Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 4.2e-171 604.7 339 100.0
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 4.4e-120 435.3 353 74.8
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 1.7e-116 423.3 338 76.9
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 6.6e-108 394.8 345 72.8
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 1.3e-82 310.8 343 59.8
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 2.1e-77 293.5 344 60.8
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 3.9e-76 289.3 344 60.8
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 6.5e-71 271.9 339 59.3
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 3.2e-70 269.6 354 57.3
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 6.3e-66 255.4 368 52.4
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 1.8e-52 210.7 358 51.1
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 4.8e-50 202.6 359 49.9
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 4.8e-50 202.6 389 39.3
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 1.4e-49 201.1 364 50.3
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 7.7e-48 195.3 391 36.6
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 3.8e-47 193.0 367 44.7
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 4.7e-45 186.0 360 47.2
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 3.0e-44 183.3 388 41.2
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 2.0e-43 180.6 388 40.2
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 4.1e-41 172.9 391 38.4
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 2.6e-40 170.2 401 35.4
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 1.0e-39 168.3 388 32.0
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 1.3e-39 167.9 366 38.3
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.3e-39 167.9 364 44.5
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 3.8e-39 166.4 372 38.4
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 6.5e-39 165.6 387 41.9
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 8.5e-39 165.2 380 36.1
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 1.1e-38 164.9 350 34.6
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 1.5e-38 164.5 389 36.2
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 2.5e-38 163.7 362 43.1
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 4.2e-38 162.9 186 53.2
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 4.2e-38 162.9 367 38.1
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 4.2e-38 162.9 367 38.1
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 5.5e-38 162.5 390 36.2
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 2.1e-37 160.6 359 44.3
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 4.7e-37 159.5 345 33.9
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 1.0e-36 158.3 393 41.0
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 1.4e-36 157.9 367 37.3
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 1.4e-36 157.9 382 40.3
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 1.8e-36 157.5 330 47.0
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 1.8e-36 157.5 411 37.2
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 3.0e-36 156.8 379 38.0
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 5.2e-36 156.0 374 38.8
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 2.0e-35 154.1 345 39.1
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 2.6e-35 153.7 386 33.4
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 9.7e-35 151.8 357 35.9
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.3e-34 151.4 386 33.4
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 1.7e-34 151.0 349 41.3
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 2.8e-34 150.2 377 37.4
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 3.7e-34 149.8 366 38.5
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 4.8e-34 149.4 410 29.8
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 1.8e-33 147.5 377 34.2
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 2.4e-33 147.1 312 33.0
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 2.4e-33 147.1 345 36.2
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 3.1e-33 146.7 350 36.9
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 3.1e-33 146.7 318 35.5
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 5.3e-33 146.0 368 37.8
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 5.3e-33 146.0 352 33.8
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 5.3e-33 146.0 352 33.8
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 1.2e-32 144.8 333 33.6
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.2e-32 144.8 385 33.0
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 1.6e-32 144.4 271 47.2
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 1.6e-32 144.4 369 37.7
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 3.5e-32 143.3 349 38.1
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 4.5e-32 142.9 364 38.2
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 5.9e-32 142.5 325 34.2
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 7.7e-32 142.1 277 36.1
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 1.3e-31 141.4 310 37.4
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 2.2e-31 140.6 379 36.4
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 2.2e-31 140.6 326 36.8
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.9e-31 140.2 393 38.2
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 5.0e-31 139.4 288 34.7
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 6.5e-31 139.0 320 39.7
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 6.5e-31 139.0 382 34.3
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 1.9e-30 137.5 376 35.6
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 2.5e-30 137.1 385 30.9
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 4.2e-30 136.3 355 39.2
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 7.2e-30 135.6 345 41.4
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 9.4e-30 135.2 319 41.7
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.6e-29 134.4 385 38.7
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.6e-29 134.4 415 30.6
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 2.1e-29 134.0 407 36.4
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 6.1e-29 132.5 352 35.5
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 6.1e-29 132.5 305 41.0
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 6.1e-29 132.5 420 32.6
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 8.0e-29 132.1 403 36.2
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 1.4e-28 131.3 385 36.4
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.8e-28 131.0 116 54.3
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 3.0e-28 130.2 407 35.4
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 1.2e-27 128.3 255 32.5
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 4.4e-27 126.3 346 34.4
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 5.7e-27 125.9 359 32.0
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 9.8e-27 125.2 419 31.0
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 9.8e-27 125.2 354 30.2
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 2.8e-26 123.6 399 31.6
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 4.8e-26 122.9 108 55.6
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 6.3e-26 122.5 336 38.4
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 4.1e-25 119.8 309 31.4
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 2.7e-24 117.1 357 29.7
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 4.5e-24 116.3 324 38.9
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 1.7e-23 114.4 353 38.8
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 6.6e-23 112.5 93 60.2
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 1.5e-22 111.3 93 58.1
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 5.5e-22 109.4 305 32.1
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 5.5e-22 109.4 103 53.4
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 2.8e-21 107.1 106 51.9
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 4.7e-21 106.3 348 36.2
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 6.1e-21 105.9 316 38.6
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 8.0e-21 105.5 92 59.8
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 1.5e-19 101.3 231 32.0
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 2.4e-17 94.0 116 45.7
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 1.9e-14 84.3 204 30.4
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.8e-12 77.8 89 46.1
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 3.1e-12 77.0 97 41.2
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 4.0e-12 76.6 70 57.1
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 2.0e-11 74.3 74 52.7
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 2.2e-10 70.9 288 34.4
FAN07G1029 Fragaria x ananassa HOM05D005773 ORTHO05D006930 3.7e-10 70.1 141 38.3
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 7.0e-09 65.9 90 44.4
arahy.Tifrunner.gnm1.ann1.V4J88K Arachis hypogaea HOM05D005773 ORTHO05D006930 2.0e-08 64.3 136 36.8
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 1.0e-07 62.0 92 34.8
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 1.3e-07 61.6 50 56.0
Pp3c17_20330 Physcomitrium patens HOM05D029403 ORTHO05D006930 1.3e-07 61.6 61 44.3
SMO356G0556 Selaginella moellendorffii HOM05D005773 ORTHO05D006930 2.3e-07 60.8 98 35.7
Mapoly0035s0141 Marchantia polymorpha HOM05D005773 ORTHO05D006930 3.0e-07 60.5 100 37.0
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 1.5e-06 58.2 46 58.7
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 5.6e-06 56.2 78 39.7


User provided reference genes

Program Settings