Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 8.1e-54 214.2 171 100.0
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 1.4e-34 150.2 159 74.8
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 1.2e-33 147.1 150 78.7
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.6e-25 120.2 165 65.5
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 2.5e-23 112.8 196 56.1
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 5.6e-23 111.7 169 59.8
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 3.7e-22 109.0 173 44.5
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.7e-22 109.0 173 48.6
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 4.8e-22 108.6 170 52.4
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 6.2e-22 108.2 174 48.9
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 1.8e-21 106.7 174 46.6
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 1.8e-21 106.7 174 46.6
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.4e-21 106.3 170 49.4
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 4.0e-21 105.5 176 54.0
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 4.0e-21 105.5 170 63.5
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 5.3e-21 105.1 172 47.1
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.2e-20 104.0 224 53.1
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.2e-20 104.0 171 56.7
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.5e-20 103.6 168 45.8
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.5e-20 103.6 222 54.1
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 2.6e-20 102.8 165 53.3
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 2.6e-20 102.8 175 50.3
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 4.5e-20 102.1 172 53.5
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 4.5e-20 102.1 175 61.1
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 1.0e-19 100.9 159 67.9
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 1.0e-19 100.9 174 52.3
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 1.0e-19 100.9 172 54.1
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 1.7e-19 100.1 169 59.8
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 2.2e-19 99.8 175 44.0
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 2.9e-19 99.4 171 47.4
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.9e-19 99.4 223 48.4
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.9e-19 99.4 223 48.4
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 2.9e-19 99.4 170 55.3
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 4.9e-19 98.6 170 58.2
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 6.5e-19 98.2 174 51.7
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 6.5e-19 98.2 174 53.4
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-18 97.4 165 52.7
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-18 97.4 165 56.4
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-18 97.4 165 55.2
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.1e-18 97.4 172 64.0
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.4e-18 97.1 173 42.2
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.9e-18 96.7 178 48.3
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.2e-18 95.5 178 52.2
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 4.2e-18 95.5 184 59.2
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 4.2e-18 95.5 164 35.4
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 4.2e-18 95.5 169 38.5
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 5.5e-18 95.1 161 52.2
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 5.5e-18 95.1 140 51.4
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.2e-17 94.0 177 48.0
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.1e-17 93.2 248 48.8
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 4.6e-17 92.0 175 39.4
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 6.0e-17 91.7 149 55.0
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 2.3e-16 89.7 165 52.7
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 2.3e-16 89.7 187 55.1
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.3e-16 89.7 209 55.5
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 3.0e-16 89.4 151 66.2
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 3.0e-16 89.4 165 49.7
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.9e-16 89.0 171 49.1
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 5.1e-16 88.6 166 48.2
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 6.7e-16 88.2 140 62.9
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 6.7e-16 88.2 192 53.1
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 6.7e-16 88.2 171 53.2
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 6.7e-16 88.2 162 59.3
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 8.7e-16 87.8 163 55.2
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.1e-15 87.4 206 41.3
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.5e-15 87.0 183 52.5
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.9e-15 86.7 165 64.8
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 2.5e-15 86.3 170 49.4
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.5e-15 86.3 163 35.6
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 2.5e-15 86.3 164 38.4
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 3.3e-15 85.9 162 51.9
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 4.3e-15 85.5 163 45.4
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 4.3e-15 85.5 165 63.6
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 5.7e-15 85.1 167 57.5
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 7.4e-15 84.7 167 37.1
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.4e-15 84.7 163 42.9
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 9.6e-15 84.3 166 63.3
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 9.6e-15 84.3 165 44.2
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 1.3e-14 84.0 169 46.7
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.3e-14 84.0 170 40.6
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.6e-14 83.6 166 52.4
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.6e-14 83.6 166 51.2
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.8e-14 82.8 171 50.3
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 4.8e-14 82.0 176 42.0
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.2e-14 81.6 164 44.5
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.2e-14 81.6 162 47.5
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.1e-13 80.9 54 61.1
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.4e-13 80.5 168 50.0
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 1.4e-13 80.5 161 44.7
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.4e-13 80.5 53 58.5
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.4e-13 80.5 55 56.4
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 4.1e-13 79.0 162 50.6
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 4.1e-13 79.0 50 66.0
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 4.1e-13 79.0 50 66.0
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 4.1e-13 79.0 50 66.0
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 4.1e-13 79.0 50 66.0
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 4.1e-13 79.0 139 59.7
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 4.1e-13 79.0 51 58.8
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 4.1e-13 79.0 54 57.4
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 6.9e-13 78.2 135 45.9
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 9.0e-13 77.8 171 40.9
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 9.0e-13 77.8 139 47.5
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 1.5e-12 77.0 50 64.0
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 2.0e-12 76.6 158 37.3
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.6e-12 76.3 50 62.0
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.6e-12 76.3 50 62.0
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 2.6e-12 76.3 167 49.1
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 4.5e-12 75.5 50 62.0
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 4.5e-12 75.5 50 62.0
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 4.5e-12 75.5 50 62.0
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 4.5e-12 75.5 50 62.0
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.5e-12 75.5 158 47.5
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 5.8e-12 75.1 50 62.0
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 5.8e-12 75.1 50 62.0
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 5.8e-12 75.1 213 50.2
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 5.8e-12 75.1 220 49.1
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 5.8e-12 75.1 50 62.0
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.8e-12 75.1 158 47.5
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 5.8e-12 75.1 158 47.5
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 5.8e-12 75.1 134 42.5
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.6e-12 74.7 162 46.3
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 7.6e-12 74.7 164 31.1
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.3e-11 73.9 50 54.0
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.7e-11 73.6 134 59.0
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.7e-11 73.6 154 52.6
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 3.8e-11 72.4 138 56.5
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 5.0e-11 72.0 169 47.3
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.0e-11 72.0 174 35.1
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 8.4e-11 71.2 165 32.1
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 8.4e-11 71.2 47 57.4
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.1e-10 70.9 48 58.3
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.1e-10 70.9 47 57.4
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.1e-10 70.9 47 55.3
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.9e-10 70.1 138 42.0
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.5e-10 69.7 47 53.2
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.5e-10 69.7 50 54.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 2.5e-10 69.7 172 40.7
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.2e-10 69.3 170 44.7
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.2e-10 69.3 170 49.4
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 4.2e-10 68.9 169 44.4
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.6e-09 67.0 170 31.2
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.1e-09 66.6 160 40.6
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 2.7e-09 66.2 158 48.1
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 2.3e-08 63.2 158 47.5
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 3.0e-08 62.8 45 51.1
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.0e-08 62.8 49 51.0
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 5.1e-08 62.0 42 57.1
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 6.7e-08 61.6 181 56.4
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-07 60.8 48 45.8
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-07 60.8 48 45.8
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 2.2e-06 56.6 125 35.2
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 3.7e-06 55.8 46 45.7
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 8.2e-06 54.7 47 48.9


User provided reference genes

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