Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1746.1 922 100.0
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 0.0e+00 1496.1 922 85.2
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1450.6 927 84.0
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1420.2 926 82.5
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1418.7 926 82.6
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1414.4 926 82.3
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 0.0e+00 1412.1 926 82.6
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1347.0 926 79.7
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1258.0 928 72.7
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 0.0e+00 1242.3 967 70.2
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 0.0e+00 1205.7 928 71.0
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 0.0e+00 1189.5 934 68.1
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1184.5 936 68.6
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1173.7 930 68.5
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 0.0e+00 1166.0 932 68.6
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 0.0e+00 1164.1 932 67.9
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 0.0e+00 1163.7 919 68.9
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 0.0e+00 1162.5 926 67.4
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 0.0e+00 1162.1 928 68.2
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1154.0 929 67.8
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 0.0e+00 1153.3 930 67.6
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 0.0e+00 1152.9 923 67.1
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 0.0e+00 1150.2 929 67.5
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 0.0e+00 1149.4 922 67.5
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 0.0e+00 1147.5 922 65.9
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1143.6 929 66.5
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 0.0e+00 1140.6 927 67.1
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 0.0e+00 1135.6 936 65.6
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1120.9 927 65.3
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1118.2 929 65.1
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 0.0e+00 1115.5 932 66.6
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 0.0e+00 1108.2 881 67.7
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1104.4 924 65.9
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 0.0e+00 1102.0 907 66.6
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 0.0e+00 1099.3 936 64.1
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 0.0e+00 1095.9 932 65.2
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 0.0e+00 1089.3 926 64.0
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1082.4 926 65.7
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 0.0e+00 1080.5 936 63.2
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 0.0e+00 1075.5 904 65.3
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 0.0e+00 1075.1 907 65.5
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 1.9e-311 1072.4 884 65.8
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 3.2e-311 1071.6 871 66.4
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 1.4e-309 1066.2 888 65.3
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 2.6e-308 1062.0 924 63.7
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 4.5e-308 1061.2 862 66.1
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 2.9e-307 1058.5 892 64.3
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 7.1e-306 1053.9 921 60.6
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 3.9e-304 1048.1 932 62.0
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 8.2e-302 1040.4 887 62.7
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 3.1e-301 1038.5 912 62.4
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 4.0e-301 1038.1 949 60.8
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 4.5e-300 1034.6 920 61.4
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 4.6e-297 1024.6 923 61.1
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 3.9e-296 1021.5 914 61.5
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 7.4e-295 1017.3 917 61.2
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 1.3e-294 1016.5 929 60.9
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.6e-294 1016.1 935 60.2
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 6.3e-294 1014.2 924 58.7
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.0e-292 1009.2 929 59.6
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 7.7e-292 1007.3 929 60.1
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 2.2e-291 1005.7 911 61.7
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 6.5e-291 1004.2 939 59.6
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 5.5e-290 1001.1 926 59.2
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 1.6e-289 999.6 925 60.3
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.6e-289 999.6 926 59.2
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 3.9e-288 995.0 838 65.0
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 1.5e-287 993.0 925 59.9
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 2.5e-287 992.3 925 59.9
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 2.5e-287 992.3 925 59.9
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 2.5e-287 992.3 930 60.1
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.3e-286 989.9 789 66.4
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 2.6e-284 982.2 871 62.0
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 2.6e-284 982.2 930 58.6
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 7.7e-284 980.7 929 58.1
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.7e-283 979.5 929 58.6
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 5.5e-282 974.5 919 57.6
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 7.2e-282 974.2 907 57.6
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 8.2e-278 960.7 924 57.1
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 1.0e-275 953.7 847 63.5
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 8.5e-275 950.7 942 58.3
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 2.5e-274 949.1 896 59.6
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 9.4e-274 947.2 930 58.5
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 3.7e-270 935.3 800 64.8
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 2.0e-268 929.5 752 66.9
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.9e-267 925.6 926 55.7
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 3.6e-257 892.1 863 57.1
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 4.7e-257 891.7 863 55.5
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 8.0e-257 891.0 856 57.7
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.4e-253 879.4 890 55.2
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 9.5e-242 840.9 658 67.0
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 2.8e-241 839.3 931 53.6
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 8.9e-240 834.3 710 67.5
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.3e-238 830.5 798 58.6
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 6.8e-232 808.1 809 54.3
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 2.9e-222 776.2 706 61.2
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 2.1e-220 770.0 550 72.5
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.6e-201 707.2 551 67.2
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 2.7e-196 689.9 659 55.7
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 2.1e-185 653.7 915 43.1
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 5.3e-184 649.0 882 43.8
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 3.8e-182 642.9 476 70.0
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 8.4e-182 641.7 893 42.8
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.5e-178 630.2 887 42.1
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 1.6e-177 627.5 801 48.9
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 1.0e-171 608.2 479 70.8
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 2.6e-154 550.4 861 39.5
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 9.5e-133 478.8 426 61.0
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 8.6e-110 402.5 405 55.1
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 4.7e-108 396.7 309 66.7
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 4.7e-108 396.7 953 33.2
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 7.6e-106 389.4 916 31.2
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.7e-105 388.3 348 58.3
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 4.9e-105 386.7 289 68.2
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.6e-100 371.7 983 29.1
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 4.9e-97 360.1 217 88.5
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.3e-94 352.1 453 48.8
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.3e-89 335.5 333 59.8
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.1e-87 328.2 949 28.8
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 5.6e-85 320.1 267 62.9
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.9e-80 305.1 455 45.5
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.2e-74 285.8 256 60.2
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 6.5e-73 280.0 397 48.9
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 5.0e-65 253.8 181 70.7
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 4.6e-55 220.7 164 70.7
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 6.1e-55 220.3 172 69.8
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-50 206.1 270 44.1
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.5e-50 205.7 375 39.5
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 1.3e-49 202.6 127 83.5
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 1.5e-40 172.6 132 68.9
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 1.8e-38 165.6 132 65.2
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 8.8e-38 163.3 177 48.0
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 1.2e-34 152.9 139 61.9
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 3.0e-30 138.3 97 76.3
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 1.1e-27 129.8 167 51.5
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.1e-27 129.8 97 72.2
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 3.7e-20 104.8 75 77.3
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.3e-17 96.3 95 58.9
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.3e-17 95.5 70 77.1
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.5e-16 92.8 154 31.2
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 4.3e-16 91.3 92 56.5
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 3.6e-15 88.2 178 38.8
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.4e-14 86.3 119 47.9
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.0e-13 82.4 48 81.2
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.2e-11 73.6 105 43.8
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.1e-08 66.6 63 55.6
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 5.6e-08 64.3 60 53.3
Prupe.2G059500 Prunus persica HOM05D005096 ORTHO05D006566 3.1e-06 58.5 32 93.8


User provided reference genes

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