Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1278g0080 Pisum sativum HOM05D001639 ORTHO05D004140 2.2e-73 278.9 141 100.0
Psat6g184800 Pisum sativum HOM05D001639 ORTHO05D004140 3.9e-62 241.5 136 91.2
TPR.G1831 Trifolium pratense HOM05D001639 ORTHO05D004140 3.9e-62 241.5 136 91.2
Medtr1g095780 Medicago truncatula HOM05D001639 ORTHO05D004140 1.5e-61 239.6 132 92.4
VMungo0720G0568 Vigna mungo HOM05D001639 ORTHO05D004140 2.1e-60 235.7 136 88.2
Ca_10588_v3 Cicer arietinum L. HOM05D001639 ORTHO05D004140 2.8e-60 235.3 136 88.2
Glyma.10G213200 Glycine max HOM05D001639 ORTHO05D004140 6.2e-60 234.2 136 87.5
Glyma.20G177800 Glycine max HOM05D001639 ORTHO05D004140 6.2e-60 234.2 136 87.5
Lj5g0017893 Lotus japonicus HOM05D001639 ORTHO05D004140 6.2e-60 234.2 136 87.5
arahy.Tifrunner.gnm1.ann1.66TP8S Arachis hypogaea HOM05D001639 ORTHO05D004140 8.1e-60 233.8 136 88.2
arahy.Tifrunner.gnm1.ann1.ME3VYR Arachis hypogaea HOM05D001639 ORTHO05D004140 8.1e-60 233.8 136 88.2
Manes.10G043100 Manihot esculenta HOM05D001639 ORTHO05D004140 1.5e-58 229.6 136 86.0
Lalb_Chr02g0141921 Lupinus albus HOM05D001639 ORTHO05D004140 2.0e-58 229.2 136 86.8
Phvul.007G092200 Phaseolus vulgaris HOM05D001639 ORTHO05D004140 2.0e-58 229.2 132 87.9
Potri.008G043700 Populus trichocarpa HOM05D001639 ORTHO05D004140 1.3e-57 226.5 138 83.3
Sabra08G0030200 Salix brachista HOM05D001639 ORTHO05D004140 2.9e-57 225.3 138 82.6
Cc09_g02780 Coffea canephora HOM05D001639 ORTHO05D004140 4.9e-57 224.6 138 81.9
Sed0012976 Sechium edule HOM05D001639 ORTHO05D004140 4.9e-57 224.6 138 83.3
MELO3C012444.2 Cucumis melo HOM05D001639 ORTHO05D004140 6.4e-57 224.2 136 83.8
CsaV3_5G036460 Cucumis sativus L. HOM05D001639 ORTHO05D004140 6.4e-57 224.2 136 83.8
Potri.010G217900 Populus trichocarpa HOM05D001639 ORTHO05D004140 6.4e-57 224.2 136 83.1
Sabra10G0168600 Salix brachista HOM05D001639 ORTHO05D004140 8.4e-57 223.8 132 84.8
CSS0047322 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D004140 2.4e-56 222.2 138 81.2
Ciclev10030708m.g Citrus clementina HOM05D001639 ORTHO05D004140 2.4e-56 222.2 138 81.2
Cfa001598 Carpinus fangiana HOM05D001639 ORTHO05D004140 3.2e-56 221.9 136 82.4
Hma1.2p1_0453F.1_g156050 Hydrangea macrophylla HOM05D001639 ORTHO05D004140 4.2e-56 221.5 136 82.4
Prupe.2G217800 Prunus persica HOM05D001639 ORTHO05D004140 7.1e-56 220.7 138 81.9
Dinv11803 Davidia involucrata HOM05D001639 ORTHO05D004140 9.3e-56 220.3 138 81.2
CiPaw.02G176300 Carya illinoinensis HOM05D001639 ORTHO05D004140 1.2e-55 219.9 138 81.2
MD01G1130600 Malus domestica HOM05D001639 ORTHO05D004140 1.2e-55 219.9 138 81.2
QL08p056763 Quercus lobata HOM05D001639 ORTHO05D004140 1.2e-55 219.9 138 80.4
unitig_37.g12289 Utricularia gibba HOM05D001639 ORTHO05D004140 1.2e-55 219.9 138 80.4
Lalb_Chr06g0162161 Lupinus albus HOM05D001639 ORTHO05D004140 2.7e-55 218.8 132 85.6
RcHm_v2.0_Chr1g0364061 Rosa chinensis HOM05D001639 ORTHO05D004140 2.7e-55 218.8 138 80.4
Solyc04g050040.3 Solanum lycopersicum HOM05D001639 ORTHO05D004140 2.7e-55 218.8 138 79.0
Sopen04g020690 Solanum pennellii HOM05D001639 ORTHO05D004140 2.7e-55 218.8 138 79.0
Dinv31349 Davidia involucrata HOM05D001639 ORTHO05D004140 4.6e-55 218.0 138 80.4
FvH4_7g20100 Fragaria vesca HOM05D001639 ORTHO05D004140 6.0e-55 217.6 132 83.3
Thecc.10G068700 Theobroma cacao HOM05D001639 ORTHO05D004140 6.0e-55 217.6 139 81.3
Migut.F02030 Erythranthe guttata HOM05D001639 ORTHO05D004140 7.9e-55 217.2 138 81.9
MD07G1178700 Malus domestica HOM05D001639 ORTHO05D004140 7.9e-55 217.2 138 79.7
SalBow1G1021 Salvia bowleyana HOM05D001639 ORTHO05D004140 7.9e-55 217.2 138 79.0
SalBow1G3851 Salvia bowleyana HOM05D001639 ORTHO05D004140 7.9e-55 217.2 138 79.0
Manes.07G102700 Manihot esculenta HOM05D001639 ORTHO05D004140 1.3e-54 216.5 136 79.4
Peaxi162Scf00373g00710 Petunia axillaris HOM05D001639 ORTHO05D004140 1.3e-54 216.5 138 79.0
CAN.G925.4 Capsicum annuum HOM05D001639 ORTHO05D004140 1.8e-54 216.1 138 79.0
Duzib106G0065 Durio zibethinus HOM05D001639 ORTHO05D004140 1.8e-54 216.1 139 81.3
Duzib128G0828 Durio zibethinus HOM05D001639 ORTHO05D004140 2.3e-54 215.7 139 80.6
SGA_v2.0_scaffold329G48833 Striga asiatica HOM05D001639 ORTHO05D004140 3.0e-54 215.3 129 83.7
Atru.chr12.647 Acer truncatum HOM05D001639 ORTHO05D004140 3.9e-54 214.9 138 79.0
Atru.chr12.674 Acer truncatum HOM05D001639 ORTHO05D004140 3.9e-54 214.9 138 79.0
MSTRG.8167 Avicennia marina HOM05D001639 ORTHO05D004140 3.9e-54 214.9 132 81.1
Nitab4.5_0000061g0120 Nicotiana tabacum HOM05D001639 ORTHO05D004140 3.9e-54 214.9 138 78.3
Nitab4.5_0003116g0030 Nicotiana tabacum HOM05D001639 ORTHO05D004140 3.9e-54 214.9 138 78.3
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 3.9e-54 214.9 138 77.5
TWI38G1401 Tripterygium wilfordii HOM05D001639 ORTHO05D004140 3.9e-54 214.9 138 78.3
HanXRQChr07g0200411 Helianthus annuus HOM05D001639 ORTHO05D004140 5.1e-54 214.5 136 77.2
ClCG05G020850 Citrullus lanatus HOM05D001639 ORTHO05D004140 6.7e-54 214.2 127 85.0
FAN03G2481 Fragaria x ananassa HOM05D001639 ORTHO05D004140 6.7e-54 214.2 134 81.3
FAN01G0541 Fragaria x ananassa HOM05D001639 ORTHO05D004140 8.7e-54 213.8 129 83.7
FAN10G2085 Fragaria x ananassa HOM05D001639 ORTHO05D004140 8.7e-54 213.8 129 83.7
Aqoxy3G00782 Aquilegia oxysepala HOM05D001639 ORTHO05D004140 1.1e-53 213.4 136 79.4
Gohir.A01G133400 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.1e-53 213.4 139 80.6
Gohir.D01G117800 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.1e-53 213.4 139 80.6
Gorai.002G143300 Gossypium raimondii HOM05D001639 ORTHO05D004140 1.1e-53 213.4 139 80.6
HanXRQChr14g0440781 Helianthus annuus HOM05D001639 ORTHO05D004140 1.1e-53 213.4 136 77.2
Lalb_Chr19g0129511 Lupinus albus HOM05D001639 ORTHO05D004140 1.1e-53 213.4 136 78.7
Psat0s2855g0080 Pisum sativum HOM05D001639 ORTHO05D004140 1.1e-53 213.4 140 80.0
GSVIVG01016323001 Vitis vinifera HOM05D001639 ORTHO05D004140 1.1e-53 213.4 136 80.1
Actinidia13005 Actinidia chinensis HOM05D001639 ORTHO05D004140 1.9e-53 212.6 129 81.4
Nn2g13007 Nelumbo nucifera HOM05D001639 ORTHO05D004140 2.5e-53 212.2 136 77.9
vmacro04888 Vaccinium macrocarpon HOM05D001639 ORTHO05D004140 2.5e-53 212.2 136 76.5
PSO339G2101 Papaver somniferum HOM05D001639 ORTHO05D004140 3.3e-53 211.8 136 78.7
PSO384G0277 Papaver somniferum HOM05D001639 ORTHO05D004140 3.3e-53 211.8 136 78.7
CiPaw.01G276100 Carya illinoinensis HOM05D001639 ORTHO05D004140 4.3e-53 211.5 138 79.0
ECA238G1467 Erigeron canadensis HOM05D001639 ORTHO05D004140 4.3e-53 211.5 136 77.2
Cpa.g.sc60.50 Carica papaya HOM05D001639 ORTHO05D004140 9.6e-53 210.3 132 80.3
COL.COLO4_23728 Corchorus olitorius HOM05D001639 ORTHO05D004140 9.6e-53 210.3 130 83.1
Nn2g10677 Nelumbo nucifera HOM05D001639 ORTHO05D004140 1.6e-52 209.5 136 76.5
Lj2g0005885 Lotus japonicus HOM05D001639 ORTHO05D004140 3.6e-52 208.4 136 74.3
PGR142G2027 Punica granatum HOM05D001639 ORTHO05D004140 4.8e-52 208.0 136 75.7
Haze_16931 Corylus avellana HOM05D001639 ORTHO05D004140 6.2e-52 207.6 124 83.9
Lj1A922T71 Lonicera japonica HOM05D001639 ORTHO05D004140 6.2e-52 207.6 129 81.4
Lsat_1_v5_gn_2_114120 Lactuca sativa HOM05D001639 ORTHO05D004140 1.1e-51 206.8 136 75.7
Sc20g0002120 Simmondsia chinensis HOM05D001639 ORTHO05D004140 1.1e-51 206.8 136 78.7
Sed0023440 Sechium edule HOM05D001639 ORTHO05D004140 1.4e-51 206.5 136 75.0
Actinidia26626 Actinidia chinensis HOM05D001639 ORTHO05D004140 1.8e-51 206.1 138 76.1
Aa31sc26G20 Aethionema arabicum HOM05D001639 ORTHO05D004140 1.8e-51 206.1 136 75.0
Eucgr.G02805 Eucalyptus grandis HOM05D001639 ORTHO05D004140 2.4e-51 205.7 136 75.0
FAN06G3703 Fragaria x ananassa HOM05D001639 ORTHO05D004140 2.4e-51 205.7 124 83.9
AT2G35800 Arabidopsis thaliana HOM05D001639 ORTHO05D004140 3.1e-51 205.3 136 75.0
ATR1159G089 Amborella trichopoda HOM05D001639 ORTHO05D004140 6.9e-51 204.1 136 74.3
AL4G31920 Arabidopsis lyrata HOM05D001639 ORTHO05D004140 9.0e-51 203.8 136 74.3
BcaB01g03879 Brassica carinata HOM05D001639 ORTHO05D004140 9.0e-51 203.8 136 74.3
CARHR130060 Cardamine hirsuta HOM05D001639 ORTHO05D004140 9.0e-51 203.8 136 74.3
CDE08G1518 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 9.0e-51 203.8 136 73.5
TAR369G0055 Trochodendron aralioides HOM05D001639 ORTHO05D004140 9.0e-51 203.8 124 82.3
Carub.0004s1757 Capsella rubella HOM05D001639 ORTHO05D004140 1.2e-50 203.4 136 74.3
Sp4g18070 Schrenkiella parvula HOM05D001639 ORTHO05D004140 1.2e-50 203.4 136 74.3
BcaC01g05705 Brassica carinata HOM05D001639 ORTHO05D004140 1.5e-50 203.0 136 74.3
A03p19750 Brassica napus HOM05D001639 ORTHO05D004140 1.5e-50 203.0 136 74.3
C03p23000 Brassica napus HOM05D001639 ORTHO05D004140 1.5e-50 203.0 136 74.3
BolC3t14701H Brassica oleracea HOM05D001639 ORTHO05D004140 1.5e-50 203.0 136 74.3
BraA03t11227Z Brassica rapa HOM05D001639 ORTHO05D004140 1.5e-50 203.0 136 74.3
BcaB06g28874 Brassica carinata HOM05D001639 ORTHO05D004140 2.0e-50 202.6 136 74.3
BcaC02g07667 Brassica carinata HOM05D001639 ORTHO05D004140 2.0e-50 202.6 136 74.3
A04p27270 Brassica napus HOM05D001639 ORTHO05D004140 2.0e-50 202.6 136 74.3
C04p64790 Brassica napus HOM05D001639 ORTHO05D004140 2.0e-50 202.6 136 74.3
BolC4t27956H Brassica oleracea HOM05D001639 ORTHO05D004140 2.0e-50 202.6 136 74.3
BraA04t18225Z Brassica rapa HOM05D001639 ORTHO05D004140 2.0e-50 202.6 136 74.3
Hma1.2p1_0926F.1_g237560 Hydrangea macrophylla HOM05D001639 ORTHO05D004140 2.6e-50 202.2 138 73.2
Thhalv10016258m.g Eutrema salsugineum HOM05D001639 ORTHO05D004140 5.8e-50 201.1 136 72.8
Ah.10g033000 Amaranthus hybridus HOM05D001639 ORTHO05D004140 7.6e-50 200.7 136 75.7
CDE02G2748 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 7.6e-50 200.7 129 75.2
TAR633G2433 Trochodendron aralioides HOM05D001639 ORTHO05D004140 1.3e-49 199.9 124 80.6
Zm00001eb163150 Zea mays HOM05D001639 ORTHO05D004140 6.4e-49 197.6 136 72.8
Os11g0103700 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D004140 1.1e-48 196.8 132 72.7
EL10Ac2g03564 Beta vulgaris HOM05D001639 ORTHO05D004140 2.4e-48 195.7 129 77.5
Os12g0103000 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D004140 3.2e-48 195.3 132 72.0
CDE09G1351 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 1.2e-47 193.4 136 70.6
Hund22486 Selenicereus undatus HOM05D001639 ORTHO05D004140 2.1e-47 192.6 136 72.8
Zm00001eb094320 Zea mays HOM05D001639 ORTHO05D004140 3.5e-47 191.8 136 70.6
HPP92_019724 Vanilla planifolia HOM05D001639 ORTHO05D004140 2.3e-46 189.1 132 69.7
Gorai.010G203900 Gossypium raimondii HOM05D001639 ORTHO05D004140 1.1e-45 186.8 137 68.6
Gohir.A06G178800 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.9e-45 186.0 137 68.6
AUR62020778 Chenopodium quinoa HOM05D001639 ORTHO05D004140 2.5e-45 185.7 124 76.6
Gohir.D06G174300 Gossypium hirsutum HOM05D001639 ORTHO05D004140 5.6e-45 184.5 137 67.9
AUR62027922 Chenopodium quinoa HOM05D001639 ORTHO05D004140 7.4e-45 184.1 124 75.8
Gorai.010G204000 Gossypium raimondii HOM05D001639 ORTHO05D004140 7.4e-45 184.1 137 68.6
Gohir.D06G174400 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.6e-44 183.0 137 68.6
Lsat_1_v5_gn_5_52401 Lactuca sativa HOM05D001639 ORTHO05D004140 2.1e-44 182.6 129 71.3
Gohir.A06G178700 Gossypium hirsutum HOM05D001639 ORTHO05D004140 2.8e-44 182.2 137 67.2
unitig_736.g22511 Utricularia gibba HOM05D001639 ORTHO05D004140 2.6e-42 175.6 136 69.1
DCAR_006463 Daucus carota HOM05D001639 ORTHO05D004140 1.3e-41 173.3 103 82.5
Pp3c7_16780 Physcomitrium patens HOM05D001639 ORTHO05D004140 1.7e-41 172.9 136 61.8
Pp3c11_8770 Physcomitrium patens HOM05D001639 ORTHO05D004140 3.2e-40 168.7 136 60.3
SMO351G0172 Selaginella moellendorffii HOM05D001639 ORTHO05D004140 1.2e-39 166.8 136 58.1
SEGI_10205 Sequoiadendron giganteum HOM05D001639 ORTHO05D004140 2.1e-39 166.0 117 70.9
AagrBONN_evm.TU.Sc2ySwM_228.2641 Anthoceros agrestis HOM05D001639 ORTHO05D004140 7.9e-39 164.1 136 61.0
Lj8A96T35 Lonicera japonica HOM05D001639 ORTHO05D004140 2.5e-37 159.1 129 64.3
HPP92_006743 Vanilla planifolia HOM05D001639 ORTHO05D004140 5.7e-37 157.9 123 64.2
CBR_g34975 Chara braunii HOM05D001639 ORTHO05D004140 7.4e-37 157.5 137 57.7
Oeu041547.1 Olea europaea HOM05D001639 ORTHO05D004140 3.8e-33 145.2 81 87.7
CSS0005011 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D004140 6.1e-31 137.9 81 84.0
SalBow3G0579 Salvia bowleyana HOM05D001639 ORTHO05D004140 6.1e-31 137.9 136 54.4
HPP92_019720 Vanilla planifolia HOM05D001639 ORTHO05D004140 1.3e-30 136.7 97 67.0
SalBow3G3782 Salvia bowleyana HOM05D001639 ORTHO05D004140 1.8e-30 136.3 136 53.7
SGA_v2.0_scaffold122G33240 Striga asiatica HOM05D001639 ORTHO05D004140 1.4e-22 110.2 129 49.6
MCO02G013 Micromonas commoda HOM05D001639 ORTHO05D004140 1.8e-19 99.8 138 37.7
PRCOL_00007271 Prasinoderma coloniale HOM05D001639 ORTHO05D004140 1.4e-11 73.6 182 28.0
Lalb_Chr21g0305951 Lupinus albus HOM05D001639 ORTHO05D004140 1.9e-08 63.2 42 73.8
Aa31LG5G9460 Aethionema arabicum HOM05D001639 ORTHO05D004140 1.6e-07 60.1 136 33.1
arahy.Tifrunner.gnm1.ann1.5403MX Arachis hypogaea HOM05D001639 ORTHO05D004140 4.7e-07 58.5 47 63.8
arahy.Tifrunner.gnm1.ann1.Q3J83G Arachis hypogaea HOM05D001639 ORTHO05D004140 1.0e-06 57.4 44 63.6


User provided reference genes

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