Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 1.3e-94 349.7 177 100.0
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 3.6e-65 251.9 144 86.1
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 3.4e-63 245.4 144 84.0
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 2.2e-62 242.7 141 81.6
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 6.4e-62 241.1 142 81.0
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 6.4e-62 241.1 115 100.0
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 8.3e-62 240.7 141 81.6
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 3.2e-61 238.8 142 80.3
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 5.4e-61 238.0 139 81.3
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 3.5e-60 235.3 140 80.0
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 7.8e-60 234.2 138 79.7
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 3.0e-59 232.3 138 79.7
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 3.9e-59 231.9 139 81.3
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 1.9e-58 229.6 138 76.1
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.9e-58 229.6 139 79.1
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 2.5e-58 229.2 140 77.9
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 2.5e-58 229.2 139 78.4
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 1.2e-57 226.9 141 75.9
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 2.8e-57 225.7 146 74.7
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 4.7e-57 224.9 138 77.5
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 1.8e-56 223.0 138 76.8
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 2.3e-56 222.6 139 74.8
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 2.3e-56 222.6 138 76.1
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 2.3e-56 222.6 138 75.4
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 2.3e-56 222.6 138 76.8
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 8.9e-56 220.7 150 72.7
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 1.5e-55 219.9 138 74.6
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 5.8e-55 218.0 146 72.6
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 5.8e-55 218.0 138 76.8
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 5.8e-55 218.0 135 77.8
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 7.6e-55 217.6 139 75.5
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 7.6e-55 217.6 156 67.9
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 1.7e-54 216.5 138 75.4
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 1.7e-54 216.5 139 72.7
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 1.7e-54 216.5 138 71.0
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 2.2e-54 216.1 139 74.1
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 2.2e-54 216.1 138 72.5
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 2.9e-54 215.7 138 73.9
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 3.7e-54 215.3 139 71.2
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 4.9e-54 214.9 138 73.9
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 4.9e-54 214.9 138 70.3
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 6.4e-54 214.5 138 74.6
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 6.4e-54 214.5 168 65.5
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 6.4e-54 214.5 141 73.0
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 8.3e-54 214.2 142 68.3
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 1.1e-53 213.8 135 75.6
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 2.4e-53 212.6 138 75.4
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 2.4e-53 212.6 138 75.4
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 3.2e-53 212.2 140 72.9
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 7.1e-53 211.1 141 73.0
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 9.2e-53 210.7 138 73.9
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 9.2e-53 210.7 138 73.9
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 1.2e-52 210.3 144 70.1
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 1.6e-52 209.9 138 72.5
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 1.6e-52 209.9 138 71.7
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 1.6e-52 209.9 138 71.7
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 1.6e-52 209.9 138 70.3
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 2.1e-52 209.5 138 69.6
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 2.7e-52 209.1 140 70.0
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 4.6e-52 208.4 143 67.1
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 6.0e-52 208.0 138 71.7
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 7.8e-52 207.6 138 73.2
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 7.8e-52 207.6 138 70.3
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 7.8e-52 207.6 147 66.7
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 7.8e-52 207.6 138 71.0
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 2.3e-51 206.1 144 69.4
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 2.3e-51 206.1 141 71.6
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 6.6e-51 204.5 135 68.1
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 1.5e-50 203.4 139 69.1
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 1.5e-50 203.4 139 69.1
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 4.3e-50 201.8 136 70.6
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 5.6e-50 201.4 124 78.2
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 7.3e-50 201.1 136 71.3
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 9.6e-50 200.7 136 70.6
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 2.1e-49 199.5 136 71.3
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 2.1e-49 199.5 136 71.3
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 2.1e-49 199.5 138 71.0
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 2.8e-49 199.1 123 77.2
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 2.8e-49 199.1 138 72.5
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 4.7e-49 198.4 138 69.6
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 6.2e-49 198.0 136 70.6
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 6.2e-49 198.0 138 64.5
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 8.1e-49 197.6 137 69.3
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 8.1e-49 197.6 141 66.7
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 8.1e-49 197.6 130 72.3
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 8.1e-49 197.6 130 72.3
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 1.1e-48 197.2 136 69.1
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 1.8e-48 196.4 136 69.9
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 1.8e-48 196.4 138 68.8
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 4.0e-48 195.3 138 68.1
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 6.8e-48 194.5 136 68.4
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 8.9e-48 194.1 164 61.6
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 9.9e-47 190.7 139 66.9
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 2.9e-46 189.1 172 56.4
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 4.9e-46 188.3 136 66.2
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 2.4e-45 186.0 122 71.3
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 3.2e-45 185.7 155 63.9
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 3.2e-45 185.7 139 63.3
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 4.2e-45 185.3 138 65.2
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 5.4e-45 184.9 122 71.3
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 3.5e-44 182.2 127 70.9
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 3.5e-44 182.2 127 70.9
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 4.6e-44 181.8 127 70.9
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 6.6e-43 177.9 138 61.6
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 6.6e-43 177.9 110 73.6
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 8.7e-43 177.6 131 67.2
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 1.1e-42 177.2 140 58.6
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 1.1e-42 177.2 118 69.5
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.5e-42 176.8 119 72.3
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 2.5e-42 176.0 127 66.9
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 2.8e-41 172.6 138 61.6
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 4.8e-41 171.8 141 61.0
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 6.9e-40 167.9 107 72.0
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 2.2e-38 162.9 131 61.1
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 2.3e-35 152.9 111 65.8
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.3e-35 152.9 98 76.5
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 7.3e-34 147.9 119 53.8
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 2.8e-33 146.0 131 51.9
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 1.1e-32 144.1 95 72.6
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 3.1e-32 142.5 126 50.8
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 6.9e-32 141.4 119 51.3
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 1.2e-31 140.6 126 48.4
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 1.2e-31 140.6 104 61.5
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 2.6e-31 139.4 116 59.5
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 1.1e-29 134.0 129 46.5
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 6.7e-27 124.8 84 66.7
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 8.7e-27 124.4 89 66.3
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 3.3e-26 122.5 131 45.8
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 1.8e-24 116.7 90 63.3
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 6.2e-17 91.7 90 54.4
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 2.6e-15 86.3 73 57.5
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 5.9e-07 58.5 36 72.2
CsaV3_7G018800 Cucumis sativus L. HOM05D006058 ORTHO05D000001 2.9e-06 56.2 43 55.8


User provided reference genes

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