Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 8.5e-106 387.1 209 100.0
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 3.3e-41 172.6 241 49.8
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 4.4e-38 162.2 236 54.2
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.8e-37 159.1 192 53.1
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.4e-36 157.1 192 52.1
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 9.3e-36 154.5 193 53.4
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.3e-36 154.5 193 53.4
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.3e-36 154.5 193 53.4
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 7.8e-35 151.4 188 51.6
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.9e-33 146.7 187 50.8
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 9.0e-31 137.9 180 46.7
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 5.8e-30 135.2 190 47.9
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 5.8e-30 135.2 179 48.0
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 4.9e-29 132.1 183 42.6
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 4.9e-29 132.1 184 46.2
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.4e-29 131.3 197 45.2
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.1e-28 131.0 178 46.6
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.4e-28 130.6 204 45.1
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.4e-28 130.6 204 45.1
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.4e-28 130.6 181 42.5
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.9e-28 130.2 185 42.7
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.9e-28 130.2 181 47.0
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.2e-28 129.4 173 48.0
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.2e-28 129.4 185 45.9
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 4.2e-28 129.0 178 43.8
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 4.2e-28 129.0 186 45.2
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.2e-28 129.0 187 46.0
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 5.4e-28 128.6 172 47.7
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 5.4e-28 128.6 189 43.4
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 9.3e-28 127.9 177 44.1
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 9.3e-28 127.9 174 44.8
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.2e-27 127.5 173 45.7
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.2e-27 127.5 184 44.0
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-27 127.1 177 47.5
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.1e-27 126.7 188 44.1
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 2.7e-27 126.3 186 41.4
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 2.7e-27 126.3 197 43.1
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.7e-27 126.3 181 49.2
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.7e-27 126.3 189 44.4
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.5e-27 125.9 184 44.6
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 4.6e-27 125.6 180 42.8
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 7.9e-27 124.8 179 46.9
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 7.9e-27 124.8 181 47.5
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.0e-26 124.4 176 43.8
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.3e-26 124.0 172 46.5
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.3e-26 124.0 176 43.8
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.8e-26 123.6 192 43.8
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.3e-26 123.2 183 43.7
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 5.1e-26 122.1 180 44.4
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.7e-26 121.7 190 43.2
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 6.7e-26 121.7 174 46.0
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 8.7e-26 121.3 196 43.4
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 8.7e-26 121.3 186 41.9
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 8.7e-26 121.3 183 43.7
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.1e-25 120.9 183 43.7
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.5e-25 120.6 188 43.1
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.9e-25 120.2 191 42.4
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.9e-25 120.2 182 45.6
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 2.5e-25 119.8 184 43.5
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.5e-25 119.8 186 41.4
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 4.3e-25 119.0 183 44.3
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 5.6e-25 118.6 181 43.1
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 7.4e-25 118.2 176 43.8
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 7.4e-25 118.2 183 45.4
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 9.6e-25 117.9 180 40.0
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.3e-24 117.5 175 44.6
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.3e-24 117.5 173 41.6
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.3e-24 117.5 185 41.6
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.6e-24 117.1 167 44.9
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.6e-24 117.1 178 44.4
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.6e-24 117.1 182 40.1
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.6e-24 117.1 189 38.6
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 3.7e-24 115.9 195 39.5
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 3.7e-24 115.9 187 43.3
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 4.8e-24 115.5 184 42.4
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.8e-24 115.5 173 42.2
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 6.2e-24 115.2 182 41.8
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 6.2e-24 115.2 182 41.2
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 6.2e-24 115.2 173 41.6
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 8.1e-24 114.8 180 43.9
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 8.1e-24 114.8 196 40.8
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-23 114.4 196 41.3
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.1e-23 114.4 175 38.9
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.8e-23 113.6 176 45.5
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 3.1e-23 112.8 174 40.8
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 3.1e-23 112.8 171 43.9
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 4.0e-23 112.5 179 41.3
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 6.9e-23 111.7 182 42.9
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 6.9e-23 111.7 174 44.3
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.9e-23 111.7 181 40.3
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 9.0e-23 111.3 180 42.8
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.0e-22 110.2 181 41.4
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 2.6e-22 109.8 174 39.7
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.6e-22 109.8 189 40.7
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.6e-22 109.8 183 40.4
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 3.4e-22 109.4 193 45.1
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.4e-22 109.4 182 43.4
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 3.4e-22 109.4 178 40.4
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 4.5e-22 109.0 181 43.1
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 4.5e-22 109.0 179 39.7
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 4.5e-22 109.0 179 39.7
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 4.5e-22 109.0 179 39.7
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 4.5e-22 109.0 181 43.1
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 4.5e-22 109.0 179 39.7
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 4.5e-22 109.0 181 43.1
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-22 109.0 178 43.8
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 7.6e-22 108.2 174 40.2
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 7.6e-22 108.2 177 41.8
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-21 107.5 186 38.2
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.3e-21 107.5 193 41.5
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.7e-21 107.1 188 40.4
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.7e-21 107.1 181 42.0
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 2.2e-21 106.7 196 42.3
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 4.9e-21 105.5 179 39.1
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 4.9e-21 105.5 178 41.0
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 6.5e-21 105.1 180 41.7
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 6.5e-21 105.1 180 41.7
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.1e-20 104.4 212 37.7
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-20 104.4 179 39.7
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.1e-20 104.4 176 43.8
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.1e-20 104.4 169 42.0
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.9e-20 103.6 174 40.2
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 9.3e-20 101.3 178 39.9
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.3e-20 101.3 190 37.4
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.3e-20 101.3 173 41.6
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 9.3e-20 101.3 175 39.4
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.2e-19 100.9 169 42.0
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.1e-19 100.1 183 40.4
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 2.7e-19 99.8 183 38.3
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.6e-19 99.0 182 39.6
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-18 97.1 181 36.5
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.7e-18 94.7 182 40.1
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 1.1e-17 94.4 193 38.3
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 4.3e-17 92.4 171 41.5
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 7.4e-17 91.7 174 39.7
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 9.6e-17 91.3 168 39.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-16 90.9 184 35.9
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.3e-16 90.9 181 34.3
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 3.7e-16 89.4 175 38.9
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-15 87.0 178 38.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 3.1e-15 86.3 155 38.7
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 3.1e-15 86.3 172 36.6
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.1e-15 86.3 167 40.7
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 4.0e-15 85.9 168 38.7
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-14 82.4 167 37.1
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 7.6e-14 81.6 178 38.2
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.3e-13 80.9 112 44.6
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.7e-13 80.5 165 38.8
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 2.2e-13 80.1 171 39.8
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.2e-13 80.1 178 35.4
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.8e-13 79.3 151 39.7
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.9e-12 77.0 106 42.5
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.5e-12 75.5 155 38.7
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 3.5e-11 72.8 206 31.6
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.3e-10 70.9 169 34.3
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-10 70.5 168 32.7
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 2.3e-10 70.1 197 33.5
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 8.7e-10 68.2 95 43.2
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-09 67.8 94 45.7
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 2.5e-09 66.6 167 35.3
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-09 66.6 99 41.4
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 1.3e-08 64.3 207 32.4
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-08 63.5 84 46.4
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.2e-08 63.5 155 34.2
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 6.3e-08 62.0 174 31.6
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.3e-08 62.0 93 43.0
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.4e-07 60.8 165 32.1
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 4.5e-06 55.8 174 26.4


User provided reference genes

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