Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.0e-128 463.4 235 100.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-115 419.9 233 88.0
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 3.0e-115 418.7 233 88.4
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 6.2e-113 411.0 228 89.5
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-112 410.2 233 86.7
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 6.8e-112 407.5 233 85.4
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.8e-112 407.5 233 86.7
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 3.4e-111 405.2 228 89.5
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 5.8e-111 404.4 235 85.1
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-110 402.5 233 85.0
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.4e-109 397.9 233 84.5
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 7.8e-108 394.0 228 85.1
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 3.9e-107 391.7 233 82.8
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 3.3e-106 388.7 228 83.8
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.2e-105 386.7 230 83.5
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.8e-105 385.6 228 83.8
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 4.0e-104 381.7 233 80.7
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 6.8e-104 380.9 227 82.8
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.4e-103 378.6 233 80.3
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 4.9e-102 374.8 230 80.9
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 8.4e-102 374.0 228 81.6
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.4e-101 373.2 236 78.0
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 7.1e-101 370.9 227 79.3
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.2e-100 370.2 227 81.1
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 4.6e-100 368.2 228 78.9
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 7.8e-100 367.5 227 80.2
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.3e-99 365.9 227 81.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 5.1e-99 364.8 227 80.2
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 5.1e-99 364.8 227 79.3
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.1e-98 363.6 231 76.2
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.1e-98 363.6 227 79.7
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.5e-98 363.2 227 78.4
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.5e-98 362.5 230 77.8
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.3e-98 362.1 202 88.1
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 5.6e-98 361.3 233 73.4
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 5.6e-98 361.3 227 77.5
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 7.3e-98 360.9 235 75.3
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-97 360.1 233 78.1
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.3e-97 360.1 229 76.0
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.1e-97 359.4 227 79.3
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 2.1e-97 359.4 227 77.5
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 3.6e-97 358.6 233 73.4
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 4.8e-97 358.2 236 77.5
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 6.2e-97 357.8 233 75.1
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 6.2e-97 357.8 235 73.6
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 6.2e-97 357.8 227 78.9
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 8.1e-97 357.5 235 73.6
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.1e-96 357.1 233 72.5
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.1e-96 357.1 228 76.8
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.1e-96 357.1 234 76.5
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.4e-96 356.7 228 77.6
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.4e-96 356.7 230 74.3
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.8e-96 356.3 234 75.2
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-96 356.3 224 76.3
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 3.1e-96 355.5 231 74.5
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 3.1e-96 355.5 229 74.2
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 3.1e-96 355.5 233 71.2
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 6.9e-96 354.4 228 76.3
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 9.0e-96 354.0 228 74.1
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.0e-95 352.8 233 74.7
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.0e-95 352.8 227 77.5
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.0e-95 352.8 232 73.3
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 2.6e-95 352.4 227 77.1
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 3.4e-95 352.1 227 76.7
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 3.4e-95 352.1 228 75.9
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 7.6e-95 350.9 231 74.0
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 7.6e-95 350.9 226 75.7
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 9.9e-95 350.5 227 77.5
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 9.9e-95 350.5 234 70.9
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 2.2e-94 349.4 234 71.8
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 2.9e-94 349.0 228 73.2
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 2.9e-94 349.0 228 74.6
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.9e-94 349.0 227 76.2
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.8e-94 348.6 209 81.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 3.8e-94 348.6 227 75.8
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 6.4e-94 347.8 227 76.7
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.1e-93 347.1 228 73.2
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.1e-93 347.1 233 70.8
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.4e-93 346.7 227 75.3
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 2.4e-93 345.9 227 75.8
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.4e-93 344.7 218 79.8
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 9.3e-93 344.0 234 69.2
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.6e-92 343.2 229 72.5
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 2.7e-92 342.4 224 73.7
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.7e-92 342.4 227 75.8
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.6e-92 341.7 229 72.5
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.0e-91 340.5 229 72.9
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 3.0e-91 339.0 235 71.9
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.9e-91 338.6 228 71.5
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 5.1e-91 338.2 224 73.7
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 6.6e-91 337.8 228 71.9
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.6e-91 337.8 229 71.6
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 6.6e-91 337.8 229 71.6
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 8.7e-91 337.4 227 71.4
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.1e-90 337.0 228 71.5
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.1e-90 337.0 235 72.3
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.5e-90 336.7 223 73.1
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.5e-90 336.7 229 71.2
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.5e-90 336.7 227 74.0
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 5.6e-90 334.7 266 65.0
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 8.1e-89 330.9 228 69.7
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.8e-88 329.7 228 69.7
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.4e-88 329.3 228 69.3
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 2.4e-88 329.3 228 70.2
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.1e-88 328.9 313 55.9
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.0e-88 328.6 224 70.5
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 4.0e-88 328.6 228 69.7
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 5.3e-88 328.2 228 69.3
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 6.9e-88 327.8 228 70.2
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.0e-87 326.2 228 69.3
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.6e-87 325.9 224 70.5
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 3.4e-87 325.5 228 68.9
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 8.4e-86 320.9 228 68.4
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.1e-85 320.5 228 68.9
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.9e-85 319.7 227 68.3
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 5.5e-85 318.2 212 71.7
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.0e-83 313.9 227 67.8
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 3.0e-83 312.4 192 80.2
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.6e-81 306.6 224 67.9
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.7e-81 305.4 233 64.4
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 4.8e-81 305.1 223 68.6
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.1e-80 303.9 204 73.0
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.4e-80 303.5 192 77.1
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 2.9e-78 295.8 229 64.2
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.9e-78 295.0 221 65.6
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.1e-76 289.7 200 70.5
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.1e-76 289.7 227 63.9
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 6.3e-73 278.1 178 78.1
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-71 272.7 148 88.5
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.0e-70 270.8 238 60.1
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.3e-65 251.5 144 84.7
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.1e-61 240.7 133 85.7
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.1e-61 240.7 182 65.9
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 9.4e-61 237.7 226 52.2
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.2e-60 237.3 220 53.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.1e-60 236.5 213 59.2
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.7e-60 236.1 124 92.7
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.3e-59 233.0 221 51.1
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 8.8e-59 231.1 228 51.8
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.7e-54 216.9 144 75.7
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-51 206.8 120 80.0
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 8.8e-51 204.5 171 62.0
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 7.0e-48 194.9 143 69.9
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 3.8e-46 189.1 135 68.9
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.9e-45 186.8 142 63.4
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 2.3e-43 179.9 134 66.4
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.5e-42 177.2 147 60.5
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.5e-42 177.2 138 61.6
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-42 176.4 126 70.6
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.6e-39 167.2 191 46.1
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.6e-36 157.1 185 45.4
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 2.1e-36 156.8 191 47.6
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.3e-35 153.3 88 85.2
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 2.0e-34 150.2 85 82.4
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 5.7e-34 148.7 109 68.8
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.3e-33 147.5 97 73.2
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-33 147.1 130 56.9
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 3.1e-32 142.9 102 70.6
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 2.9e-30 136.3 78 85.9
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 3.2e-29 132.9 82 79.3
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 3.2e-29 132.9 85 77.6
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 7.2e-29 131.7 90 74.4
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.7e-28 129.0 85 71.8
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-27 127.1 103 60.2
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.8e-27 127.1 95 68.4
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.8e-27 127.1 96 63.5
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-27 126.7 90 72.2
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.0e-26 123.6 85 72.9
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.7e-25 120.6 120 56.7
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 2.2e-25 120.2 77 76.6
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 6.3e-25 118.6 98 66.3
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 3.1e-24 116.3 68 82.4
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 7.0e-24 115.2 85 67.1
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 3.7e-17 92.8 104 51.9
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 3.7e-17 92.8 210 30.0
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 6.4e-17 92.0 60 76.7
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 4.1e-16 89.4 51 86.3
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 7.0e-16 88.6 61 68.9
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 9.2e-16 88.2 75 60.0
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 1.5e-13 80.9 220 29.1
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.2e-10 71.2 49 65.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 2.0e-10 70.5 67 53.7
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 5.8e-10 68.9 187 27.3


User provided reference genes

Program Settings