Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 4.7e-73 277.7 136 100.0
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 2.9e-54 215.3 136 76.5
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 3.8e-54 214.9 134 77.6
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 1.0e-51 206.8 134 73.9
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 6.6e-51 204.1 134 73.1
FAN15G1162 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.4e-45 186.4 127 70.9
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 1.4e-45 186.4 128 66.4
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 2.4e-45 185.7 128 69.5
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 3.2e-45 185.3 133 65.4
FAN20G2906 Fragaria x ananassa HOM05D006839 ORTHO05D007872 5.4e-45 184.5 127 70.9
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 9.3e-45 183.7 128 68.8
FAN27G2541 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.6e-44 183.0 130 68.5
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 2.1e-44 182.6 118 69.5
COL.COLO4_09110 Corchorus olitorius HOM05D006839 ORTHO05D007872 2.7e-44 182.2 132 62.9
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 4.6e-44 181.4 127 66.9
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 1.8e-43 179.5 139 63.3
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 5.1e-43 177.9 139 62.6
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 5.1e-43 177.9 128 64.8
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 7.4e-42 174.1 133 63.9
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 1.6e-41 172.9 134 61.9
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.6e-41 172.9 133 63.9
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.6e-41 172.9 133 63.9
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 2.1e-41 172.6 135 58.5
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 2.8e-41 172.2 132 62.1
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 2.8e-41 172.2 133 62.4
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 2.8e-41 172.2 130 63.8
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 3.7e-41 171.8 133 60.9
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 3.7e-41 171.8 131 58.8
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 3.7e-41 171.8 127 64.6
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 1.1e-40 170.2 127 64.6
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 1.8e-40 169.5 131 60.3
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 2.4e-40 169.1 130 60.8
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 3.1e-40 168.7 110 68.2
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 6.9e-40 167.5 128 61.7
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 9.0e-40 167.2 136 61.0
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 1.2e-39 166.8 127 59.1
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 2.0e-39 166.0 125 60.0
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 2.0e-39 166.0 129 60.5
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 7.6e-39 164.1 125 59.2
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 7.6e-39 164.1 119 63.9
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 9.9e-39 163.7 128 62.5
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 9.9e-39 163.7 135 59.3
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 1.3e-38 163.3 128 60.2
QL12p022082 Quercus lobata HOM05D006839 ORTHO05D007872 2.9e-38 162.2 121 63.6
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 2.9e-38 162.2 135 58.5
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 3.8e-38 161.8 134 56.7
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 4.9e-38 161.4 136 57.4
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 3.2e-37 158.7 119 63.0
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 3.2e-37 158.7 124 58.1
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 4.2e-37 158.3 123 58.5
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 5.5e-37 157.9 122 61.5
Medtr7g094760 Medicago truncatula HOM05D006839 ORTHO05D007872 2.7e-36 155.6 119 58.8
Migut.D00285 Erythranthe guttata HOM05D006839 ORTHO05D007872 1.3e-35 153.3 131 53.4
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 3.0e-35 152.1 137 56.2
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.0e-35 152.1 129 56.6
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 1.5e-34 149.8 126 57.9
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 4.8e-33 144.8 136 51.5
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 4.8e-33 144.8 136 51.5
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.4e-32 143.3 120 55.8
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.8e-32 142.9 137 51.1
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 2.4e-32 142.5 132 53.8
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 2.4e-32 142.5 137 51.1
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 6.9e-32 141.0 115 56.5
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.6e-31 139.0 137 50.4
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 1.1e-29 133.7 116 53.4
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 1.9e-29 132.9 127 52.8
Rhsim01G0275200 Rhododendron simsii HOM05D006839 ORTHO05D007872 1.9e-29 132.9 107 57.9
SalBow7G1292 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.1e-28 129.4 123 48.8
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 4.1e-24 115.2 131 43.5
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 1.5e-23 113.2 117 46.2
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.0e-23 112.8 117 42.7
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 3.4e-23 112.1 117 47.9
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 5.9e-23 111.3 133 45.9
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.0e-22 110.5 128 44.5
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.3e-22 110.2 136 44.1
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 2.2e-22 109.4 133 39.1
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 5.0e-22 108.2 136 43.4
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 6.5e-22 107.8 105 46.7
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 8.5e-22 107.5 136 42.6
Peaxi162Scf00681g00001 Petunia axillaris HOM05D006839 ORTHO05D007872 8.5e-22 107.5 133 41.4
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 1.4e-21 106.7 122 40.2
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 1.2e-20 103.6 127 40.9
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.2e-20 103.6 121 43.0
Peaxi162Scf00681g00007 Petunia axillaris HOM05D006839 ORTHO05D007872 3.6e-20 102.1 125 40.8
Nitab4.5_0000771g0180 Nicotiana tabacum HOM05D006839 ORTHO05D007872 4.6e-20 101.7 138 43.5
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.0e-19 99.0 122 41.8
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.9e-19 98.6 114 41.2
Eucgr.J01400 Eucalyptus grandis HOM05D006839 ORTHO05D007872 6.7e-19 97.8 124 41.9
Eucgr.A00847 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.1e-18 97.1 134 38.1
Nitab4.5_0006691g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.5e-18 96.7 102 48.0
SMO364G0778 Selaginella moellendorffii HOM05D006839 ORTHO05D007872 1.9e-18 96.3 126 39.7
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.3e-18 95.5 132 37.1
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 9.7e-18 94.0 132 34.8
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.2e-17 92.8 128 39.8
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.2e-17 92.8 134 39.6
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 2.8e-17 92.4 132 34.8
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 6.3e-17 91.3 127 39.4
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.8e-16 89.7 138 37.0
PGSC0003DMG400029246 Solanum tuberosum HOM05D006839 ORTHO05D007872 5.3e-16 88.2 82 51.2
Nitab4.5_0000771g0190 Nicotiana tabacum HOM05D006839 ORTHO05D007872 6.9e-16 87.8 93 46.2
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 9.1e-16 87.4 128 38.3
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.2e-15 87.0 113 40.7
Peaxi162Scf00681g00002 Petunia axillaris HOM05D006839 ORTHO05D007872 1.5e-15 86.7 113 40.7
Eucgr.L00883 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.9e-14 82.4 79 48.1
Eucgr.A00843 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.4e-13 80.1 95 36.8
PGR119G1259 Punica granatum HOM05D006839 ORTHO05D007872 3.2e-13 79.0 112 37.5
Nitab4.5_0009973g0030 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.6e-12 75.5 114 39.5
Actinidia21107 Actinidia chinensis HOM05D000265 ORTHO05D000161 4.7e-12 75.1 55 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1661 Anthoceros agrestis HOM05D058811 ORTHO05D019592 4.7e-12 75.1 106 37.7
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 5.1e-11 71.6 107 31.8
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 5.1e-11 71.6 107 31.8
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 2.0e-10 69.7 131 33.6
Nitab4.5_0000003g0350 Nicotiana tabacum HOM05D006839 ORTHO05D007872 4.4e-10 68.6 119 36.1
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 5.7e-10 68.2 134 32.1
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 2.2e-09 66.2 110 32.7
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 2.2e-09 66.2 113 32.7
AagrBONN_evm.TU.Sc2ySwM_344.1662 Anthoceros agrestis HOM05D032874 ORTHO05D007872 4.1e-08 62.0 107 33.6
AagrBONN_evm.TU.Sc2ySwM_344.366 Anthoceros agrestis HOM05D006839 ORTHO05D007872 5.3e-08 61.6 129 28.7
MD10G1313300 Malus domestica HOM05D000022 ORTHO05D000071 1.5e-07 60.1 54 44.4
SEGI_04228 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 2.6e-07 59.3 99 35.4
SEGI_04995 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 2.6e-07 59.3 99 35.4
MD10G1313600 Malus domestica HOM05D000022 ORTHO05D000071 1.0e-06 57.4 54 42.6
MBI06_g46600_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D002153 1.3e-06 57.0 123 26.8
Peaxi162Scf00681g00011 Petunia axillaris HOM05D006839 ORTHO05D007872 1.3e-06 57.0 64 45.3
Potri.004G023700 Populus trichocarpa HOM05D000022 ORTHO05D000071 1.3e-06 57.0 54 42.6
PGR031G2486 Punica granatum HOM05D023640 ORTHO05D019592 1.3e-06 57.0 117 32.5
SEGI_12409 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 1.3e-06 57.0 102 31.4
CAN.G674.24 Capsicum annuum HOM05D000022 ORTHO05D000071 1.7e-06 56.6 121 31.4
Migut.H00722 Erythranthe guttata HOM05D000022 ORTHO05D000306 1.7e-06 56.6 54 40.7
Glyma.09G151400 Glycine max HOM05D000022 ORTHO05D010537 1.7e-06 56.6 54 44.4
Lalb_Chr02g0144771 Lupinus albus HOM05D000022 ORTHO05D000071 1.7e-06 56.6 117 30.8
PGR042G2884 Punica granatum HOM05D000022 ORTHO05D000306 1.7e-06 56.6 54 44.4
TPR.G10812 Trifolium pratense HOM05D000022 ORTHO05D000306 1.7e-06 56.6 92 33.7
Actinidia17392 Actinidia chinensis HOM05D000022 ORTHO05D000071 2.2e-06 56.2 115 30.4
Gohir.A06G208400 Gossypium hirsutum HOM05D000022 ORTHO05D000071 2.2e-06 56.2 54 44.4
Gohir.D06G212650 Gossypium hirsutum HOM05D000022 ORTHO05D000071 2.2e-06 56.2 54 44.4
Gohir.D06G212700 Gossypium hirsutum HOM05D000022 ORTHO05D000071 2.2e-06 56.2 54 44.4
Gorai.010G253400 Gossypium raimondii HOM05D000022 ORTHO05D000071 2.2e-06 56.2 54 44.4
Phvul.008G077600 Phaseolus vulgaris HOM05D000022 ORTHO05D010537 2.2e-06 56.2 121 28.9
SEGI_22649 Sequoiadendron giganteum HOM05D000022 ORTHO05D000306 2.9e-06 55.8 99 33.3
COL.COLO4_31718 Corchorus olitorius HOM05D000022 ORTHO05D000071 3.8e-06 55.5 74 32.4
PSO732G0771 Papaver somniferum HOM05D000022 ORTHO05D000071 3.8e-06 55.5 117 28.2
Sabra04G0013100 Salix brachista HOM05D000022 ORTHO05D000306 3.8e-06 55.5 118 31.4
TPR.G5552 Trifolium pratense HOM05D000022 ORTHO05D000071 3.8e-06 55.5 111 29.7
arahy.Tifrunner.gnm1.ann1.8PXZ53 Arachis hypogaea HOM05D000022 ORTHO05D000306 5.0e-06 55.1 93 35.5
arahy.Tifrunner.gnm1.ann1.AD1RX8 Arachis hypogaea HOM05D000022 ORTHO05D000071 5.0e-06 55.1 108 27.8
SEGI_04494 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 5.0e-06 55.1 112 29.5
SEGI_13631 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 5.0e-06 55.1 112 30.4
CSS0048814 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 6.5e-06 54.7 52 46.2
Glyma.11G002800 Glycine max HOM05D000022 ORTHO05D000071 6.5e-06 54.7 59 39.0
Lj1g0001983 Lotus japonicus HOM05D000022 ORTHO05D000071 6.5e-06 54.7 62 37.1
SEGI_13509 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 6.5e-06 54.7 97 29.9
Migut.M01273 Erythranthe guttata HOM05D000022 ORTHO05D000071 8.5e-06 54.3 67 38.8
QL05p075495 Quercus lobata HOM05D000022 ORTHO05D000071 8.5e-06 54.3 59 39.0
QL08p032470 Quercus lobata HOM05D000022 ORTHO05D000071 8.5e-06 54.3 59 39.0
TPR.G21132 Trifolium pratense HOM05D000022 ORTHO05D000306 8.5e-06 54.3 113 31.9


User provided reference genes

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