Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 8.8e-119 430.3 211 100.0
Psat1g152560 Pisum sativum HOM05D001550 ORTHO05D001611 6.2e-48 194.9 113 86.7
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 2.2e-45 186.4 113 84.1
Ca_02419_v3 Cicer arietinum L. HOM05D001550 ORTHO05D001611 2.0e-38 163.3 113 70.8
Medtr2g437350 Medicago truncatula HOM05D001550 ORTHO05D001611 1.4e-36 157.1 113 69.9
TPR.G21916 Trifolium pratense HOM05D001550 ORTHO05D001611 9.4e-36 154.5 114 70.2
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 6.9e-31 138.3 66 93.9
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-30 137.1 66 92.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.4e-30 136.0 66 90.9
VMungo1309G1422 Vigna mungo HOM05D001550 ORTHO05D001611 3.8e-29 132.5 115 60.0
Lj6g0002294 Lotus japonicus HOM05D001550 ORTHO05D001611 4.2e-28 129.0 108 61.1
Glyma.09G046300 Glycine max HOM05D001550 ORTHO05D001611 1.2e-27 127.5 108 62.0
Phvul.009G246100 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 3.6e-27 125.9 115 56.5
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 5.1e-26 122.1 96 62.5
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 5.1e-26 122.1 96 62.5
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 5.1e-26 122.1 96 62.5
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 6.7e-26 121.7 96 61.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 6.7e-26 121.7 96 61.5
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 6.7e-26 121.7 96 62.5
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 6.7e-26 121.7 96 61.5
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 8.8e-26 121.3 96 61.5
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 8.8e-26 121.3 96 62.5
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 8.8e-26 121.3 96 63.5
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 1.1e-25 120.9 96 61.5
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 2.0e-25 120.2 96 60.4
Glyma.15G154200 Glycine max HOM05D001550 ORTHO05D001611 2.6e-25 119.8 108 58.3
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 2.6e-25 119.8 96 60.4
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 3.3e-25 119.4 96 62.5
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 3.3e-25 119.4 96 59.4
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 4.4e-25 119.0 96 60.4
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 4.4e-25 119.0 96 60.4
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 4.4e-25 119.0 96 62.5
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 4.4e-25 119.0 96 61.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 4.4e-25 119.0 96 61.5
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 5.7e-25 118.6 96 61.5
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 5.7e-25 118.6 96 60.4
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 5.7e-25 118.6 96 61.5
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 5.7e-25 118.6 96 61.5
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 5.7e-25 118.6 96 60.4
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 59.4
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 60.4
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 60.4
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 61.5
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 61.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 59.4
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 59.4
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 61.5
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 59.4
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 7.4e-25 118.2 96 60.4
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 9.7e-25 117.9 96 61.5
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 1.3e-24 117.5 96 59.4
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 1.7e-24 117.1 96 60.4
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 1.7e-24 117.1 96 59.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 1.7e-24 117.1 96 59.4
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 1.7e-24 117.1 96 60.4
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 1.7e-24 117.1 96 60.4
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 1.7e-24 117.1 96 60.4
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 1.7e-24 117.1 96 59.4
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 2.2e-24 116.7 96 59.4
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 2.2e-24 116.7 96 59.4
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 2.2e-24 116.7 96 59.4
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 2.8e-24 116.3 96 60.4
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 2.8e-24 116.3 96 59.4
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 2.8e-24 116.3 95 58.9
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 3.7e-24 115.9 96 59.4
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 3.7e-24 115.9 96 59.4
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 3.7e-24 115.9 96 59.4
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 3.7e-24 115.9 96 59.4
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 3.7e-24 115.9 96 59.4
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 3.7e-24 115.9 96 57.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 4.8e-24 115.5 96 59.4
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 4.8e-24 115.5 96 57.3
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 6.3e-24 115.2 96 58.3
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 6.3e-24 115.2 96 59.4
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 8.2e-24 114.8 96 59.4
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 8.2e-24 114.8 96 57.3
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 8.2e-24 114.8 96 58.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 8.2e-24 114.8 96 57.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 8.2e-24 114.8 96 58.3
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 1.8e-23 113.6 96 57.3
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 1.8e-23 113.6 96 57.3
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 1.8e-23 113.6 96 58.3
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 2.4e-23 113.2 96 56.2
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 2.4e-23 113.2 96 56.2
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 2.4e-23 113.2 96 58.3
Glyma.07G249600 Glycine max HOM05D001550 ORTHO05D001611 3.1e-23 112.8 106 56.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 4.1e-23 112.5 96 55.2
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 4.1e-23 112.5 96 55.2
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 5.3e-23 112.1 96 55.2
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 5.3e-23 112.1 96 55.2
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 7.0e-23 111.7 96 56.2
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 7.0e-23 111.7 96 55.2
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 7.0e-23 111.7 96 55.2
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 7.0e-23 111.7 96 55.2
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 7.0e-23 111.7 96 55.2
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 7.0e-23 111.7 96 55.2
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 7.0e-23 111.7 96 55.2
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 7.0e-23 111.7 96 56.2
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 7.0e-23 111.7 95 57.9
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 7.0e-23 111.7 95 57.9
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 9.1e-23 111.3 96 57.3
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 9.1e-23 111.3 96 56.2
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 9.1e-23 111.3 136 49.3
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 9.1e-23 111.3 96 56.2
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 1.2e-22 110.9 56 85.7
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 1.2e-22 110.9 96 58.3
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 1.2e-22 110.9 96 56.2
VMungo1215G2563 Vigna mungo HOM05D001550 ORTHO05D001611 1.2e-22 110.9 114 53.5
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 1.5e-22 110.5 94 56.4
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 2.0e-22 110.2 96 55.2
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.0e-22 110.2 104 53.8
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 2.0e-22 110.2 96 58.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 2.0e-22 110.2 96 58.3
Glyma.17G024800 Glycine max HOM05D001550 ORTHO05D001611 2.6e-22 109.8 106 54.7
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 3.5e-22 109.4 96 54.2
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 3.5e-22 109.4 96 54.2
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 4.5e-22 109.0 96 54.2
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 4.5e-22 109.0 56 87.5
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 4.5e-22 109.0 56 87.5
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.5e-22 109.0 96 56.2
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.5e-22 109.0 96 56.2
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 1.7e-21 107.1 96 56.2
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 2.2e-21 106.7 56 82.1
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 2.2e-21 106.7 96 56.2
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 2.9e-21 106.3 96 54.2
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 3.8e-21 105.9 95 54.7
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 5.0e-21 105.5 66 72.7
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 6.5e-21 105.1 96 55.2
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 8.5e-21 104.8 96 53.1
Phvul.003G103100 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 1.9e-20 103.6 114 50.0
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.9e-20 103.6 56 76.8
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.9e-20 103.6 96 53.1
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 1.9e-20 103.6 96 53.1
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 7.2e-20 101.7 106 51.9
Lj4g0024545 Lotus japonicus HOM05D001550 ORTHO05D001611 9.4e-20 101.3 114 51.8
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.7e-19 99.8 96 47.9
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 4.7e-19 99.0 96 52.1
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.0e-18 97.8 56 78.6
Lalb_Chr15g0083591 Lupinus albus HOM05D001550 ORTHO05D001611 1.0e-18 97.8 114 48.2
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 8.8e-18 94.7 96 47.9
Lalb_Chr20g0114461 Lupinus albus HOM05D001550 ORTHO05D001611 1.5e-17 94.0 107 50.5
Psat2g128960 Pisum sativum HOM05D001550 ORTHO05D001611 2.0e-17 93.6 58 81.0
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.7e-16 90.5 46 84.8
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 2.2e-16 90.1 96 50.0
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 4.8e-16 89.0 96 39.6
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 8.2e-16 88.2 96 43.8
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 9.1e-15 84.7 104 41.3
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.2e-14 84.3 49 69.4
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 1.6e-14 84.0 96 49.0
VMungo0464G0790 Vigna mungo HOM05D002691 ORTHO05D026216 2.0e-14 83.6 69 60.9
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.3e-13 80.9 81 43.2
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 3.8e-13 79.3 66 57.6
Prupe.1G139000 Prunus persica HOM05D001550 ORTHO05D001611 7.2e-12 75.1 98 44.9
MD16G1172200 Malus domestica HOM05D001550 ORTHO05D001611 1.6e-11 73.9 95 45.3
CiPaw.01G150400 Carya illinoinensis HOM05D001550 ORTHO05D001611 1.4e-10 70.9 98 43.9
MD13G1170600 Malus domestica HOM05D001550 ORTHO05D001611 5.2e-10 68.9 98 40.8
Dinv44398 Davidia involucrata HOM05D001550 ORTHO05D001611 8.8e-10 68.2 112 40.2
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.2e-09 67.8 52 51.9
CiPaw.02G084400 Carya illinoinensis HOM05D001550 ORTHO05D001611 2.6e-09 66.6 98 42.9
Lalb_Chr18g0051791 Lupinus albus HOM05D001550 ORTHO05D001611 1.3e-08 64.3 108 38.9
Dinv38303 Davidia involucrata HOM05D001550 ORTHO05D001611 1.7e-08 63.9 66 50.0
CSS0012470 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 2.2e-08 63.5 115 35.7
MELO3C021346.2 Cucumis melo HOM05D001550 ORTHO05D001611 2.2e-08 63.5 131 37.4
CsaV3_6G017320 Cucumis sativus L. HOM05D001550 ORTHO05D001611 2.8e-08 63.2 64 53.1
QL06p008333 Quercus lobata HOM05D001550 ORTHO05D001611 1.1e-07 61.2 65 52.3
Lj6A673T89 Lonicera japonica HOM05D001550 ORTHO05D001611 1.4e-07 60.8 103 39.8
Oeu021108.1 Olea europaea HOM05D001550 ORTHO05D001611 2.4e-07 60.1 61 50.8
GSVIVG01017765001 Vitis vinifera HOM05D001550 ORTHO05D001611 2.4e-07 60.1 70 48.6
Atru.chr4.2803 Acer truncatum HOM05D001550 ORTHO05D001611 5.4e-07 58.9 48 58.3
ClCG06G005270 Citrullus lanatus HOM05D001550 ORTHO05D001611 7.0e-07 58.5 84 44.0
Gohir.D10G169200 Gossypium hirsutum HOM05D001550 ORTHO05D001611 1.6e-06 57.4 126 32.5
Manes.01G215600 Manihot esculenta HOM05D001550 ORTHO05D001611 1.6e-06 57.4 125 35.2
Gorai.011G188700 Gossypium raimondii HOM05D001550 ORTHO05D001611 2.0e-06 57.0 127 33.9
Sed0018217 Sechium edule HOM05D001550 ORTHO05D001611 2.0e-06 57.0 118 35.6
Gohir.A10G162800 Gossypium hirsutum HOM05D001550 ORTHO05D001611 2.7e-06 56.6 127 35.4
Lj2A1188G52 Lonicera japonica HOM05D001550 ORTHO05D001611 2.7e-06 56.6 117 37.6
Manes.03G193000 Manihot esculenta HOM05D001550 ORTHO05D001611 2.7e-06 56.6 86 44.2
Manes.05G066000 Manihot esculenta HOM05D001550 ORTHO05D001611 2.7e-06 56.6 66 48.5
Ciclev10004133m.g Citrus clementina HOM05D001550 ORTHO05D001611 3.5e-06 56.2 53 52.8
RcHm_v2.0_Chr4g0421671 Rosa chinensis HOM05D001550 ORTHO05D001611 4.5e-06 55.8 102 36.3
Actinidia40253 Actinidia chinensis HOM05D001550 ORTHO05D001611 5.9e-06 55.5 55 50.9
FAN07G1583 Fragaria x ananassa HOM05D001550 ORTHO05D001611 7.7e-06 55.1 102 35.3


User provided reference genes

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