Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.0e-38 162.9 80 100.0
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 1.0e-35 152.9 80 96.2
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 5.1e-35 150.6 79 94.9
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 1.8e-32 142.1 79 88.6
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.2e-31 139.4 79 88.6
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 7.7e-31 136.7 79 84.8
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 7.7e-31 136.7 79 84.8
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.0e-30 136.3 79 84.8
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 3.8e-30 134.4 79 83.5
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 5.0e-30 134.0 79 83.5
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 9.4e-29 129.8 79 81.0
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 9.4e-29 129.8 79 81.0
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 4.6e-28 127.5 79 79.7
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 3.0e-27 124.8 79 78.5
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 3.9e-27 124.4 79 77.2
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 5.1e-27 124.0 79 75.9
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.5e-26 122.5 79 72.2
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.5e-26 122.5 79 72.2
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 2.5e-26 121.7 79 75.9
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 4.3e-26 120.9 79 72.2
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.7e-25 119.0 79 73.4
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.8e-25 118.2 79 74.7
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 3.7e-25 117.9 79 74.7
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 3.7e-25 117.9 79 74.7
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 3.7e-25 117.9 79 70.9
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 8.2e-25 116.7 79 73.4
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.1e-24 116.3 79 70.9
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.4e-24 115.9 78 71.8
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.4e-24 115.9 79 72.2
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.8e-24 115.5 79 72.2
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.8e-24 115.5 79 70.9
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.8e-24 115.5 79 69.6
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 3.1e-24 114.8 79 69.6
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 4.1e-24 114.4 79 72.2
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 4.1e-24 114.4 77 72.7
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 4.1e-24 114.4 79 67.1
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 5.3e-24 114.0 79 72.2
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 6.9e-24 113.6 79 72.2
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 9.1e-24 113.2 77 68.8
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 9.1e-24 113.2 79 69.6
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 1.2e-23 112.8 74 73.0
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.2e-23 112.8 79 70.9
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.2e-23 112.8 79 70.9
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.5e-23 112.5 79 69.6
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 1.5e-23 112.5 79 69.6
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.5e-23 112.5 79 68.4
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.0e-23 112.1 79 70.9
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 2.0e-23 112.1 79 69.6
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 5.9e-23 110.5 79 67.1
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.9e-23 110.5 79 69.6
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 7.7e-23 110.2 77 71.4
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-22 109.4 79 67.1
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 1.7e-22 109.0 79 67.1
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 1.7e-22 109.0 77 67.5
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 1.7e-22 109.0 79 65.8
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.2e-22 108.6 92 64.1
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.2e-22 108.6 79 67.1
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 2.2e-22 108.6 79 67.1
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 3.8e-22 107.8 79 67.1
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 3.8e-22 107.8 79 67.1
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 3.8e-22 107.8 77 67.5
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.8e-22 107.8 79 65.8
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 5.0e-22 107.5 79 65.8
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 5.0e-22 107.5 79 65.8
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 5.0e-22 107.5 79 65.8
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 5.0e-22 107.5 79 67.1
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 5.0e-22 107.5 79 64.6
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 5.0e-22 107.5 79 65.8
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 5.0e-22 107.5 77 66.2
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 6.5e-22 107.1 79 65.8
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.1e-21 106.3 78 64.1
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 1.1e-21 106.3 79 64.6
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.4e-21 105.9 79 64.6
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 1.4e-21 105.9 79 67.1
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.9e-21 105.5 79 65.8
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.9e-21 105.5 79 63.3
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.9e-21 105.5 53 96.2
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.5e-21 105.1 79 63.3
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 3.2e-21 104.8 79 63.3
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 5.5e-21 104.0 79 63.3
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 7.2e-21 103.6 79 63.3
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 7.2e-21 103.6 79 63.3
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 1.2e-20 102.8 79 64.6
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.6e-20 102.4 79 62.0
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 2.1e-20 102.1 75 64.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 2.1e-20 102.1 75 64.0
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 2.7e-20 101.7 79 63.3
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 7.9e-20 100.1 79 62.0
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 1.8e-19 99.0 79 62.0
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 1.8e-19 99.0 79 58.2
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 2.3e-19 98.6 73 67.1
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 2.3e-19 98.6 78 66.7
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 3.0e-19 98.2 75 62.7
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 5.1e-19 97.4 79 57.0
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 5.1e-19 97.4 79 57.0
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 8.8e-19 96.7 75 60.0
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 8.8e-19 96.7 75 65.3
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 8.8e-19 96.7 79 62.0
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.1e-18 96.3 79 60.8
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.1e-18 96.3 79 63.3
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 2.0e-18 95.5 79 59.5
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 4.4e-18 94.4 102 52.9
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 5.7e-18 94.0 76 61.8
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 5.7e-18 94.0 75 62.7
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 5.7e-18 94.0 73 61.6
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 2.8e-17 91.7 74 60.8
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 2.8e-17 91.7 79 58.2
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 4.8e-17 90.9 113 48.7
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 4.8e-17 90.9 113 48.7
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 4.8e-17 90.9 73 61.6
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.4e-16 89.4 79 54.4
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.4e-16 89.4 73 60.3
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 7.0e-16 87.0 77 51.9
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.2e-15 86.3 74 54.1
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 2.0e-15 85.5 75 52.0
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 4.5e-15 84.3 65 61.5
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 4.5e-15 84.3 65 61.5
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 4.5e-15 84.3 65 61.5
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 4.5e-15 84.3 70 55.7
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 7.7e-15 83.6 62 62.9
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.0e-14 83.2 70 55.7
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 2.2e-14 82.0 64 65.6
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 2.2e-14 82.0 59 67.8
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 2.9e-14 81.6 65 61.5
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 3.8e-14 81.3 76 50.0
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 1.9e-13 79.0 65 58.5
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 3.2e-13 78.2 63 60.3
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 7.2e-13 77.0 75 49.3
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 7.2e-13 77.0 90 44.4
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 1.6e-12 75.9 62 59.7
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.7e-12 75.1 87 44.8
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 2.3e-11 72.0 57 59.6
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 2.6e-10 68.6 43 74.4
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.3e-10 68.2 43 79.1
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.2e-09 65.5 56 58.9
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.4e-08 62.0 42 76.2
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 1.6e-07 59.3 38 68.4
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 2.7e-07 58.5 60 50.0
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 3.5e-07 58.2 38 73.7
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 3.5e-07 58.2 38 73.7
arahy.Tifrunner.gnm1.ann1.NZ4Q1A Arachis hypogaea HOM05D000129 ORTHO05D014893 3.5e-07 58.2 38 68.4
arahy.Tifrunner.gnm1.ann1.583R3C Arachis hypogaea HOM05D004238 ORTHO05D014893 7.7e-07 57.0 37 70.3
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 7.7e-07 57.0 38 63.2
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 7.7e-07 57.0 74 37.8
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 1.0e-06 56.6 37 70.3
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 2.9e-06 55.1 38 68.4
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 2.9e-06 55.1 36 69.4
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 2.9e-06 55.1 36 69.4
arahy.Tifrunner.gnm1.ann1.4RSR2L Arachis hypogaea HOM05D004238 ORTHO05D014893 3.8e-06 54.7 38 65.8
arahy.Tifrunner.gnm1.ann1.DRRV3Z Arachis hypogaea HOM05D000129 ORTHO05D014893 3.8e-06 54.7 38 65.8
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 3.8e-06 54.7 38 68.4
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 6.5e-06 53.9 48 56.2


User provided reference genes

Program Settings