92 342.8 211 76.3
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 2.4e-92 342.4 209 74.6
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 2.4e-92 342.4 207 74.9
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.2e-92 342.0 203 77.8
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 3.2e-92 342.0 208 74.0
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 5.4e-92 341.3 208 75.5
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 9.3e-92 340.5 205 75.1
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 9.3e-92 340.5 209 74.6
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 9.3e-92 340.5 208 77.4
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 9.3e-92 340.5 208 76.4
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 1.2e-91 340.1 212 73.1
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 2.7e-91 339.0 208 74.5
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 2.7e-91 339.0 193 80.8
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 7.8e-91 337.4 210 72.4
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 7.8e-91 337.4 228 70.2
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 7.8e-91 337.4 218 75.2
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 1.3e-90 336.7 211 71.6
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.3e-90 336.7 208 75.0
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 3.0e-90 335.5 210 72.4
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 8.7e-90 334.0 210 71.9
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 1.5e-89 333.2 210 71.9
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 4.3e-89 331.6 294 58.2
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 7.3e-89 330.9 208 74.5
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 5.3e-87 324.7 202 73.3
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 2.0e-86 322.8 209 71.3
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 4.4e-86 321.6 209 71.3
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 7.6e-86 320.9 248 65.7
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 1.7e-85 319.7 202 72.8
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.4e-84 316.6 203 70.9
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 2.4e-84 315.8 202 70.3
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 9.3e-84 313.9 210 71.4
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 3.0e-82 308.9 173 85.0
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.3e-81 305.4 204 71.1
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 6.9e-79 297.7 173 82.1
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 1.5e-78 296.6 166 81.3
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 1.3e-72 276.9 145 87.6
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 6.2e-72 274.6 145 86.2
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 9.3e-68 260.8 425 39.1
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.7e-64 248.8 172 69.2
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 6.2e-64 248.1 145 75.2
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 6.9e-63 244.6 204 59.8
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.6e-51 206.8 141 68.1
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 1.0e-50 204.1 113 79.6
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 2.3e-50 203.0 125 77.6
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 2.8e-48 196.1 200 50.5
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.4e-47 193.7 201 48.3
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 7.2e-44 181.4 109 79.8
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 5.9e-38 161.8 195 44.1
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 8.5e-37 157.9 161 52.2
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 4.2e-36 155.6 88 77.3
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 4.0e-34 149.1 96 77.1
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 4.4e-33 145.6 100 70.0
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 4.8e-32 142.1 80 82.5
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 9.1e-31 137.9 74 81.1
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 6.5e-21 105.1 75 69.3
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 9.4e-20 101.3 64 76.6
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 8.8e-18 94.7 64 70.3
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 2.0e-17 93.6 72 65.3
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.6e-14 84.0 58 74.1
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 3.4e-09 66.2 40 80.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 9.8e-09 64.7 35 74.3
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 9.8e-09 64.7 35 71.4
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 2.9e-08 63.2 32 87.5
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 3.7e-08 62.8 59 62.7


User provided reference genes

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