Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 0.0e+00 1092.0 545 100.0
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 1.5e-247 859.4 497 87.7
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.8e-240 835.9 496 85.5
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 9.0e-232 807.0 506 81.8
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 7.4e-226 787.3 457 86.0
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 3.4e-223 778.5 484 81.2
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 1.6e-217 759.6 479 80.0
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 5.8e-215 751.1 484 76.9
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.0e-214 750.4 474 77.6
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 1.7e-214 749.6 484 76.7
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 6.5e-214 747.7 473 77.4
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 6.5e-214 747.7 504 75.6
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 1.1e-213 746.9 508 75.8
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.9e-213 746.1 501 75.0
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 3.2e-213 745.3 500 74.6
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 7.1e-213 744.2 474 79.1
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.6e-212 743.0 495 74.9
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 1.6e-212 743.0 473 77.2
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 4.6e-212 741.5 490 77.8
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 1.8e-211 739.6 484 76.9
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 8.7e-211 737.3 474 77.0
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 8.7e-211 737.3 475 76.8
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.1e-210 736.9 470 78.5
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 1.9e-210 736.1 474 77.4
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 4.3e-210 734.9 484 76.2
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 2.2e-209 732.6 477 77.6
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 3.7e-209 731.9 473 77.2
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 1.4e-208 729.9 459 78.9
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 5.3e-208 728.0 464 77.8
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 5.3e-208 728.0 482 75.7
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 2.6e-207 725.7 473 77.0
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 3.4e-207 725.3 495 75.2
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 5.9e-207 724.5 456 78.7
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 1.7e-206 723.0 481 76.3
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 2.2e-206 722.6 469 77.0
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 5.0e-206 721.5 508 71.7
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 8.5e-206 720.7 459 79.1
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.1e-205 720.3 471 76.0
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 1.9e-205 719.5 477 76.3
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.5e-205 719.2 459 79.1
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 5.5e-205 718.0 479 76.0
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 7.2e-205 717.6 503 72.6
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 7.2e-205 717.6 455 78.5
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 9.3e-205 717.2 489 75.1
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.6e-204 716.5 468 77.6
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 2.1e-204 716.1 485 75.3
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 4.6e-204 714.9 473 76.3
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 6.1e-204 714.5 448 79.5
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 1.3e-203 713.4 551 68.4
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 3.0e-203 712.2 447 80.3
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 3.0e-203 712.2 499 73.1
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 6.7e-203 711.1 470 75.3
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 8.7e-203 710.7 487 73.7
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 8.7e-203 710.7 434 80.6
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 8.7e-203 710.7 470 76.2
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.1e-202 710.3 470 76.4
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.5e-202 709.9 475 73.7
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 2.5e-202 709.1 458 79.3
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 3.3e-202 708.8 458 77.9
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 9.7e-202 707.2 425 81.9
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 1.7e-201 706.4 475 74.1
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 2.8e-201 705.7 489 74.2
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.1e-200 703.7 461 77.0
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 1.4e-200 703.4 475 73.1
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 1.2e-199 700.3 493 74.4
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 2.6e-199 699.1 478 73.2
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 2.6e-199 699.1 499 71.3
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 3.4e-199 698.7 477 74.2
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 7.7e-199 697.6 540 68.5
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 1.3e-198 696.8 477 75.3
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 1.7e-198 696.4 457 76.1
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 2.2e-198 696.0 558 65.4
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 2.9e-198 695.7 480 72.7
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 1.1e-197 693.7 524 68.3
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 1.1e-197 693.7 472 73.3
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 4.2e-197 691.8 421 81.2
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 7.2e-197 691.0 457 75.5
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.7e-196 688.3 459 76.0
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 1.4e-195 686.8 478 72.6
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.4e-195 686.8 475 72.0
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 2.3e-195 686.0 493 71.6
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.0e-195 685.6 460 75.9
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 3.9e-195 685.3 462 74.2
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 3.9e-195 685.3 429 77.6
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 1.1e-194 683.7 522 68.8
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 3.1e-192 675.6 507 67.3
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 6.9e-192 674.5 475 72.6
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 9.1e-192 674.1 471 70.1
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.5e-191 673.3 495 69.1
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.1e-189 667.2 485 71.3
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 3.2e-189 665.6 484 70.7
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 9.4e-189 664.1 499 66.9
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 3.6e-188 662.1 495 72.3
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 2.3e-187 659.4 483 70.6
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 5.2e-187 658.3 460 70.2
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 5.2e-187 658.3 491 68.4
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 5.2e-187 658.3 399 79.7
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 8.8e-187 657.5 489 67.3
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.1e-186 657.1 381 82.7
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 1.5e-186 656.8 511 68.3
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 1.5e-186 656.8 455 70.3
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 5.7e-186 654.8 486 67.7
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 1.1e-184 650.6 501 65.3
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 3.1e-184 649.0 500 65.8
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 7.0e-184 647.9 475 68.2
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 1.6e-183 646.7 460 70.2
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 1.6e-183 646.7 509 68.6
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 2.0e-183 646.4 466 69.1
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 3.5e-183 645.6 457 69.4
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 7.7e-183 644.4 378 84.1
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 7.7e-183 644.4 501 64.7
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 1.1e-181 640.6 469 68.0
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 4.2e-181 638.6 402 77.1
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 1.6e-180 636.7 425 76.0
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 1.0e-179 634.0 464 67.9
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.0e-179 632.1 429 75.5
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 8.8e-179 630.9 461 68.5
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 2.0e-178 629.8 461 68.8
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 9.7e-178 627.5 496 65.9
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 2.8e-177 625.9 464 67.9
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 5.3e-176 621.7 464 67.9
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 6.5e-174 614.8 401 75.6
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 6.5e-174 614.8 464 66.6
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 8.5e-174 614.4 500 65.8
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 1.8e-171 606.7 463 67.4
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.0e-158 564.3 396 68.4
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 4.3e-157 558.9 457 65.6
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 5.6e-157 558.5 415 67.7
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 1.4e-155 553.9 487 59.1
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 8.9e-155 551.2 493 59.6
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 2.9e-153 546.2 330 80.9
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.1e-149 534.3 441 60.1
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 9.8e-146 521.2 506 57.3
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.7e-145 520.4 466 57.5
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 9.5e-141 504.6 524 55.2
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 1.4e-139 500.7 498 55.2
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.1e-139 499.6 310 79.4
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 7.5e-138 495.0 480 55.2
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.2e-137 493.4 448 57.1
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.1e-136 491.1 441 59.6
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 7.8e-135 485.0 411 63.3
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 2.3e-134 483.4 479 59.3
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 4.3e-133 479.2 504 53.0
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.9e-122 441.4 268 81.0
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 3.2e-120 436.4 323 68.4
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 2.7e-119 433.3 319 70.8
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.2e-114 417.9 491 48.9
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 5.3e-107 392.5 267 71.9
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 5.5e-104 382.5 280 69.3
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 2.7e-103 380.2 272 69.1
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 1.2e-95 354.8 288 66.0
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 1.8e-75 287.7 194 72.7
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-73 280.8 211 63.0
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 2.9e-73 280.4 235 64.7
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 1.2e-71 275.0 151 88.1
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 5.5e-64 249.6 163 74.8
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.3e-57 228.4 235 54.9
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 2.2e-57 227.6 163 67.5
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 1.8e-54 218.0 270 44.8
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 6.3e-52 209.5 153 68.0
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 7.7e-50 202.6 140 70.0
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 3.8e-49 200.3 133 72.2
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 6.6e-49 199.5 484 28.7
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 5.5e-48 196.4 105 89.5
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 4.7e-47 193.4 132 71.2
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 4.9e-44 183.3 153 63.4
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 1.8e-43 181.4 123 71.5
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 2.5e-40 171.0 129 69.0
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.7e-36 158.3 492 26.6
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 3.0e-33 147.5 112 71.4
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 8.9e-30 136.0 98 69.4
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 5.8e-29 133.3 78 80.8
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 1.2e-26 125.6 132 53.8
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 3.9e-25 120.6 65 87.7
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 3.6e-23 114.0 68 80.9
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 2.0e-21 108.2 63 76.2
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 2.9e-20 104.4 108 54.6
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 1.9e-19 101.7 53 86.8
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 6.2e-15 86.7 126 41.3
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 1.2e-10 72.4 43 79.1
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 8.7e-09 66.2 36 80.6
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 8.1e-07 59.7 32 90.6
Lsat_1_v5_gn_4_144501 Lactuca sativa HOM05D000361 ORTHO05D005006 2.4e-06 58.2 32 87.5
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 5.3e-06 57.0 31 74.2


User provided reference genes

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