Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 2.3e-82 308.9 162 100.0
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 6.3e-56 221.1 162 75.9
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 5.0e-53 211.5 162 72.8
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 5.0e-53 211.5 162 72.8
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 2.7e-51 205.7 163 72.4
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 1.6e-48 196.4 162 68.5
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 2.2e-48 196.1 162 67.9
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.2e-48 196.1 162 68.5
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 3.7e-48 195.3 162 67.9
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 4.8e-48 194.9 162 67.9
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.8e-47 193.0 162 67.3
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 4.1e-47 191.8 163 66.3
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 4.1e-47 191.8 162 65.4
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 9.0e-47 190.7 160 66.2
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 1.5e-46 189.9 163 65.6
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 1.5e-46 189.9 162 64.8
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 1.5e-46 189.9 162 65.4
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 2.0e-46 189.5 162 64.8
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 4.5e-46 188.3 163 65.0
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 7.7e-46 187.6 163 65.0
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 7.7e-46 187.6 162 64.2
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 7.7e-46 187.6 166 67.5
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 1.0e-45 187.2 162 64.2
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 1.0e-45 187.2 163 65.0
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 1.3e-45 186.8 163 65.0
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.3e-45 186.8 163 65.6
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 1.7e-45 186.4 163 65.6
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 2.2e-45 186.0 162 64.8
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 2.2e-45 186.0 163 64.4
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 2.2e-45 186.0 163 64.4
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 2.2e-45 186.0 163 64.4
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 2.2e-45 186.0 163 64.4
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 2.2e-45 186.0 162 63.6
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.2e-45 186.0 163 66.3
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.2e-45 186.0 163 66.3
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 2.9e-45 185.7 163 66.3
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 2.9e-45 185.7 162 63.0
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.9e-45 185.7 163 65.6
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 2.9e-45 185.7 162 62.3
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 3.8e-45 185.3 163 65.6
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 3.8e-45 185.3 163 65.0
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 6.5e-45 184.5 163 64.4
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 6.5e-45 184.5 162 63.6
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 8.5e-45 184.1 162 63.0
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.5e-45 184.1 163 65.0
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 1.1e-44 183.7 165 65.5
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 1.1e-44 183.7 162 62.3
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.1e-44 183.7 163 63.2
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 1.4e-44 183.3 162 63.6
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 1.4e-44 183.3 163 65.0
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.4e-44 183.3 161 62.1
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 1.4e-44 183.3 161 62.1
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 1.9e-44 183.0 162 64.8
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 3.2e-44 182.2 162 64.8
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 3.2e-44 182.2 164 64.0
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 4.2e-44 181.8 163 65.0
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 7.2e-44 181.0 163 63.8
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 7.2e-44 181.0 163 63.8
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 9.4e-44 180.6 162 64.8
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.2e-43 180.3 161 61.5
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.2e-43 180.3 163 65.0
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 1.6e-43 179.9 164 63.4
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 1.6e-43 179.9 164 63.4
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 1.6e-43 179.9 164 63.4
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 1.6e-43 179.9 164 63.4
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 1.6e-43 179.9 164 63.4
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.6e-43 179.9 163 63.8
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.6e-43 179.9 161 61.5
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 2.1e-43 179.5 164 63.4
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 2.1e-43 179.5 161 65.2
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.1e-43 179.5 163 63.2
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 2.7e-43 179.1 161 61.5
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.7e-43 179.1 164 63.4
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.7e-43 179.1 164 63.4
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.7e-43 179.1 165 63.6
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 3.6e-43 178.7 163 62.0
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 4.6e-43 178.3 163 63.2
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 6.1e-43 177.9 162 59.3
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 6.1e-43 177.9 182 58.2
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 7.9e-43 177.6 163 60.7
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 1.0e-42 177.2 162 61.7
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 1.0e-42 177.2 165 63.0
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 1.4e-42 176.8 163 63.2
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 2.3e-42 176.0 164 61.6
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 3.0e-42 175.6 162 63.0
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.9e-42 175.3 163 62.6
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 5.1e-42 174.9 108 84.3
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 5.1e-42 174.9 162 61.1
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.1e-41 173.7 163 62.0
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 1.1e-41 173.7 161 60.2
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.1e-41 173.7 162 59.9
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 1.5e-41 173.3 165 60.6
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.5e-41 173.3 161 60.2
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.5e-41 173.3 161 62.7
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 2.0e-41 172.9 163 62.0
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.0e-41 172.9 163 62.6
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 2.0e-41 172.9 161 62.7
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 2.0e-41 172.9 163 61.3
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 3.3e-41 172.2 164 60.4
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 3.3e-41 172.2 163 60.7
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 4.3e-41 171.8 163 61.3
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.7e-41 171.4 161 61.5
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 5.7e-41 171.4 161 59.6
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 7.4e-41 171.0 161 59.6
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 7.4e-41 171.0 162 59.9
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 7.4e-41 171.0 96 90.6
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 9.7e-41 170.6 161 61.5
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 9.7e-41 170.6 161 61.5
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 9.7e-41 170.6 161 59.6
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.3e-40 170.2 161 61.5
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.2e-40 169.5 156 60.3
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 2.8e-40 169.1 161 60.9
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 3.7e-40 168.7 155 60.6
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 4.8e-40 168.3 162 58.6
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 6.3e-40 167.9 104 82.7
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 6.3e-40 167.9 158 60.1
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 1.1e-39 167.2 104 83.7
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 1.1e-39 167.2 169 59.8
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 1.8e-39 166.4 104 82.7
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 5.3e-39 164.9 161 60.2
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 6.9e-39 164.5 163 60.7
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 9.1e-39 164.1 95 85.3
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 1.2e-38 163.7 161 59.6
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.2e-38 163.7 164 57.3
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.5e-38 163.3 95 87.4
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.6e-38 162.5 163 58.9
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 5.9e-38 161.4 92 87.0
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 7.7e-38 161.0 162 56.8
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.1e-36 157.1 104 77.9
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 1.9e-36 156.4 96 84.4
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.2e-36 155.6 102 77.5
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.2e-35 153.7 111 73.0
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 4.7e-35 151.8 116 68.1
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 2.2e-32 142.9 97 76.3
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 6.3e-32 141.4 78 93.6
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.4e-31 140.2 86 81.4
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 3.1e-31 139.0 77 93.5
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 1.3e-29 133.7 95 73.7
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 5.3e-23 111.7 90 63.3
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 3.8e-21 105.5 69 78.3
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 6.5e-21 104.8 101 59.4
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 1.6e-11 73.6 48 77.1
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.6e-09 66.2 99 41.4
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 2.2e-08 63.2 92 40.2
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 2.8e-08 62.8 78 44.9


User provided reference genes

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