Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.6e-106 389.4 192 100.0
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 1.9e-96 355.9 192 88.5
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 7.8e-90 334.0 192 84.9
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 9.3e-83 310.5 193 80.3
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.3e-81 305.8 170 85.3
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.5e-80 303.1 170 86.5
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.6e-79 299.7 193 76.2
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 4.8e-79 298.1 193 76.7
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.3e-71 273.5 180 73.3
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.6e-71 273.1 192 71.9
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 3.5e-66 255.4 207 63.8
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.0e-60 237.3 199 63.3
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.9e-59 233.0 199 62.3
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 2.1e-58 229.6 180 66.1
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 2.3e-57 226.1 199 62.8
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 1.1e-56 223.8 191 61.8
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.5e-56 223.4 172 63.4
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 2.5e-56 222.6 126 84.1
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 5.7e-56 221.5 161 68.3
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 7.4e-56 221.1 199 58.3
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.3e-55 220.3 189 60.3
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 4.8e-55 218.4 188 59.6
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 2.4e-54 216.1 189 63.0
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 5.9e-53 211.5 179 58.7
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 7.7e-53 211.1 186 60.8
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.3e-52 210.3 167 61.1
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 2.2e-52 209.5 189 57.1
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.9e-52 209.1 165 62.4
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 5.0e-52 208.4 198 57.1
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 6.5e-52 208.0 185 60.0
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 6.5e-52 208.0 180 56.7
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 8.5e-52 207.6 182 60.4
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 8.5e-52 207.6 181 60.8
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.1e-51 207.2 176 58.0
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.1e-51 207.2 182 59.9
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.2e-51 205.7 179 57.5
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 7.2e-51 204.5 185 58.9
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 2.1e-50 203.0 188 57.4
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.7e-50 202.6 185 58.4
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 4.7e-50 201.8 178 57.9
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 6.1e-50 201.4 184 59.2
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 7.9e-50 201.1 192 57.3
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 7.9e-50 201.1 196 54.6
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.8e-49 199.9 173 61.3
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.8e-49 199.9 277 43.7
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.8e-49 199.9 186 57.5
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 8.8e-49 197.6 173 61.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 4.4e-48 195.3 155 65.2
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 9.7e-48 194.1 166 60.8
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.3e-47 193.7 170 61.8
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.7e-47 193.4 151 63.6
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 2.8e-47 192.6 167 59.3
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 6.3e-47 191.4 155 65.8
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 8.2e-47 191.0 199 54.3
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 8.2e-47 191.0 188 55.9
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 1.1e-46 190.7 171 59.1
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.4e-46 190.3 185 55.1
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.1e-46 189.1 166 60.2
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 4.1e-46 188.7 194 52.6
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 5.3e-46 188.3 188 55.9
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 9.1e-46 187.6 142 70.4
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 9.1e-46 187.6 180 55.0
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-45 187.2 187 55.1
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-45 187.2 187 55.6
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 1.5e-45 186.8 193 52.8
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 2.6e-45 186.0 167 59.3
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 4.5e-45 185.3 191 53.9
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 4.5e-45 185.3 185 55.7
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 5.9e-45 184.9 197 53.8
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 7.7e-45 184.5 160 58.8
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.3e-44 183.7 178 54.5
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 2.9e-44 182.6 189 54.5
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 2.9e-44 182.6 189 54.5
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 2.9e-44 182.6 189 54.5
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 6.5e-44 181.4 155 58.7
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 8.5e-44 181.0 175 56.6
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.1e-43 180.6 183 52.5
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.4e-43 180.3 195 52.3
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 4.2e-43 178.7 180 55.0
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 9.4e-43 177.6 182 52.7
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 1.6e-42 176.8 180 53.3
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.7e-42 176.0 184 50.5
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 3.6e-42 175.6 166 57.8
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 6.1e-42 174.9 168 56.5
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 8.0e-42 174.5 157 55.4
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.4e-41 173.7 179 54.2
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.4e-41 173.7 163 57.7
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 1.4e-41 173.7 144 59.0
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.8e-41 173.3 176 54.0
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 3.0e-41 172.6 177 51.4
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.0e-41 172.6 143 64.3
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 3.0e-41 172.6 156 56.4
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 3.9e-41 172.2 174 53.4
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.1e-40 170.6 176 51.7
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 9.7e-40 167.5 180 52.8
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 9.7e-40 167.5 180 50.6
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.8e-39 166.0 158 53.2
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.6e-37 160.2 176 48.9
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 5.9e-37 158.3 191 46.6
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 7.7e-37 157.9 169 52.1
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.7e-36 156.8 145 55.9
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 4.2e-35 152.1 116 68.1
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-34 149.4 146 56.2
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 2.3e-33 146.4 141 58.9
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 5.2e-33 145.2 193 47.2
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.2e-32 144.1 130 59.2
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 5.7e-32 141.7 120 61.7
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.4e-30 137.1 145 53.1
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 1.6e-29 133.7 138 52.9
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 4.5e-29 132.1 157 47.1
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 2.2e-28 129.8 138 52.2
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 6.5e-28 128.3 143 50.3
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 1.1e-27 127.5 105 58.1
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 1.1e-27 127.5 113 61.9
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 2.5e-27 126.3 159 43.4
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 9.4e-27 124.4 178 40.4
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 8.0e-26 121.3 138 50.7
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 8.8e-25 117.9 176 43.8
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 8.8e-25 117.9 176 43.8
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.5e-24 117.1 183 40.4
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.3e-23 114.0 138 47.1
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 4.8e-23 112.1 117 54.7
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 3.8e-20 102.4 94 56.4
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 3.0e-17 92.8 69 66.7
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 1.3e-15 87.4 96 52.1
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.3e-15 87.4 83 53.0
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 5.9e-13 78.6 65 60.0
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 9.5e-11 71.2 74 54.1
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 1.2e-10 70.9 147 32.7
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-09 65.5 100 36.0
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.6e-08 63.2 44 63.6
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 5.8e-08 62.0 164 27.4
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.3e-07 60.8 97 44.3
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.1e-06 57.8 65 41.5


User provided reference genes

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