Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 5.5e-65 250.8 120 100.0
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 1.4e-57 226.1 121 88.4
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 1.2e-56 223.0 120 88.3
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 1.0e-47 193.4 120 75.8
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 5.7e-46 187.6 120 75.8
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 3.7e-45 184.9 121 70.2
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 2.2e-34 149.1 123 68.3
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 1.9e-33 146.0 137 54.7
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 1.2e-32 143.3 138 55.8
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 3.6e-32 141.7 139 52.5
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 4.7e-32 141.4 136 55.9
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 4.7e-32 141.4 132 58.3
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 1.8e-31 139.4 142 56.3
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 1.8e-31 139.4 136 55.9
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 1.8e-31 139.4 123 56.1
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 1.8e-31 139.4 132 57.6
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 1.8e-31 139.4 133 53.4
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 2.3e-31 139.0 144 51.4
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 3.0e-31 138.7 125 58.4
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 3.0e-31 138.7 139 51.8
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 3.9e-31 138.3 126 61.9
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 2.6e-30 135.6 134 53.0
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 4.4e-30 134.8 145 49.0
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 1.4e-28 129.8 127 52.0
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 1.4e-28 129.8 145 51.0
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 4.1e-28 128.3 125 52.0
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 2.6e-27 125.6 128 55.5
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 2.6e-27 125.6 128 55.5
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 2.6e-27 125.6 128 55.5
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 4.5e-27 124.8 117 57.3
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 5.9e-27 124.4 136 53.7
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.7e-26 122.9 134 51.5
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.2e-26 122.5 134 51.5
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 2.9e-26 122.1 129 53.5
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 2.9e-26 122.1 122 54.9
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 5.0e-26 121.3 124 51.6
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 5.0e-26 121.3 121 48.8
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.1e-25 120.2 125 50.4
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.5e-25 119.8 125 49.6
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 3.2e-25 118.6 128 54.7
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 7.2e-25 117.5 127 49.6
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 2.1e-24 115.9 136 49.3
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 2.7e-24 115.5 127 47.2
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 8.0e-24 114.0 131 49.6
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.4e-23 113.2 125 50.4
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.8e-23 112.8 125 49.6
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 3.0e-23 112.1 133 50.4
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 6.7e-23 110.9 130 48.5
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.5e-22 109.8 138 47.1
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 2.0e-22 109.4 118 45.8
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 2.0e-22 109.4 126 49.2
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 2.6e-22 109.0 124 50.8
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 4.4e-22 108.2 130 46.2
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 5.7e-22 107.8 124 50.0
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 3.7e-21 105.1 130 51.5
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 1.1e-20 103.6 126 47.6
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 1.4e-20 103.2 101 54.5
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 1.4e-20 103.2 126 46.0
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 1.4e-20 103.2 113 54.0
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 2.4e-20 102.4 127 46.5
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 3.1e-20 102.1 100 52.0
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 1.2e-19 100.1 100 51.0
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 1.2e-19 100.1 100 51.0
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 1.6e-19 99.8 118 47.5
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 1.6e-19 99.8 114 50.0
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 1.3e-18 96.7 97 52.6
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 1.3e-18 96.7 118 45.8
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 2.2e-18 95.9 98 55.1
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 8.5e-18 94.0 94 53.2
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 8.5e-18 94.0 99 51.5
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 2.5e-17 92.4 93 52.7
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 7.2e-17 90.9 94 48.9
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 7.0e-12 74.3 85 38.8
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 2.0e-11 72.8 130 40.8
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.0e-10 70.5 47 68.1
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 1.1e-09 67.0 124 33.9
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 9.5e-09 63.9 58 55.2
MSTRG.813 Avicennia marina HOM05D002803 ORTHO05D003089 3.0e-07 58.9 147 27.2
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 3.0e-07 58.9 34 70.6
unitig_52.g17150 Utricularia gibba HOM05D002803 ORTHO05D003089 4.0e-07 58.5 110 37.3
CiPaw.16G083500 Carya illinoinensis HOM05D002803 ORTHO05D003089 5.2e-07 58.2 50 58.0
BcaB04g17373 Brassica carinata HOM05D002803 ORTHO05D003089 6.8e-07 57.8 52 48.1
BcaC07g37087 Brassica carinata HOM05D002803 ORTHO05D003089 6.8e-07 57.8 52 48.1
A08p04240 Brassica napus HOM05D002803 ORTHO05D003089 6.8e-07 57.8 52 48.1
C08p04510 Brassica napus HOM05D002803 ORTHO05D003089 6.8e-07 57.8 52 48.1
BolC8t47256H Brassica oleracea HOM05D002803 ORTHO05D003089 6.8e-07 57.8 52 48.1
BraA08t32452Z Brassica rapa HOM05D002803 ORTHO05D003089 6.8e-07 57.8 52 48.1
CiPaw.16G083600 Carya illinoinensis HOM05D002803 ORTHO05D003089 8.9e-07 57.4 44 61.4
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 1.2e-06 57.0 85 35.3
AT1G49000 Arabidopsis thaliana HOM05D002803 ORTHO05D003089 1.5e-06 56.6 43 53.5
MD14G1221200 Malus domestica HOM05D002803 ORTHO05D003089 1.5e-06 56.6 49 51.0
MELO3C002073.2 Cucumis melo HOM05D002803 ORTHO05D003089 2.0e-06 56.2 55 47.3
Sed0004956 Sechium edule HOM05D002803 ORTHO05D003089 2.0e-06 56.2 43 62.8
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 2.0e-06 56.2 30 76.7
AL1G55870 Arabidopsis lyrata HOM05D002803 ORTHO05D003089 2.6e-06 55.8 43 53.5
ClCG04G011300 Citrullus lanatus HOM05D002803 ORTHO05D003089 2.6e-06 55.8 46 54.3
CsaV3_1G006470 Cucumis sativus L. HOM05D002803 ORTHO05D003089 2.6e-06 55.8 46 54.3
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.6e-06 55.8 34 64.7
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.6e-06 55.8 34 64.7
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 2.6e-06 55.8 74 33.8
Carub.0001s3818 Capsella rubella HOM05D002803 ORTHO05D003089 3.4e-06 55.5 60 43.3
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 3.4e-06 55.5 80 32.5
Eucgr.B00693 Eucalyptus grandis HOM05D002803 ORTHO05D003089 3.4e-06 55.5 41 56.1
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 3.4e-06 55.5 54 53.7
CSS0037901 Camellia sinensis var. sinensis HOM05D002803 ORTHO05D003089 4.4e-06 55.1 49 51.0
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 4.4e-06 55.1 44 45.5
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 4.4e-06 55.1 142 26.1
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 5.7e-06 54.7 41 56.1
Cc04_g07570 Coffea canephora HOM05D002803 ORTHO05D003089 7.5e-06 54.3 41 56.1
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 7.5e-06 54.3 45 51.1
THA.LOC104801662 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 7.5e-06 54.3 53 50.9
Aa31LG10G4930 Aethionema arabicum HOM05D002803 ORTHO05D003089 9.8e-06 53.9 42 52.4
Nitab4.5_0000410g0140 Nicotiana tabacum HOM05D002803 ORTHO05D003089 9.8e-06 53.9 52 50.0
Prupe.5G216600 Prunus persica HOM05D002803 ORTHO05D003089 9.8e-06 53.9 46 50.0


User provided reference genes

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