Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1683g0040 Pisum sativum HOM05D003556 ORTHO05D003404 7.4e-90 334.0 180 100.0
Ca_09185_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 5.9e-63 244.6 160 80.0
TPR.G9645 Trifolium pratense HOM05D003556 ORTHO05D003404 2.9e-62 242.3 176 73.9
Medtr7g108865 Medicago truncatula HOM05D003556 ORTHO05D003404 4.6e-60 235.0 177 69.5
Lj1g0023613 Lotus japonicus HOM05D003556 ORTHO05D003404 6.1e-60 234.6 179 70.4
Lalb_Chr04g0259851 Lupinus albus HOM05D003556 ORTHO05D003404 3.4e-55 218.8 177 67.2
Glyma.19G212200 Glycine max HOM05D003556 ORTHO05D003404 3.8e-54 215.3 173 65.3
Phvul.001G208900 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 9.4e-53 210.7 192 62.0
VMungo1309G0611 Vigna mungo HOM05D003556 ORTHO05D003404 1.2e-52 210.3 173 66.5
Glyma.03G215700 Glycine max HOM05D003556 ORTHO05D003404 4.7e-52 208.4 174 64.9
Phvul.001G208700 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.3e-51 206.1 185 62.7
Phvul.001G209000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 6.7e-51 204.5 185 62.7
Lalb_Chr15g0078461 Lupinus albus HOM05D003556 ORTHO05D003404 2.6e-50 202.6 176 63.1
Phvul.009G236000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.6e-50 202.6 178 60.7
Phvul.001G208800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 4.8e-49 198.4 192 60.9
VMungo1383G0005 Vigna mungo HOM05D003556 ORTHO05D003404 4.1e-48 195.3 186 58.6
Phvul.001G208600 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 8.5e-46 187.6 191 58.1
VMungo1383G2652 Vigna mungo HOM05D003556 ORTHO05D003404 2.5e-45 186.0 176 60.8
Lj5g0004990 Lotus japonicus HOM05D003556 ORTHO05D003404 7.2e-45 184.5 169 60.9
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 2.7e-44 182.6 166 60.8
Phvul.007G246800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 4.7e-44 181.8 173 60.7
Lalb_Chr02g0146451 Lupinus albus HOM05D003556 ORTHO05D003404 8.0e-44 181.0 168 57.7
Glyma.02G016700 Glycine max HOM05D003556 ORTHO05D003404 1.0e-43 180.6 168 58.9
VMungo0331G0621 Vigna mungo HOM05D003556 ORTHO05D003404 3.0e-43 179.1 174 59.8
Medtr4g071020 Medicago truncatula HOM05D003556 ORTHO05D003404 5.7e-42 174.9 170 60.6
Glyma.10G017300 Glycine max HOM05D003556 ORTHO05D003404 1.7e-41 173.3 171 57.9
VMungo1309G2342 Vigna mungo HOM05D003556 ORTHO05D003404 1.1e-40 170.6 174 58.6
TPR.G30505 Trifolium pratense HOM05D002265 ORTHO05D002400 1.8e-40 169.9 173 57.8
Psat7g183080 Pisum sativum HOM05D003556 ORTHO05D003404 4.1e-40 168.7 175 54.9
Ca_20910_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 5.3e-40 168.3 190 54.7
arahy.Tifrunner.gnm1.ann1.HDU51Y Arachis hypogaea HOM05D003556 ORTHO05D003404 3.5e-39 165.6 182 52.7
Lalb_Chr06g0166521 Lupinus albus HOM05D003556 ORTHO05D003404 7.7e-39 164.5 172 54.7
arahy.Tifrunner.gnm1.ann1.GMFP2F Arachis hypogaea HOM05D003556 ORTHO05D003404 1.0e-38 164.1 186 51.1
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 6.6e-22 108.2 165 39.4
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 5.6e-21 105.1 133 42.9
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 4.7e-20 102.1 177 37.3
CANSAT25G1336 Cannabis sativa HOM05D003556 ORTHO05D003404 1.4e-19 100.5 149 39.6
Cfa005888 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.0e-19 99.0 168 36.3
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 6.8e-19 98.2 141 39.7
FvH4_2g25950 Fragaria vesca HOM05D003556 ORTHO05D003404 6.8e-19 98.2 156 36.5
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 6.8e-19 98.2 155 36.8
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 6.8e-19 98.2 175 37.7
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.2e-18 97.4 155 36.1
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 1.5e-18 97.1 174 37.9
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 2.0e-18 96.7 156 35.9
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 7.5e-18 94.7 149 38.3
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 7.5e-18 94.7 158 38.0
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 1.7e-17 93.6 151 38.4
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 1.7e-17 93.6 172 37.8
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 2.2e-17 93.2 173 36.4
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 3.7e-17 92.4 170 35.3
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 6.4e-17 91.7 181 37.0
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 8.3e-17 91.3 155 35.5
MD03G1290800 Malus domestica HOM05D003556 ORTHO05D003404 1.1e-16 90.9 149 38.3
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 1.4e-16 90.5 151 37.1
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 2.4e-16 89.7 142 37.3
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 5.4e-16 88.6 153 33.3
BcaB01g02439 Brassica carinata HOM05D003556 ORTHO05D003404 7.0e-16 88.2 155 34.8
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 2.0e-15 86.7 143 35.0
Rhsim13G0008900 Rhododendron simsii HOM05D003556 ORTHO05D003404 2.0e-15 86.7 153 34.6
AL1G63880 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 2.7e-15 86.3 181 33.7
Haze_04963 Corylus avellana HOM05D003556 ORTHO05D003404 3.5e-15 85.9 152 37.5
BcaC01g06767 Brassica carinata HOM05D003556 ORTHO05D003404 4.6e-15 85.5 178 32.6
C03p37950 Brassica napus HOM05D003556 ORTHO05D003404 4.6e-15 85.5 174 33.3
BolC3t16082H Brassica oleracea HOM05D003556 ORTHO05D003404 4.6e-15 85.5 178 32.6
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 5.9e-15 85.1 170 35.3
A03p31140 Brassica napus HOM05D003556 ORTHO05D003404 1.0e-14 84.3 184 32.6
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 1.0e-14 84.3 152 39.5
TWI14G0192 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 1.0e-14 84.3 169 31.4
BraA03t12291Z Brassica rapa HOM05D003556 ORTHO05D003404 1.7e-14 83.6 184 33.2
CARHR250460 Cardamine hirsuta HOM05D003556 ORTHO05D003404 1.7e-14 83.6 154 33.8
Cfa005889 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.7e-14 83.6 124 40.3
Thhalv10029000m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 1.7e-14 83.6 154 33.8
BcaC03g16110 Brassica carinata HOM05D003556 ORTHO05D003404 2.3e-14 83.2 173 32.9
Sp6g02140 Schrenkiella parvula HOM05D003556 ORTHO05D003404 2.3e-14 83.2 173 32.9
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 3.0e-14 82.8 172 35.5
A06p00030 Brassica napus HOM05D003556 ORTHO05D003404 3.0e-14 82.8 176 33.5
BraA06t23219Z Brassica rapa HOM05D003556 ORTHO05D003404 3.0e-14 82.8 176 33.5
A02p24580 Brassica napus HOM05D003556 ORTHO05D003404 3.9e-14 82.4 174 32.8
C02p38810 Brassica napus HOM05D003556 ORTHO05D003404 3.9e-14 82.4 174 32.8
BolC2t09897H Brassica oleracea HOM05D003556 ORTHO05D003404 3.9e-14 82.4 174 32.8
BraA02t07448Z Brassica rapa HOM05D003556 ORTHO05D003404 3.9e-14 82.4 174 32.8
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 3.9e-14 82.4 184 31.0
BcaC04g24050 Brassica carinata HOM05D003556 ORTHO05D003404 5.0e-14 82.0 174 32.8
A09p01710 Brassica napus HOM05D003556 ORTHO05D003404 5.0e-14 82.0 174 32.8
C09p01780 Brassica napus HOM05D003556 ORTHO05D003404 5.0e-14 82.0 174 32.8
BolC9t53113H Brassica oleracea HOM05D003556 ORTHO05D003404 5.0e-14 82.0 174 32.8
BraA09t35826Z Brassica rapa HOM05D003556 ORTHO05D003404 5.0e-14 82.0 174 32.8
Dinv33067 Davidia involucrata HOM05D003556 ORTHO05D003404 5.0e-14 82.0 133 36.8
BcaB01g02062 Brassica carinata HOM05D003556 ORTHO05D003404 6.6e-14 81.6 177 32.2
BcaB05g23608 Brassica carinata HOM05D003556 ORTHO05D003404 6.6e-14 81.6 174 32.2
Dinv19674 Davidia involucrata HOM05D003556 ORTHO05D003404 6.6e-14 81.6 147 36.7
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 8.6e-14 81.3 179 30.2
Carub.0006s3492 Capsella rubella HOM05D003556 ORTHO05D003404 8.6e-14 81.3 154 31.8
Sp1g41350 Schrenkiella parvula HOM05D003556 ORTHO05D003404 1.1e-13 80.9 176 33.0
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 1.1e-13 80.9 183 30.1
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 1.5e-13 80.5 173 36.4
CARHR045450 Cardamine hirsuta HOM05D003556 ORTHO05D003404 1.9e-13 80.1 181 33.1
Sed0000124 Sechium edule HOM05D003556 ORTHO05D003404 1.9e-13 80.1 168 32.7
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 2.5e-13 79.7 150 38.0
Sabra01G0098200 Salix brachista HOM05D003556 ORTHO05D003404 3.3e-13 79.3 169 33.1
TWI23G0284 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 3.3e-13 79.3 180 31.7
Aa31LG10G420 Aethionema arabicum HOM05D003556 ORTHO05D003404 4.3e-13 79.0 171 32.2
AL6G50890 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 4.3e-13 79.0 154 31.8
BcaC08g44217 Brassica carinata HOM05D003556 ORTHO05D003404 4.3e-13 79.0 182 34.6
C06p16220 Brassica napus HOM05D003556 ORTHO05D003404 4.3e-13 79.0 182 34.6
BolC6t36819H Brassica oleracea HOM05D003556 ORTHO05D003404 4.3e-13 79.0 182 34.6
Carub.0001s4433 Capsella rubella HOM05D003556 ORTHO05D003404 4.3e-13 79.0 152 32.9
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 4.3e-13 79.0 148 36.5
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 5.6e-13 78.6 170 33.5
Thhalv10012280m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 7.3e-13 78.2 181 30.4
THA.LOC104825958 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 7.3e-13 78.2 177 31.6
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 9.5e-13 77.8 169 30.8
A08p00310 Brassica napus HOM05D003556 ORTHO05D003404 1.2e-12 77.4 176 31.2
BraA08t32089Z Brassica rapa HOM05D003556 ORTHO05D003404 1.2e-12 77.4 176 31.2
BolC3t21618H Brassica oleracea HOM05D003556 ORTHO05D003404 1.6e-12 77.0 176 30.7
Cpa.g.sc151.17 Carica papaya HOM05D003556 ORTHO05D003404 1.6e-12 77.0 155 34.2
ClCG03G017200 Citrullus lanatus HOM05D003556 ORTHO05D003404 1.6e-12 77.0 157 31.2
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 1.6e-12 77.0 181 34.3
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 2.8e-12 76.3 136 33.8
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 2.8e-12 76.3 139 34.5
BcaB07g33190 Brassica carinata HOM05D003556 ORTHO05D003404 3.6e-12 75.9 162 32.1
C03p93200 Brassica napus HOM05D003556 ORTHO05D003404 3.6e-12 75.9 176 30.7
BraA05t20629Z Brassica rapa HOM05D003556 ORTHO05D003404 3.6e-12 75.9 181 32.0
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 3.6e-12 75.9 179 30.7
A05p17320 Brassica napus HOM05D003556 ORTHO05D003404 4.7e-12 75.5 181 32.0
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 6.2e-12 75.1 168 34.5
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 6.2e-12 75.1 186 30.6
AT1G55770 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 8.0e-12 74.7 181 30.9
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 8.0e-12 74.7 149 35.6
AT4G02250 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 1.1e-11 74.3 141 31.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.1e-11 74.3 158 33.5
BcaB02g10800 Brassica carinata HOM05D003556 ORTHO05D003404 2.3e-11 73.2 181 30.4
THA.LOC104822713 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 4.0e-11 72.4 178 30.9
CANSAT25G0193 Cannabis sativa HOM05D003556 ORTHO05D003404 8.9e-11 71.2 174 31.0
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 8.9e-11 71.2 149 33.6
Sed0028173 Sechium edule HOM05D003556 ORTHO05D003404 8.9e-11 71.2 176 32.4
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 1.5e-10 70.5 179 30.2
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 3.4e-10 69.3 165 31.5
Sed0018956 Sechium edule HOM05D003556 ORTHO05D003404 3.4e-10 69.3 174 31.6
TWI12G1373 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 5.8e-10 68.6 187 30.5
TWI60G0816 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 5.8e-10 68.6 187 30.5
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 9.8e-10 67.8 166 32.5
Gohir.A08G042100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 1.7e-09 67.0 152 28.9
Gorai.004G052000 Gossypium raimondii HOM05D003556 ORTHO05D003404 1.7e-09 67.0 141 29.1
Gohir.D08G051900 Gossypium hirsutum HOM05D003556 ORTHO05D003404 2.2e-09 66.6 152 28.3
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 2.2e-09 66.6 135 34.8
COL.COLO4_23319 Corchorus olitorius HOM05D003556 ORTHO05D003404 2.9e-09 66.2 168 28.0
Haze_04119 Corylus avellana HOM05D014310 ORTHO05D003404 6.4e-09 65.1 155 35.5
Lj2A1197T77 Lonicera japonica HOM05D003556 ORTHO05D003404 8.3e-09 64.7 156 32.7
SGA_v2.0_scaffold1G00355 Striga asiatica HOM05D021624 ORTHO05D015999 1.1e-08 64.3 145 31.0
Cfa014665 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.9e-08 63.5 176 34.7
unitig_22.g5237 Utricularia gibba HOM05D021624 ORTHO05D015999 2.4e-08 63.2 130 32.3
PSO782G0985 Papaver somniferum HOM05D001445 ORTHO05D001261 4.1e-08 62.4 184 27.7
Nn1g00650 Nelumbo nucifera HOM05D001445 ORTHO05D001261 5.4e-08 62.0 139 30.2
HPP92_004349 Vanilla planifolia HOM05D014663 ORTHO05D001261 5.4e-08 62.0 183 30.1
HPP92_004352 Vanilla planifolia HOM05D014663 ORTHO05D001261 5.4e-08 62.0 183 30.1
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 7.0e-08 61.6 136 30.9
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.2e-07 60.8 175 32.0
Migut.D00139 Erythranthe guttata HOM05D021624 ORTHO05D015999 1.2e-07 60.8 135 30.4
Manes.08G115800 Manihot esculenta HOM05D001445 ORTHO05D003404 1.2e-07 60.8 134 32.1
Ciclev10002648m.g Citrus clementina HOM05D003556 ORTHO05D003404 1.6e-07 60.5 177 28.8
MD06G1041900 Malus domestica HOM05D001445 ORTHO05D001261 2.7e-07 59.7 170 26.5
ATR1149G037 Amborella trichopoda HOM05D003556 ORTHO05D003404 4.6e-07 58.9 167 31.1
Manes.08G115700 Manihot esculenta HOM05D001445 ORTHO05D003404 4.6e-07 58.9 134 30.6
CANSAT54G0162 Cannabis sativa HOM05D003556 ORTHO05D003404 7.8e-07 58.2 131 30.5
HPP92_014651 Vanilla planifolia HOM05D001445 ORTHO05D001261 1.0e-06 57.8 174 27.0
Cfa006651 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.3e-06 57.4 178 32.0
CiPaw.07G023500 Carya illinoinensis HOM05D003556 ORTHO05D003404 1.7e-06 57.0 136 32.4
Eucgr.K03504 Eucalyptus grandis HOM05D003556 ORTHO05D003404 3.0e-06 56.2 142 32.4
Duzib084G0732 Durio zibethinus HOM05D001445 ORTHO05D001261 5.0e-06 55.5 122 29.5
MSTRG.18138 Avicennia marina HOM05D021624 ORTHO05D015999 8.6e-06 54.7 164 31.1


User provided reference genes

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