Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 1.1e-107 393.3 196 100.0
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 1.0e-76 290.4 200 76.5
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 6.2e-74 281.2 200 75.5
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 3.9e-68 261.9 198 71.2
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.8e-66 255.8 198 70.2
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 6.2e-66 254.6 198 69.2
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 4.0e-65 251.9 198 69.2
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 5.8e-64 248.1 198 68.2
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 5.8e-64 248.1 198 68.2
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 5.8e-64 248.1 198 68.2
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 7.3e-59 231.1 200 64.0
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 9.5e-59 230.7 200 63.5
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 3.6e-58 228.8 201 61.2
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 5.2e-57 224.9 195 63.6
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 6.8e-57 224.6 199 63.8
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 8.9e-57 224.2 197 60.9
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 2.0e-56 223.0 198 60.6
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 8.4e-55 217.6 200 59.5
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 8.4e-55 217.6 200 60.0
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 1.6e-53 213.4 195 58.5
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 3.9e-52 208.8 201 56.7
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 6.6e-52 208.0 197 59.9
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 1.1e-51 207.2 196 62.2
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 7.3e-51 204.5 204 59.3
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 2.1e-50 203.0 195 53.3
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.6e-50 202.2 202 57.4
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 8.1e-50 201.1 179 62.6
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 8.1e-50 201.1 202 56.4
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.1e-49 200.7 202 56.9
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.4e-49 200.3 202 56.4
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 3.1e-49 199.1 198 58.1
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 3.1e-49 199.1 199 56.3
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 2.0e-48 196.4 195 51.3
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.3e-47 193.7 197 57.4
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 6.4e-47 191.4 196 52.6
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 6.4e-47 191.4 196 52.6
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 1.4e-46 190.3 208 52.9
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 3.2e-46 189.1 198 57.6
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 5.4e-46 188.3 198 52.0
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 9.3e-46 187.6 199 54.8
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 1.6e-45 186.8 198 52.0
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 2.1e-45 186.4 197 52.8
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 2.7e-45 186.0 186 55.4
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.7e-45 186.0 206 55.3
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 2.7e-45 186.0 206 55.3
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 4.6e-45 185.3 206 55.3
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 6.0e-45 184.9 186 55.4
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 6.0e-45 184.9 205 55.6
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 1.3e-44 183.7 197 50.3
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.3e-44 183.0 202 53.0
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 3.0e-44 182.6 203 53.7
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 3.0e-44 182.6 196 54.1
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 3.9e-44 182.2 189 57.1
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 3.9e-44 182.2 192 58.9
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 3.9e-44 182.2 194 51.5
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 1.9e-43 179.9 198 54.5
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 1.9e-43 179.9 202 52.0
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 2.5e-43 179.5 201 51.2
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 2.5e-43 179.5 199 51.3
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 3.3e-43 179.1 187 51.3
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 3.3e-43 179.1 187 51.3
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 5.6e-43 178.3 210 50.5
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 7.3e-43 177.9 196 52.6
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 7.3e-43 177.9 208 47.6
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 9.6e-43 177.6 198 50.5
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 1.6e-42 176.8 201 51.2
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 1.6e-42 176.8 200 50.5
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 2.1e-42 176.4 195 54.9
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 3.6e-42 175.6 207 49.3
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 3.6e-42 175.6 196 51.5
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 6.2e-42 174.9 199 51.3
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 8.1e-42 174.5 208 48.6
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 1.1e-41 174.1 208 48.6
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 1.4e-41 173.7 198 51.5
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 1.8e-41 173.3 200 48.0
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 2.4e-41 172.9 199 50.3
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 4.0e-41 172.2 199 50.3
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 6.9e-41 171.4 202 50.5
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 9.0e-41 171.0 200 50.5
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.5e-40 170.2 179 52.0
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.5e-40 170.2 163 58.3
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.5e-40 170.2 163 58.3
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 3.4e-40 169.1 212 47.6
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 5.8e-40 168.3 195 48.2
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 5.8e-40 168.3 194 47.4
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 7.6e-40 167.9 197 49.7
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 9.9e-40 167.5 201 48.3
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 1.7e-39 166.8 197 48.2
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 2.9e-39 166.0 199 48.7
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 1.9e-38 163.3 207 46.4
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 1.2e-37 160.6 230 44.3
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 1.6e-37 160.2 197 47.7
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 3.5e-37 159.1 200 47.0
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 8.7e-36 154.5 198 47.0
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 2.5e-35 152.9 184 46.7
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 7.4e-35 151.4 198 46.0
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 9.6e-35 151.0 175 50.3
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.1e-33 146.0 184 44.6
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 3.1e-33 146.0 195 43.1
CiPaw.08G090800 Carya illinoinensis HOM05D006641 ORTHO05D007573 4.0e-33 145.6 199 49.2
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 5.3e-33 145.2 198 44.9
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 9.0e-33 144.4 184 44.0
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 9.0e-33 144.4 182 44.5
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 2.1e-29 133.3 206 42.2
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 7.9e-29 131.3 207 41.5
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 2.5e-27 126.3 211 43.1
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 3.3e-27 125.9 202 40.6
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 1.2e-24 117.5 168 44.6
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 1.1e-22 110.9 215 37.2
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 1.1e-22 110.9 215 37.2
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 4.2e-22 109.0 215 36.7
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 4.2e-22 109.0 207 39.1
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 5.5e-22 108.6 215 38.6
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 7.1e-22 108.2 215 37.2
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 7.9e-21 104.8 213 36.6
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 7.9e-21 104.8 220 35.9
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 2.3e-20 103.2 218 36.7
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 3.0e-20 102.8 221 37.1
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 3.9e-20 102.4 216 36.6
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 5.1e-20 102.1 146 42.5
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 1.9e-19 100.1 212 34.9
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 1.9e-19 100.1 214 36.9
TWI75G0789 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 7.4e-19 98.2 118 49.2
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 9.7e-19 97.8 227 35.2
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 4.1e-17 92.4 218 33.0
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 8.5e-15 84.7 197 34.5
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 1.4e-14 84.0 214 32.7
CDE05G1007 Ceratophyllum demersum HOM05D006641 ORTHO05D007573 2.7e-13 79.7 121 40.5
SEGI_14616 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 4.3e-11 72.4 169 30.8
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 4.8e-10 68.9 211 29.9
FAN08G3433 Fragaria x ananassa HOM05D007478 ORTHO05D001700 1.1e-09 67.8 186 31.2
FAN13G0345 Fragaria x ananassa HOM05D007478 ORTHO05D001700 4.1e-09 65.9 186 31.2
Actinidia21410 Actinidia chinensis HOM05D000446 ORTHO05D000321 5.3e-09 65.5 95 46.3
FvH4_5g17470 Fragaria vesca HOM05D007478 ORTHO05D001700 6.9e-09 65.1 186 30.6
FAN18G0488 Fragaria x ananassa HOM05D007478 ORTHO05D001700 1.5e-08 63.9 186 30.1
Lj4g0014270 Lotus japonicus HOM05D007478 ORTHO05D001700 2.0e-08 63.5 183 27.9
ATR0326G051 Amborella trichopoda HOM05D001935 ORTHO05D001700 4.5e-08 62.4 172 29.7
CiPaw.15G144400 Carya illinoinensis HOM05D007478 ORTHO05D001700 4.5e-08 62.4 185 27.0
COL.COLO4_03618 Corchorus olitorius HOM05D001935 ORTHO05D001700 4.5e-08 62.4 180 30.6
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 4.5e-08 62.4 183 26.8
Glyma.08G055200 Glycine max HOM05D007478 ORTHO05D001700 1.0e-07 61.2 185 27.0
unitig_24.g30589 Utricularia gibba HOM05D001935 ORTHO05D001700 1.3e-07 60.8 183 29.5
SGA_v2.0_scaffold14G06923 Striga asiatica HOM05D001935 ORTHO05D001700 1.7e-07 60.5 115 33.0
Ciclev10012926m.g Citrus clementina HOM05D001935 ORTHO05D001700 2.2e-07 60.1 189 29.6
MD00G1054000 Malus domestica HOM05D001935 ORTHO05D001700 2.2e-07 60.1 204 30.9
ATR0326G068 Amborella trichopoda HOM05D001935 ORTHO05D001700 2.9e-07 59.7 109 33.0
Cpa.g.sc170.5 Carica papaya HOM05D001935 ORTHO05D001700 2.9e-07 59.7 187 31.0
RcHm_v2.0_Chr7g0178221 Rosa chinensis HOM05D007478 ORTHO05D001700 2.9e-07 59.7 186 29.6
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 2.9e-07 59.7 183 30.6
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 2.9e-07 59.7 190 28.9
unitig_22.g5581 Utricularia gibba HOM05D001935 ORTHO05D001700 2.9e-07 59.7 183 29.0
MSTRG.2193 Avicennia marina HOM05D001935 ORTHO05D001700 3.8e-07 59.3 190 27.9
Duzib211G0529 Durio zibethinus HOM05D001935 ORTHO05D001700 3.8e-07 59.3 183 27.3
Psat4g000040 Pisum sativum HOM05D007478 ORTHO05D001700 3.8e-07 59.3 167 27.5
Sed0024095 Sechium edule HOM05D007478 ORTHO05D001700 3.8e-07 59.3 185 29.2
CDE06G0938 Ceratophyllum demersum HOM05D001935 ORTHO05D001700 5.0e-07 58.9 90 37.8
Thecc.04G125800 Theobroma cacao HOM05D001935 ORTHO05D001700 5.0e-07 58.9 181 27.6
Atru.chr1.1571 Acer truncatum HOM05D001935 ORTHO05D001700 6.5e-07 58.5 192 28.6
Duzib133G0729 Durio zibethinus HOM05D001935 ORTHO05D001700 6.5e-07 58.5 177 28.2
Gorai.008G290600 Gossypium raimondii HOM05D007478 ORTHO05D001700 8.5e-07 58.2 185 28.1
Lsat_1_v5_gn_3_82980 Lactuca sativa HOM05D001935 ORTHO05D001700 8.5e-07 58.2 107 36.4
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 8.5e-07 58.2 193 30.1
Manes.14G171900 Manihot esculenta HOM05D007478 ORTHO05D001700 8.5e-07 58.2 185 27.6
Potri.010G116000 Populus trichocarpa HOM05D001935 ORTHO05D001700 8.5e-07 58.2 190 30.0
CiPaw.03G066100 Carya illinoinensis HOM05D001935 ORTHO05D001700 1.1e-06 57.8 175 29.7
Gohir.A12G269800 Gossypium hirsutum HOM05D007478 ORTHO05D001700 1.1e-06 57.8 185 28.1
Nitab4.5_0000350g0260 Nicotiana tabacum HOM05D001935 ORTHO05D001700 1.1e-06 57.8 105 37.1
Sopen02g035810 Solanum pennellii HOM05D001935 ORTHO05D001700 1.4e-06 57.4 170 28.2
DCAR_007278 Daucus carota HOM05D001935 ORTHO05D001700 2.5e-06 56.6 68 45.6
Solyc01g009490.1 Solanum lycopersicum HOM05D001935 ORTHO05D001700 2.5e-06 56.6 83 38.6
COL.COLO4_05000 Corchorus olitorius HOM05D007478 ORTHO05D001700 3.2e-06 56.2 184 27.7
VMungo0251G2682 Vigna mungo HOM05D007478 ORTHO05D001700 3.2e-06 56.2 122 32.0
GSVIVG01008464001 Vitis vinifera HOM05D007478 ORTHO05D001700 3.2e-06 56.2 183 29.0
Ca_17182_v3 Cicer arietinum L. HOM05D007478 ORTHO05D001700 4.2e-06 55.8 183 26.2
Glyma.05G246800 Glycine max HOM05D007478 ORTHO05D001700 4.2e-06 55.8 184 27.2
SEGI_11482 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 4.2e-06 55.8 178 26.4
Actinidia36351 Actinidia chinensis HOM05D001935 ORTHO05D001700 5.5e-06 55.5 170 27.1
Migut.E00401 Erythranthe guttata HOM05D001935 ORTHO05D001700 5.5e-06 55.5 103 34.0
Peaxi162Scf39498g00005 Petunia axillaris HOM05D001935 ORTHO05D001700 7.2e-06 55.1 105 36.2
THA.LOC104827233 Tarenaya hassleriana HOM05D001935 ORTHO05D001700 7.2e-06 55.1 95 35.8
Oeu004315.1 Olea europaea HOM05D001935 ORTHO05D001700 9.4e-06 54.7 181 29.3
Sabra04G0063200 Salix brachista HOM05D001935 ORTHO05D001700 9.4e-06 54.7 195 27.7
Thecc.03G058400 Theobroma cacao HOM05D007478 ORTHO05D001700 9.4e-06 54.7 184 25.5


User provided reference genes

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