Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 7.5e-141 503.8 250 100.0
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 1.2e-117 426.8 252 82.9
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 1.4e-110 403.3 252 79.8
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 2.9e-108 395.6 253 80.2
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 7.8e-106 387.5 260 78.1
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 1.8e-102 376.3 250 72.8
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 5.8e-101 371.3 255 71.8
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 6.4e-100 367.9 250 71.2
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 6.4e-100 367.9 248 71.8
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 5.4e-99 364.8 250 72.0
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.0e-97 360.5 302 66.9
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 2.3e-97 359.4 250 70.8
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 5.1e-97 358.2 250 70.4
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.5e-96 356.7 250 70.4
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.9e-96 356.3 250 69.2
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 3.3e-96 355.5 250 71.2
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 7.3e-96 354.4 250 71.2
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 9.5e-96 354.0 250 70.0
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 2.8e-95 352.4 250 68.4
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.1e-94 350.5 250 68.8
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 1.4e-94 350.1 251 69.7
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 1.8e-94 349.7 250 70.0
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 3.1e-94 349.0 249 69.5
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 8.9e-94 347.4 250 69.6
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 3.4e-93 345.5 250 69.6
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 5.8e-93 344.7 250 67.6
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 1.7e-92 343.2 250 67.6
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 1.9e-91 339.7 253 67.2
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 2.4e-91 339.3 250 66.8
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 3.2e-91 339.0 250 66.4
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 4.6e-90 335.1 250 66.0
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 6.0e-90 334.7 251 68.1
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 6.0e-90 334.7 251 68.1
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 7.8e-90 334.3 245 68.2
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 7.8e-90 334.3 250 65.6
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 1.0e-89 334.0 250 66.8
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 3.0e-89 332.4 250 64.8
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 3.0e-89 332.4 250 66.0
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 5.1e-89 331.6 251 66.1
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 6.6e-89 331.3 251 68.5
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 1.5e-88 330.1 242 68.6
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 1.9e-88 329.7 250 66.4
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 1.9e-88 329.7 245 68.6
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 3.3e-88 328.9 237 67.5
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 5.6e-88 328.2 226 68.6
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 7.3e-88 327.8 245 67.8
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 7.3e-88 327.8 251 68.1
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 9.6e-88 327.4 250 64.4
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 1.6e-87 326.6 250 65.6
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 1.8e-86 323.2 237 67.1
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 6.9e-86 321.2 251 64.9
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 6.9e-86 321.2 251 65.3
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 8.9e-86 320.9 252 63.5
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 3.4e-85 318.9 251 62.9
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 5.8e-85 318.2 243 65.8
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 5.8e-85 318.2 315 55.2
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 5.8e-85 318.2 248 62.9
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 7.6e-85 317.8 252 64.3
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 1.3e-84 317.0 248 64.9
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 2.2e-84 316.2 226 67.3
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 9.3e-83 310.8 246 64.6
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 9.3e-83 310.8 250 62.8
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 1.2e-82 310.5 251 62.9
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 2.1e-82 309.7 250 62.4
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 4.6e-82 308.5 250 62.8
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 6.0e-82 308.1 251 62.9
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 6.0e-82 308.1 251 62.5
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 7.8e-82 307.8 226 67.7
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 5.1e-81 305.1 234 64.1
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 5.1e-81 305.1 251 62.5
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 1.5e-80 303.5 250 61.6
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 1.5e-80 303.5 255 60.8
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 3.3e-80 302.4 251 61.0
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 9.6e-80 300.8 277 54.5
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 1.6e-79 300.1 301 52.8
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 1.6e-79 300.1 251 61.4
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.6e-79 300.1 219 69.9
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 2.1e-79 299.7 257 61.1
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 2.8e-79 299.3 261 60.2
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 1.4e-78 297.0 250 62.4
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 1.4e-78 297.0 200 72.5
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 3.4e-77 292.4 250 58.8
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 3.4e-77 292.4 258 58.1
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 8.4e-76 287.7 250 58.0
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.9e-75 286.6 239 59.8
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 4.6e-74 282.0 253 57.7
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 4.6e-74 282.0 233 60.1
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 1.0e-73 280.8 250 58.0
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 3.3e-72 275.8 187 70.6
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 9.6e-72 274.2 247 57.1
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 4.5e-69 265.4 189 68.3
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 5.8e-69 265.0 199 66.8
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 3.8e-68 262.3 246 51.2
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 2.4e-67 259.6 212 58.5
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 3.2e-67 259.2 243 51.4
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 5.5e-67 258.5 187 67.4
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 3.5e-66 255.8 208 58.7
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 3.5e-66 255.8 245 51.0
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 1.1e-64 250.8 248 51.2
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.9e-59 233.4 208 56.7
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 5.3e-54 215.3 151 66.2
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 1.5e-53 213.8 165 63.6
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 9.7e-40 167.9 217 41.0
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 1.9e-35 153.7 120 65.0
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 7.2e-35 151.8 176 44.9
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 1.2e-24 117.9 206 35.4
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.2e-24 117.9 232 34.1
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.5e-24 117.5 225 34.7
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 2.4e-22 110.2 164 36.6
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 4.0e-17 92.8 208 33.2
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 5.2e-17 92.4 165 32.1
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 4.4e-16 89.4 126 42.9
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 1.3e-15 87.8 65 67.7
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.2e-15 87.0 127 40.9
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 6.5e-12 75.5 78 50.0
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.6e-10 70.9 67 53.7
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 1.4e-06 57.8 44 59.1
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 1.4e-06 57.8 44 59.1


User provided reference genes

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