Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G253400 Prunus persica HOM05D006618 ORTHO05D008291 8.4e-99 364.0 227 100.0
MD11G1299100 Malus domestica HOM05D006618 ORTHO05D008291 9.3e-66 254.2 237 73.8
MD03G1276600 Malus domestica HOM05D006618 ORTHO05D008291 1.7e-59 233.4 237 70.0
RcHm_v2.0_Chr6g0292701 Rosa chinensis HOM05D006618 ORTHO05D008291 2.6e-44 183.0 228 52.2
FvH4_2g24850 Fragaria vesca HOM05D006618 ORTHO05D008291 8.5e-43 177.9 227 50.7
FAN24G2031 Fragaria x ananassa HOM05D006618 ORTHO05D008291 8.5e-43 177.9 227 50.7
FAN27G1167 Fragaria x ananassa HOM05D006618 ORTHO05D008291 5.5e-42 175.3 227 49.8
CSS0038517 Camellia sinensis var. sinensis HOM05D006618 ORTHO05D008291 1.0e-40 171.0 227 55.9
CiPaw.08G099900 Carya illinoinensis HOM05D006618 ORTHO05D008291 2.0e-39 166.8 226 52.2
Hma1.2p1_0399F.1_g144140 Hydrangea macrophylla HOM05D006618 ORTHO05D008291 1.3e-38 164.1 230 50.0
Cfa006056 Carpinus fangiana HOM05D006618 ORTHO05D008291 3.7e-38 162.5 226 50.0
PGR119G1443 Punica granatum HOM05D006618 ORTHO05D008291 3.7e-38 162.5 231 49.4
FAN15G0256 Fragaria x ananassa HOM05D006618 ORTHO05D008291 4.1e-37 159.1 227 47.1
Peaxi162Scf01039g00026 Petunia axillaris HOM05D006618 ORTHO05D008291 2.0e-36 156.8 203 51.7
Potri.014G134700 Populus trichocarpa HOM05D006618 ORTHO05D008291 2.0e-36 156.8 227 50.7
Haze_04826 Corylus avellana HOM05D006618 ORTHO05D008291 2.6e-36 156.4 266 44.7
MSTRG.18188 Avicennia marina HOM05D006618 ORTHO05D008291 1.3e-35 154.1 222 48.6
Haze_04795 Corylus avellana HOM05D006618 ORTHO05D008291 2.9e-35 152.9 267 44.2
Dinv33000 Davidia involucrata HOM05D006618 ORTHO05D008291 1.5e-34 150.6 222 55.9
Hund18083 Selenicereus undatus HOM05D006618 ORTHO05D008291 2.5e-34 149.8 225 49.8
Manes.05G067500 Manihot esculenta HOM05D006618 ORTHO05D008291 3.2e-34 149.4 214 48.6
EL10Ac7g17390 Beta vulgaris HOM05D006618 ORTHO05D008291 7.2e-34 148.3 224 48.2
VMungo1383G0445 Vigna mungo HOM05D006618 ORTHO05D008291 9.4e-34 147.9 211 48.8
Solyc06g084500.3 Solanum lycopersicum HOM05D006618 ORTHO05D008291 2.1e-33 146.7 192 48.4
Glyma.03G209500 Glycine max HOM05D006618 ORTHO05D008291 3.6e-33 146.0 209 47.4
Phvul.001G202800 Phaseolus vulgaris HOM05D006618 ORTHO05D008291 3.6e-33 146.0 205 46.8
Atru.chr5.1237 Acer truncatum HOM05D006618 ORTHO05D008291 1.0e-32 144.4 222 48.6
Gorai.007G131200 Gossypium raimondii HOM05D006618 ORTHO05D008291 1.0e-32 144.4 181 50.8
COL.COLO4_08018 Corchorus olitorius HOM05D006618 ORTHO05D008291 1.8e-32 143.7 224 46.9
QL12p024238 Quercus lobata HOM05D006618 ORTHO05D008291 1.8e-32 143.7 226 46.5
Duzib211G0091 Durio zibethinus HOM05D006618 ORTHO05D008291 2.3e-32 143.3 225 47.1
Aqoxy5G00606 Aquilegia oxysepala HOM05D006618 ORTHO05D008291 3.0e-32 142.9 216 44.4
Sc17g0003540 Simmondsia chinensis HOM05D006618 ORTHO05D008291 5.2e-32 142.1 200 47.0
PGSC0003DMG400024043 Solanum tuberosum HOM05D006618 ORTHO05D008291 1.2e-31 141.0 208 46.2
Sopen06g035880 Solanum pennellii HOM05D006618 ORTHO05D008291 1.5e-31 140.6 194 47.4
AUR62036645 Chenopodium quinoa HOM05D006618 ORTHO05D008291 2.0e-31 140.2 231 47.2
Thhalv10028994m.g Eutrema salsugineum HOM05D006618 ORTHO05D008291 2.0e-31 140.2 223 45.3
Aa31LG5G2680 Aethionema arabicum HOM05D006618 ORTHO05D008291 3.4e-31 139.4 223 45.3
Sed0009421 Sechium edule HOM05D006618 ORTHO05D008291 3.4e-31 139.4 193 46.6
PSO170G6580 Papaver somniferum HOM05D006618 ORTHO05D008291 4.4e-31 139.0 200 47.0
THA.LOC104801197 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 7.5e-31 138.3 225 47.6
Nitab4.5_0012299g0010 Nicotiana tabacum HOM05D006618 ORTHO05D008291 9.8e-31 137.9 216 50.0
Sabra14G0100400 Salix brachista HOM05D006618 ORTHO05D008291 2.8e-30 136.3 227 46.7
vmacro02504 Vaccinium macrocarpon HOM05D006618 ORTHO05D008291 2.8e-30 136.3 279 42.3
Medtr7g108100 Medicago truncatula HOM05D006618 ORTHO05D008291 3.7e-30 136.0 217 46.1
PSO210G2131 Papaver somniferum HOM05D006618 ORTHO05D008291 4.8e-30 135.6 202 46.0
Sed0008392 Sechium edule HOM05D006618 ORTHO05D008291 6.3e-30 135.2 223 46.6
Duzib138G1186 Durio zibethinus HOM05D006618 ORTHO05D008291 1.1e-29 134.4 227 48.0
Oeu057561.4 Olea europaea HOM05D006618 ORTHO05D008008 1.4e-29 134.0 191 52.4
AT4G03180 Arabidopsis thaliana HOM05D006618 ORTHO05D008291 1.8e-29 133.7 208 47.1
ClCG09G006430 Citrullus lanatus HOM05D006618 ORTHO05D008291 5.4e-29 132.1 223 46.2
Ah.08g212660 Amaranthus hybridus HOM05D006618 ORTHO05D008291 7.0e-29 131.7 213 46.5
Glyma.19G206900 Glycine max HOM05D006618 ORTHO05D008291 7.0e-29 131.7 215 45.6
Cc01_g20320 Coffea canephora HOM05D006618 ORTHO05D008291 9.1e-29 131.3 188 45.7
Nn3g21320 Nelumbo nucifera HOM05D006618 ORTHO05D008291 1.2e-28 131.0 183 49.7
Sp6g03210 Schrenkiella parvula HOM05D006618 ORTHO05D008291 1.2e-28 131.0 225 43.6
SGA_v2.0_scaffold11G05756 Striga asiatica HOM05D006618 ORTHO05D008291 1.2e-28 131.0 216 48.6
TAR362G0318 Trochodendron aralioides HOM05D006618 ORTHO05D008291 1.2e-28 131.0 214 44.9
Lj1g0015584 Lotus japonicus HOM05D006618 ORTHO05D008291 2.0e-28 130.2 200 47.0
Carub.0006s3388 Capsella rubella HOM05D006618 ORTHO05D008291 2.7e-28 129.8 202 44.6
Lalb_Chr18g0047451 Lupinus albus HOM05D006618 ORTHO05D008291 2.7e-28 129.8 189 47.6
FAN20G2846 Fragaria x ananassa HOM05D006618 ORTHO05D008291 3.5e-28 129.4 200 46.5
CAN.G1209.34 Capsicum annuum HOM05D006618 ORTHO05D008291 5.9e-28 128.6 204 45.1
Ca_23188_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 1.0e-27 127.9 196 50.5
AL6G49760 Arabidopsis lyrata HOM05D006618 ORTHO05D008291 1.7e-27 127.1 223 43.9
BcaB05g23692 Brassica carinata HOM05D006618 ORTHO05D008291 1.7e-27 127.1 228 42.1
Lsat_1_v5_gn_9_4841 Lactuca sativa HOM05D006618 ORTHO05D008291 1.7e-27 127.1 232 45.3
Lj1C37G5 Lonicera japonica HOM05D000143 ORTHO05D000072 2.2e-27 126.7 186 49.5
Eucgr.H01207 Eucalyptus grandis HOM05D006618 ORTHO05D008291 3.8e-27 125.9 191 46.1
CARHR251610 Cardamine hirsuta HOM05D006618 ORTHO05D008291 6.5e-27 125.2 223 41.7
TWI12G0445 Tripterygium wilfordii HOM05D006618 ORTHO05D008291 6.5e-27 125.2 218 43.6
BolC3t16012H Brassica oleracea HOM05D006618 ORTHO05D008291 8.5e-27 124.8 223 42.2
CsaV3_7G028720 Cucumis sativus L. HOM05D006618 ORTHO05D008291 8.5e-27 124.8 201 46.8
Gohir.A11G117500 Gossypium hirsutum HOM05D006618 ORTHO05D008291 1.1e-26 124.4 216 42.1
Nitab4.5_0002093g0230 Nicotiana tabacum HOM05D006618 ORTHO05D008291 1.9e-26 123.6 202 49.5
C03p37140 Brassica napus HOM05D006618 ORTHO05D008291 2.5e-26 123.2 198 43.9
Ciclev10022357m.g Citrus clementina HOM05D006618 ORTHO05D008291 7.2e-26 121.7 228 42.5
Zm00001eb410530 Zea mays HOM05D006618 ORTHO05D008291 7.2e-26 121.7 176 47.7
BcaC01g06702 Brassica carinata HOM05D006618 ORTHO05D008291 2.1e-25 120.2 198 42.9
SalBow3G3170 Salvia bowleyana HOM05D006618 ORTHO05D008291 3.6e-25 119.4 195 46.2
MELO3C015900.2 Cucumis melo HOM05D006618 ORTHO05D008291 6.1e-25 118.6 213 44.1
Thecc.01G291700 Theobroma cacao HOM05D006618 ORTHO05D008291 1.0e-24 117.9 225 40.9
TPR.G32314 Trifolium pratense HOM05D006618 ORTHO05D008291 1.8e-24 117.1 228 43.9
Psat3g024440 Pisum sativum HOM05D006618 ORTHO05D008291 5.2e-24 115.5 216 46.8
HanXRQChr15g0466141 Helianthus annuus HOM05D006618 ORTHO05D008291 1.5e-23 114.0 220 43.6
BcaB01g02511 Brassica carinata HOM05D006618 ORTHO05D008291 5.7e-23 112.1 194 42.8
AUR62034630 Chenopodium quinoa HOM05D006618 ORTHO05D008291 7.5e-23 111.7 236 39.8
Migut.D00152 Erythranthe guttata HOM05D006618 ORTHO05D008291 1.3e-22 110.9 230 40.0
Os12g0538100 Oryza sativa ssp. japonica HOM05D006618 ORTHO05D008291 1.3e-22 110.9 183 48.1
BcaC03g16213 Brassica carinata HOM05D006618 ORTHO05D008291 1.1e-21 107.8 224 41.5
BolC2t10017H Brassica oleracea HOM05D006618 ORTHO05D008291 1.1e-21 107.8 224 41.5
Zm00001eb137700 Zea mays HOM05D006618 ORTHO05D008291 1.1e-21 107.8 172 43.6
ATR0706G074 Amborella trichopoda HOM05D006618 ORTHO05D008291 5.4e-21 105.5 203 41.9
ECA247G1808 Erigeron canadensis HOM05D006618 ORTHO05D008291 5.4e-21 105.5 217 41.5
HPP92_017865 Vanilla planifolia HOM05D006618 ORTHO05D008291 9.1e-21 104.8 198 41.4
Rhsim13G0016600 Rhododendron simsii HOM05D006618 ORTHO05D008291 2.0e-20 103.6 160 48.1
A02p25130 Brassica napus HOM05D006618 ORTHO05D008291 3.5e-20 102.8 224 40.2
GSVIVG01010994001 Vitis vinifera HOM05D006618 ORTHO05D008291 2.3e-19 100.1 174 44.3
C02p39890 Brassica napus HOM05D006618 ORTHO05D008291 6.6e-19 98.6 224 39.7
BraA02t07501Z Brassica rapa HOM05D006618 ORTHO05D008291 1.5e-18 97.4 224 39.3
MBI19_g13630_MAGBIO Magnolia biondii HOM05D006618 ORTHO05D008291 3.0e-16 89.7 226 35.8
Actinidia24851 Actinidia chinensis HOM05D006618 ORTHO05D008291 6.4e-14 82.0 144 43.8
Cfa006024 Carpinus fangiana HOM05D006618 ORTHO05D008291 8.3e-14 81.6 68 64.7
Ca_09115_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 1.4e-13 80.9 174 43.7
Gohir.D11G122400 Gossypium hirsutum HOM05D006618 ORTHO05D008291 1.4e-13 80.9 160 41.2
unitig_22.g5246 Utricularia gibba HOM05D006618 ORTHO05D008291 4.1e-13 79.3 186 39.2
arahy.Tifrunner.gnm1.ann1.160DKY Arachis hypogaea HOM05D006618 ORTHO05D008291 5.4e-13 79.0 200 37.5
arahy.Tifrunner.gnm1.ann1.1H6IZY Arachis hypogaea HOM05D006618 ORTHO05D008291 7.0e-13 78.6 203 35.0
CANSAT25G1401 Cannabis sativa HOM05D006618 ORTHO05D008291 9.2e-13 78.2 222 37.4
Atru.chr5.1270 Acer truncatum HOM05D006618 ORTHO05D008291 1.7e-11 73.9 112 49.1
Actinidia21075 Actinidia chinensis HOM05D006618 ORTHO05D008291 3.3e-10 69.7 67 65.7
BcaB05g22921 Brassica carinata HOM05D001082 ORTHO05D008291 2.1e-09 67.0 160 38.8
THA.LOC104827373 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 3.6e-09 66.2 72 52.8
SHI15557 Sapria himalayana HOM05D006618 ORTHO05D008291 1.4e-08 64.3 67 59.7
arahy.Tifrunner.gnm1.ann1.915FC2 Arachis hypogaea HOM05D006618 ORTHO05D008291 2.0e-07 60.5 175 36.6
arahy.Tifrunner.gnm1.ann1.MTA467 Arachis hypogaea HOM05D006618 ORTHO05D008291 2.9e-06 56.6 202 33.2


User provided reference genes

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