Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G252700 Prunus persica HOM05D007701 ORTHO05D006440 2.9e-59 231.9 134 100.0
QL12p024168 Quercus lobata HOM05D007701 ORTHO05D006440 3.2e-29 132.1 128 61.7
Potri.014G135100 Populus trichocarpa HOM05D007701 ORTHO05D006440 1.3e-27 126.7 134 62.7
Potri.002G207500 Populus trichocarpa HOM05D007701 ORTHO05D006440 6.6e-27 124.4 135 63.0
Gohir.A08G072500 Gossypium hirsutum HOM05D007701 ORTHO05D006440 3.4e-23 112.1 129 60.5
CiPaw.07G100300 Carya illinoinensis HOM05D007701 ORTHO05D006440 5.8e-23 111.3 133 55.6
Manes.05G068100 Manihot esculenta HOM05D007701 ORTHO05D006440 1.7e-22 109.8 137 56.9
Ciclev10022800m.g Citrus clementina HOM05D007701 ORTHO05D006440 2.4e-21 105.9 136 52.2
MD11G1298300 Malus domestica HOM05D007701 ORTHO05D006440 3.2e-21 105.5 130 61.5
Thecc.01G290700 Theobroma cacao HOM05D007701 ORTHO05D006440 5.4e-21 104.8 130 52.3
Gohir.D11G122900 Gossypium hirsutum HOM05D007701 ORTHO05D006440 9.2e-21 104.0 120 58.3
Gorai.007G131800 Gossypium raimondii HOM05D007701 ORTHO05D006440 9.2e-21 104.0 120 58.3
Duzib138G0471 Durio zibethinus HOM05D007701 ORTHO05D006440 1.6e-20 103.2 121 57.0
Ca_10375_v3 Cicer arietinum L. HOM05D007701 ORTHO05D006440 2.7e-20 102.4 131 52.7
Glyma.10G021700 Glycine max HOM05D007701 ORTHO05D006440 7.8e-20 100.9 130 56.9
Gohir.D08G080500 Gossypium hirsutum HOM05D007701 ORTHO05D006440 1.3e-19 100.1 129 56.6
Glyma.02G152500 Glycine max HOM05D007701 ORTHO05D006440 1.7e-19 99.8 130 56.9
Phvul.007G166400 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 1.7e-19 99.8 129 55.8
Gohir.A11G118000 Gossypium hirsutum HOM05D007701 ORTHO05D006440 3.0e-19 99.0 120 55.0
CANSAT25G3325 Cannabis sativa HOM05D007701 ORTHO05D006440 8.6e-19 97.4 140 52.9
Hma1.2p1_0209F.1_g089060 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 2.5e-18 95.9 136 50.0
COL.COLO4_08025 Corchorus olitorius HOM05D007701 ORTHO05D006440 9.5e-18 94.0 119 53.8
Medtr1g088970 Medicago truncatula HOM05D007701 ORTHO05D006440 2.1e-17 92.8 132 49.2
Cfa015502 Carpinus fangiana HOM05D007701 ORTHO05D006440 6.2e-17 91.3 128 50.8
Lalb_Chr02g0143101 Lupinus albus HOM05D007701 ORTHO05D006440 8.1e-17 90.9 130 50.8
CAN.G2895.2 Capsicum annuum HOM05D007701 ORTHO05D006440 1.1e-16 90.5 126 53.2
Nitab4.5_0002093g0180 Nicotiana tabacum HOM05D000530 ORTHO05D000621 4.0e-16 88.6 134 50.7
CAN.G426.28 Capsicum annuum HOM05D007701 ORTHO05D006440 6.8e-16 87.8 126 52.4
Nitab4.5_0004150g0050 Nicotiana tabacum HOM05D007701 ORTHO05D006440 6.8e-16 87.8 134 48.5
RcHm_v2.0_Chr6g0292601 Rosa chinensis HOM05D056889 ORTHO05D006440 8.9e-16 87.4 133 57.9
Hma1.2p1_0078F.1_g040840 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 1.2e-15 87.0 109 51.4
Dinv44434 Davidia involucrata HOM05D007701 ORTHO05D006440 1.5e-15 86.7 122 54.1
PGSC0003DMG400031864 Solanum tuberosum HOM05D007701 ORTHO05D006440 1.5e-15 86.7 122 50.0
Lj5g0017437 Lotus japonicus HOM05D007701 ORTHO05D006440 2.0e-15 86.3 130 56.2
Haze_01050 Corylus avellana HOM05D007701 ORTHO05D006440 4.4e-15 85.1 117 50.4
Solyc09g074450.1 Solanum lycopersicum HOM05D007701 ORTHO05D006440 1.7e-14 83.2 107 54.2
Sopen09g029300 Solanum pennellii HOM05D007701 ORTHO05D006440 1.7e-14 83.2 107 54.2
Gorai.004G085600 Gossypium raimondii HOM05D007701 ORTHO05D006440 1.1e-13 80.5 100 55.0
Duzib151G0788 Durio zibethinus HOM05D007701 ORTHO05D006440 2.4e-13 79.3 130 47.7
Lalb_Chr06g0163321 Lupinus albus HOM05D007701 ORTHO05D006440 4.1e-13 78.6 132 47.0
CiPaw.01G153900 Carya illinoinensis HOM05D007701 ORTHO05D006440 2.1e-12 76.3 129 50.4
CiPaw.08G100300 Carya illinoinensis HOM05D007701 ORTHO05D006440 4.6e-12 75.1 99 49.5
Dinv38332 Davidia involucrata HOM05D007701 ORTHO05D006440 6.0e-12 74.7 118 47.5
Glyma.15G098700 Glycine max HOM05D007701 ORTHO05D006440 6.0e-12 74.7 140 44.3
TWI14G1041 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 2.3e-11 72.8 130 49.2
Duzib133G0397 Durio zibethinus HOM05D007701 ORTHO05D006440 3.0e-11 72.4 121 47.9
Glyma.13G214500 Glycine max HOM05D007701 ORTHO05D006440 3.0e-11 72.4 144 41.7
Oeu021618.1 Olea europaea HOM05D007701 ORTHO05D006440 3.9e-11 72.0 128 46.1
Sopen11g019180 Solanum pennellii HOM05D000047 ORTHO05D000044 5.1e-11 71.6 92 52.2
Thecc.04G276200 Theobroma cacao HOM05D007701 ORTHO05D006440 6.6e-11 71.2 125 44.0
QL12p038321 Quercus lobata HOM05D007701 ORTHO05D006440 8.6e-11 70.9 131 45.0
Aa31LG1G29360 Aethionema arabicum HOM05D011411 ORTHO05D006440 1.5e-10 70.1 112 44.6
TWI59G1240 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 1.5e-10 70.1 129 44.2
Phvul.006G160600 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 1.9e-10 69.7 119 44.5
Carub.0004s3065 Capsella rubella HOM05D011411 ORTHO05D006440 7.3e-10 67.8 113 48.7
Potri.010G031700 Populus trichocarpa HOM05D007701 ORTHO05D006440 7.3e-10 67.8 116 50.9
Migut.D00227 Erythranthe guttata HOM05D007701 ORTHO05D006440 1.2e-09 67.0 131 42.7
Ca_00580_v3 Cicer arietinum L. HOM05D007701 ORTHO05D006440 1.6e-09 66.6 126 39.7
Thhalv10001715m.g Eutrema salsugineum HOM05D011411 ORTHO05D006440 1.6e-09 66.6 128 44.5
Sabra10G0031300 Salix brachista HOM05D007701 ORTHO05D006440 1.6e-09 66.6 81 60.5
TPR.G16944 Trifolium pratense HOM05D007701 ORTHO05D006440 1.6e-09 66.6 141 40.4
AL39U10120 Arabidopsis lyrata HOM05D011411 ORTHO05D006440 8.1e-09 64.3 133 42.1
AL4G47520 Arabidopsis lyrata HOM05D011411 ORTHO05D006440 8.1e-09 64.3 133 42.1
TWI09G0131 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 1.8e-08 63.2 134 39.6
Psat6g167920 Pisum sativum HOM05D007701 ORTHO05D006440 2.4e-08 62.8 105 45.7
CARHR143320 Cardamine hirsuta HOM05D011411 ORTHO05D006440 3.1e-08 62.4 134 41.8
Sp4g29850 Schrenkiella parvula HOM05D011411 ORTHO05D006440 5.2e-08 61.6 136 40.4
Duzib212G0358 Durio zibethinus HOM05D007701 ORTHO05D006440 8.9e-08 60.8 117 40.2
CiPaw.02G087100 Carya illinoinensis HOM05D007701 ORTHO05D006440 1.5e-07 60.1 128 39.8
AT2G47930 Arabidopsis thaliana HOM05D011411 ORTHO05D006440 2.6e-07 59.3 133 40.6
Medtr2g020370 Medicago truncatula HOM05D007701 ORTHO05D006440 2.6e-07 59.3 125 36.0
RcHm_v2.0_Chr4g0420861 Rosa chinensis HOM05D016333 ORTHO05D006440 7.6e-07 57.8 127 43.3
Potri.008G195700 Populus trichocarpa HOM05D007701 ORTHO05D006440 1.3e-06 57.0 117 46.2
SGA_v2.0_scaffold11G05758 Striga asiatica HOM05D007701 ORTHO05D006440 1.3e-06 57.0 129 41.9
C04p00020 Brassica napus HOM05D011411 ORTHO05D006440 2.2e-06 56.2 108 46.3
Eucgr.K03437 Eucalyptus grandis HOM05D007701 ORTHO05D006440 2.9e-06 55.8 139 40.3
COL.COLO4_13938 Corchorus olitorius HOM05D007701 ORTHO05D006440 3.8e-06 55.5 121 43.0
Sc19g0004910 Simmondsia chinensis HOM05D007701 ORTHO05D006440 3.8e-06 55.5 93 40.9
Phvul.001G202300 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 4.9e-06 55.1 140 40.7
TPR.G1519 Trifolium pratense HOM05D007701 ORTHO05D006440 8.4e-06 54.3 126 38.1


User provided reference genes

Program Settings