Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1712g0080 Pisum sativum HOM05D000002 ORTHO05D001134 4.7e-97 357.8 178 100.0
Psat0s3596g0040 Pisum sativum HOM05D000002 ORTHO05D001134 5.1e-51 204.9 167 64.1
Rhsim12G0089000 Rhododendron simsii HOM05D000002 ORTHO05D001134 2.1e-20 103.2 164 40.9
Rhsim12G0088900 Rhododendron simsii HOM05D000002 ORTHO05D001134 1.4e-19 100.5 178 38.8
Atru.chr7.1 Acer truncatum HOM05D000002 ORTHO05D001134 6.7e-19 98.2 164 39.0
CANSAT54G2682 Cannabis sativa HOM05D000002 ORTHO05D024746 8.8e-19 97.8 170 33.5
CANSAT25G2057 Cannabis sativa HOM05D000002 ORTHO05D001134 4.1e-16 89.0 150 32.7
CANSAT54G2894 Cannabis sativa HOM05D000002 ORTHO05D001134 6.9e-16 88.2 151 33.1
CiPaw.09G096200 Carya illinoinensis HOM05D000002 ORTHO05D001134 6.9e-16 88.2 177 35.0
TWI31G0546 Tripterygium wilfordii HOM05D000002 ORTHO05D001134 6.1e-12 75.1 166 31.3
ECA232G3490 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-11 72.0 158 30.4
CANSAT01G0154 Cannabis sativa HOM05D000002 ORTHO05D001134 8.8e-11 71.2 92 39.1
CANSAT01G0412 Cannabis sativa HOM05D000002 ORTHO05D001134 8.8e-11 71.2 92 39.1
ECA246G0345 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-10 70.9 158 32.3
ECA247G1980 Erigeron canadensis HOM05D000315 ORTHO05D000001 1.1e-10 70.9 158 30.4
ECA233G2911 Erigeron canadensis HOM05D000002 ORTHO05D001134 2.6e-10 69.7 163 29.4
HanXRQChr02g0050701 Helianthus annuus HOM05D000002 ORTHO05D000001 3.3e-10 69.3 164 32.9
HanXRQChr05g0163231 Helianthus annuus HOM05D000002 ORTHO05D000001 4.4e-10 68.9 164 32.9
HanXRQChr13g0409601 Helianthus annuus HOM05D000002 ORTHO05D001134 4.4e-10 68.9 164 32.9
HanXRQChr14g0441811 Helianthus annuus HOM05D000002 ORTHO05D000001 4.4e-10 68.9 164 33.5
HanXRQChr03g0082121 Helianthus annuus HOM05D000002 ORTHO05D000001 5.7e-10 68.6 164 32.3
HanXRQChr05g0135361 Helianthus annuus HOM05D000002 ORTHO05D000001 5.7e-10 68.6 164 32.3
CANSAT64G1210 Cannabis sativa HOM05D000002 ORTHO05D001134 7.4e-10 68.2 140 33.6
CSS0013561 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 9.7e-10 67.8 143 35.0
CSS0019952 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 9.7e-10 67.8 143 35.0
CSS0031421 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 9.7e-10 67.8 143 35.0
CSS0040386 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 9.7e-10 67.8 143 35.0
CANSAT11G1596 Cannabis sativa HOM05D000002 ORTHO05D001134 9.7e-10 67.8 140 36.4
CiPaw.08G099000 Carya illinoinensis HOM05D000002 ORTHO05D001134 9.7e-10 67.8 169 32.0
CiPaw.09G118100 Carya illinoinensis HOM05D000002 ORTHO05D001134 9.7e-10 67.8 165 32.7
Hma1.2p1_1637F.1_g294870 Hydrangea macrophylla HOM05D000002 ORTHO05D001134 9.7e-10 67.8 67 49.3
TPR.G29589 Trifolium pratense HOM05D000002 ORTHO05D001134 9.7e-10 67.8 145 35.2
CANSAT01G0351 Cannabis sativa HOM05D000002 ORTHO05D001134 1.3e-09 67.4 140 33.6
CANSAT54G2195 Cannabis sativa HOM05D000002 ORTHO05D001134 1.3e-09 67.4 140 33.6
CANSAT64G1389 Cannabis sativa HOM05D000002 ORTHO05D001134 1.3e-09 67.4 140 33.6
CANSAT35G0681 Cannabis sativa HOM05D000002 ORTHO05D001134 1.7e-09 67.0 140 35.7
HanXRQChr15g0477091 Helianthus annuus HOM05D000002 ORTHO05D001134 3.7e-09 65.9 160 33.1
RcHm_v2.0_Chr5g0001181 Rosa chinensis HOM05D000002 ORTHO05D001134 3.7e-09 65.9 168 33.9
CSS0032171 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.8e-09 65.5 167 31.1
CSS0043616 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.8e-09 65.5 143 34.3
CSS0044748 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.8e-09 65.5 143 34.3
CANSAT01G0629 Cannabis sativa HOM05D000002 ORTHO05D001134 4.8e-09 65.5 140 35.0
CANSAT25G3473 Cannabis sativa HOM05D000002 ORTHO05D024746 4.8e-09 65.5 136 32.4
ECA232G1993 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.8e-09 65.5 94 36.2
RcHm_v2.0_Chr5g0076631 Rosa chinensis HOM05D000002 ORTHO05D001134 4.8e-09 65.5 169 34.3
CSS0005787 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 6.3e-09 65.1 143 34.3
CSS0045046 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 6.3e-09 65.1 143 34.3
CSS0047428 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 6.3e-09 65.1 143 34.3
CSS0048219 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 6.3e-09 65.1 143 34.3
CANSAT78G1580 Cannabis sativa HOM05D000002 ORTHO05D001134 6.3e-09 65.1 140 32.9
CSS0015894 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 8.2e-09 64.7 143 34.3
AUR62040346 Chenopodium quinoa HOM05D000002 ORTHO05D001134 8.2e-09 64.7 81 43.2
RcHm_v2.0_Chr3g0467151 Rosa chinensis HOM05D000002 ORTHO05D001134 8.2e-09 64.7 174 31.6
EL10Ac6g13863 Beta vulgaris HOM05D000002 ORTHO05D001134 1.4e-08 63.9 141 36.2
CSS0001359 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 1.4e-08 63.9 143 33.6
HanXRQChr06g0180631 Helianthus annuus HOM05D000002 ORTHO05D000001 1.4e-08 63.9 164 29.3
ECA240G2188 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-08 63.5 161 29.2
MD11G1271900 Malus domestica HOM05D000002 ORTHO05D001134 1.8e-08 63.5 161 32.3
ECA233G0511 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.4e-08 63.2 158 29.7
CSS0012254 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-08 62.8 164 32.9
Ca_23898_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.1e-08 62.8 140 34.3
HanXRQChr04g0123831 Helianthus annuus HOM05D000002 ORTHO05D000001 3.1e-08 62.8 164 31.7
RcHm_v2.0_Chr4g0441691 Rosa chinensis HOM05D000002 ORTHO05D001134 3.1e-08 62.8 168 33.9
CANSAT01G2951 Cannabis sativa HOM05D000002 ORTHO05D001134 4.1e-08 62.4 80 40.0
RcHm_v2.0_Chr5g0069541 Rosa chinensis HOM05D000002 ORTHO05D001134 4.1e-08 62.4 159 32.1
CSS0004348 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 5.3e-08 62.0 83 41.0
CSS0005552 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-08 62.0 165 29.7
CSS0022146 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 5.3e-08 62.0 159 30.8
CSS0025606 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-08 62.0 165 29.7
CSS0038035 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-08 62.0 165 29.7
CSS0040508 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-08 62.0 148 33.8
CANSAT11G0903 Cannabis sativa HOM05D000002 ORTHO05D001134 5.3e-08 62.0 89 39.3
CSS0034105 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 7.0e-08 61.6 151 32.5
Sopen05g027630 Solanum pennellii HOM05D000002 ORTHO05D001134 7.0e-08 61.6 146 30.8
CSS0047879 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 9.1e-08 61.2 161 29.8
RcHm_v2.0_Chr5g0079181 Rosa chinensis HOM05D000002 ORTHO05D001134 9.1e-08 61.2 158 29.7
Ah.10g026270 Amaranthus hybridus HOM05D000002 ORTHO05D001134 1.2e-07 60.8 91 38.5
CANSAT56G2162 Cannabis sativa HOM05D000002 ORTHO05D001134 1.2e-07 60.8 69 43.5
AUR62032617 Chenopodium quinoa HOM05D000202 ORTHO05D001134 1.6e-07 60.5 132 34.1
Migut.M00507 Erythranthe guttata HOM05D000002 ORTHO05D001134 1.6e-07 60.5 140 32.9
Sopen05g002730 Solanum pennellii HOM05D001102 ORTHO05D001018 1.6e-07 60.5 140 33.6
CSS0019998 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 2.0e-07 60.1 166 30.1
CSS0039051 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 2.6e-07 59.7 143 32.2
MD03G1045100 Malus domestica HOM05D000002 ORTHO05D001134 2.6e-07 59.7 161 28.6
MD04G1043300 Malus domestica HOM05D000002 ORTHO05D000001 2.6e-07 59.7 188 27.1
Ah.05g174010 Amaranthus hybridus HOM05D000002 ORTHO05D001134 3.5e-07 59.3 107 36.4
CSS0049155 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 3.5e-07 59.3 167 28.1
Cpa.g.sc33.42 Carica papaya HOM05D000002 ORTHO05D001134 3.5e-07 59.3 107 30.8
MD15G1002900 Malus domestica HOM05D000002 ORTHO05D001134 3.5e-07 59.3 176 28.4
RcHm_v2.0_Chr1g0365511 Rosa chinensis HOM05D000002 ORTHO05D001134 3.5e-07 59.3 170 27.1
RcHm_v2.0_Chr7g0181641 Rosa chinensis HOM05D000002 ORTHO05D001134 3.5e-07 59.3 159 30.2
CSS0016992 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.5e-07 58.9 151 31.8
Cpa.g.sc4.185 Carica papaya HOM05D000002 ORTHO05D001134 4.5e-07 58.9 107 30.8
RcHm_v2.0_Chr5g0068061 Rosa chinensis HOM05D000002 ORTHO05D001134 4.5e-07 58.9 94 38.3
Cpa.g.sc495.1 Carica papaya HOM05D000002 ORTHO05D001134 5.9e-07 58.5 107 30.8
RcHm_v2.0_Chr7g0195071 Rosa chinensis HOM05D000002 ORTHO05D001134 5.9e-07 58.5 169 32.5
RcHm_v2.0_Chr1g0375621 Rosa chinensis HOM05D000002 ORTHO05D001134 7.7e-07 58.2 148 27.7
CSS0013984 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 1.0e-06 57.8 174 28.2
CSS0045113 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 1.0e-06 57.8 163 28.8
CSS0045864 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-06 57.8 130 33.1
MD15G1059300 Malus domestica HOM05D000002 ORTHO05D001134 1.0e-06 57.8 162 30.2
RcHm_v2.0_Chr3g0453771 Rosa chinensis HOM05D000002 ORTHO05D001134 1.0e-06 57.8 170 27.1
RcHm_v2.0_Chr7g0188321 Rosa chinensis HOM05D000002 ORTHO05D001134 1.3e-06 57.4 169 27.8
Rhsim03G0077200 Rhododendron simsii HOM05D000002 ORTHO05D001134 1.7e-06 57.0 78 37.2
Nn8g41125 Nelumbo nucifera HOM05D000002 ORTHO05D001134 2.9e-06 56.2 80 35.0
CiPaw.10G127600 Carya illinoinensis HOM05D000002 ORTHO05D001134 3.8e-06 55.8 158 27.2
RcHm_v2.0_Chr1g0324761 Rosa chinensis HOM05D000002 ORTHO05D001134 3.8e-06 55.8 167 29.3
Sp7g11690 Schrenkiella parvula HOM05D000002 ORTHO05D001134 3.8e-06 55.8 128 30.5
RcHm_v2.0_Chr1g0336961 Rosa chinensis HOM05D000002 ORTHO05D001134 5.0e-06 55.5 165 30.3
RcHm_v2.0_Chr4g0390941 Rosa chinensis HOM05D000002 ORTHO05D001134 5.0e-06 55.5 176 29.0
Rhsim10G0199300 Rhododendron simsii HOM05D000002 ORTHO05D001134 6.5e-06 55.1 90 34.4
RcHm_v2.0_Chr5g0063421 Rosa chinensis HOM05D000002 ORTHO05D001134 8.5e-06 54.7 170 28.2
Sabra19G0009600 Salix brachista HOM05D000002 ORTHO05D001134 8.5e-06 54.7 81 37.0


User provided reference genes

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