Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 3.6e-144 515.0 277 100.0
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.0e-119 433.7 275 79.6
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 2.3e-119 432.6 275 80.0
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.3e-119 432.6 275 81.5
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.3e-119 432.6 275 83.6
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.1e-119 432.2 275 79.3
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 3.2e-116 422.2 249 87.6
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 9.2e-116 420.6 249 87.1
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.4e-103 380.2 276 75.0
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 4.4e-102 375.2 244 78.3
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 4.9e-101 371.7 275 74.5
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 6.0e-99 364.8 244 76.6
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 1.7e-98 363.2 249 75.9
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 1.7e-98 363.2 254 75.6
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 2.3e-98 362.8 249 75.5
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 5.1e-98 361.7 244 75.8
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 1.6e-96 356.7 269 69.5
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 2.8e-96 355.9 244 75.0
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.8e-95 351.3 247 74.1
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 2.6e-94 349.4 247 73.7
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.8e-94 348.2 247 73.3
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 2.9e-93 345.9 247 73.3
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 4.9e-93 345.1 247 73.3
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.4e-92 342.8 246 71.5
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.2e-92 342.4 246 71.5
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.2e-92 342.4 247 72.9
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 9.3e-92 340.9 246 72.8
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 6.0e-91 338.2 244 72.5
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 3.0e-90 335.9 245 70.6
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 6.6e-90 334.7 255 68.6
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 3.3e-89 332.4 256 69.5
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 5.6e-89 331.6 255 67.8
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.4e-87 326.2 255 67.8
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 4.0e-87 325.5 247 69.2
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 2.0e-86 323.2 223 74.4
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 3.4e-86 322.4 240 70.4
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 7.6e-86 321.2 222 75.2
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 9.9e-86 320.9 244 68.4
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 1.3e-85 320.5 240 69.6
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 1.3e-85 320.5 240 68.8
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 2.2e-85 319.7 247 68.4
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.9e-85 319.3 247 68.8
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 3.8e-85 318.9 247 68.0
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 6.4e-85 318.2 247 68.8
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.9e-84 316.6 246 69.1
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 1.9e-84 316.6 285 60.0
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.9e-84 316.6 247 67.6
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 3.2e-84 315.8 240 69.6
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 4.2e-84 315.5 259 64.9
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 4.2e-84 315.5 245 66.5
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 5.4e-84 315.1 210 77.1
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 7.1e-84 314.7 242 68.2
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.6e-83 313.5 247 67.6
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 2.7e-83 312.8 249 68.7
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.0e-82 310.8 248 69.0
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 5.1e-82 308.5 240 67.1
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 6.6e-82 308.1 246 67.1
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 8.7e-82 307.8 222 73.4
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.1e-81 307.4 232 71.6
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 1.9e-81 306.6 239 66.1
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 4.3e-81 305.4 247 64.0
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 7.4e-81 304.7 213 76.5
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 2.1e-80 303.1 211 75.4
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 8.1e-80 301.2 246 65.9
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 8.1e-80 301.2 211 74.4
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 4.0e-79 298.9 232 69.0
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 9.0e-79 297.7 188 79.3
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.2e-78 297.4 232 68.5
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 7.6e-78 294.7 248 64.5
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.7e-77 293.5 248 66.5
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.8e-77 292.4 232 68.1
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.1e-76 290.8 272 59.2
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 6.7e-74 281.6 252 62.3
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 6.7e-74 281.6 252 62.3
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 6.9e-71 271.6 266 59.8
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 6.9e-71 271.6 246 61.8
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 1.5e-70 270.4 250 60.8
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 7.6e-70 268.1 281 57.3
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.6e-70 268.1 218 65.1
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 2.5e-68 263.1 211 68.7
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 2.3e-66 256.5 247 60.3
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 2.8e-64 249.6 402 42.0
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 3.7e-64 249.2 254 58.7
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.4e-63 247.3 249 58.6
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.4e-63 247.3 245 60.8
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.4e-63 246.5 215 60.5
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 2.6e-62 243.0 250 58.0
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.4e-62 242.7 214 60.3
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.0e-61 241.1 247 56.7
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 2.5e-60 236.5 249 58.2
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.2e-60 235.7 188 66.5
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 6.1e-59 231.9 246 58.1
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 7.9e-59 231.5 246 58.1
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.0e-58 231.1 212 60.4
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.8e-58 230.3 242 57.4
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 2.3e-58 229.9 248 56.0
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 2.3e-58 229.9 248 56.0
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 2.3e-58 229.9 248 56.0
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 5.1e-58 228.8 242 57.9
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 8.7e-58 228.0 235 57.9
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 9.7e-57 224.6 242 56.2
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 2.2e-56 223.4 197 61.9
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 8.2e-56 221.5 185 66.5
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 1.4e-55 220.7 192 63.0
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 3.1e-55 219.5 221 56.6
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.0e-54 216.9 186 61.8
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 5.9e-54 215.3 221 56.1
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 5.0e-53 212.2 242 55.0
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 2.8e-48 196.4 274 46.4
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 3.1e-47 193.0 190 58.9
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 5.3e-47 192.2 179 60.9
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 1.3e-45 187.6 249 47.8
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 2.2e-45 186.8 288 46.9
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.1e-44 184.5 248 47.2
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 4.7e-43 179.1 224 54.5
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 3.5e-38 162.9 240 44.6
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.7e-32 142.9 174 48.3
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.4e-31 140.2 257 42.8
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 3.2e-28 129.8 126 59.5
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 5.5e-28 129.0 164 48.8
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 2.7e-27 126.7 152 50.7
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 6.3e-24 115.5 203 44.3
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.8e-23 114.0 56 96.4
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 3.1e-23 113.2 204 42.2
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 2.3e-18 97.1 164 46.3
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.7e-16 89.7 144 46.5
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 3.8e-13 79.7 50 74.0
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 1.1e-12 78.2 55 67.3
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.1e-12 78.2 87 50.6
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.3e-10 70.5 69 56.5
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 2.6e-09 67.0 50 66.0
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 1.8e-07 60.8 93 38.7
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 1.2e-06 58.2 43 65.1


User provided reference genes

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