Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 0.0e+00 1113.6 564 100.0
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 5.7e-290 1000.3 565 88.1
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 3.3e-277 958.0 565 84.2
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 7.3e-277 956.8 568 86.4
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 9.5e-277 956.4 566 86.6
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.4e-272 941.8 565 83.7
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 5.4e-272 940.6 565 84.1
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.3e-270 936.0 565 83.0
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.3e-270 935.3 562 83.6
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.6e-270 933.7 565 83.5
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.2e-267 924.1 562 82.7
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.8e-267 923.7 565 82.5
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 2.0e-266 922.2 549 84.2
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 7.0e-264 913.7 570 81.4
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 6.4e-257 890.6 570 78.8
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 6.6e-254 880.6 545 81.8
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 2.0e-250 869.0 570 78.1
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.6e-247 859.4 570 77.5
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.1e-243 846.7 569 76.3
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 6.9e-243 844.0 570 75.8
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 5.8e-242 840.9 595 73.9
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 6.4e-241 837.4 570 75.8
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 2.1e-239 832.4 570 74.7
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 4.6e-239 831.2 571 75.8
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.7e-238 829.3 570 74.2
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 3.0e-238 828.6 570 74.7
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 8.7e-238 827.0 572 74.8
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 1.1e-237 826.6 565 76.5
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 1.5e-237 826.2 569 74.5
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.3e-236 823.2 564 76.4
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.3e-236 823.2 562 74.7
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.2e-234 816.6 566 75.6
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.0e-234 815.8 566 75.4
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 9.9e-234 813.5 570 73.5
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 1.3e-233 813.1 572 72.9
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 2.9e-233 812.0 570 73.2
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.9e-233 811.2 567 75.0
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 6.4e-233 810.8 566 75.6
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 6.4e-233 810.8 567 75.1
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 2.1e-231 805.8 570 73.5
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 7.9e-231 803.9 572 73.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.3e-230 802.4 573 73.8
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 7.4e-229 797.3 570 72.6
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 4.8e-228 794.7 571 72.2
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.1e-227 793.5 570 71.4
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 3.1e-227 792.0 556 72.5
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 4.0e-227 791.6 571 71.1
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 6.9e-227 790.8 569 70.8
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 9.0e-227 790.4 501 78.2
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.2e-226 790.0 573 70.9
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 2.0e-226 789.3 568 71.1
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 5.8e-226 787.7 573 71.4
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 2.2e-225 785.8 566 70.7
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 4.9e-225 784.6 569 71.7
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 7.1e-224 780.8 568 71.0
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 2.3e-222 775.8 570 69.6
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 2.3e-222 775.8 574 70.0
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.5e-221 772.3 570 71.1
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 1.3e-220 770.0 574 69.7
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.6e-220 769.6 556 71.6
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.1e-220 769.2 570 71.1
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 4.8e-220 768.1 570 68.9
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 8.2e-220 767.3 568 69.2
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.1e-219 765.4 567 72.5
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.3e-217 760.0 429 87.2
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 3.8e-217 758.4 571 69.5
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 1.8e-214 749.6 573 68.6
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.5e-213 746.5 572 67.7
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.3e-213 745.3 504 75.0
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 7.4e-213 744.2 504 75.4
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 1.6e-212 743.0 575 67.7
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 1.4e-211 740.0 564 67.6
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 2.4e-211 739.2 568 67.6
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 3.1e-211 738.8 570 67.7
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 4.1e-211 738.4 568 68.0
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 9.0e-211 737.3 504 74.8
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.7e-209 733.0 571 68.5
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.1e-208 730.3 571 66.2
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 1.4e-208 729.9 579 65.5
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 9.3e-208 727.2 569 67.1
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.2e-207 726.9 502 73.9
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 3.6e-207 725.3 568 67.3
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 7.9e-207 724.2 575 65.7
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 7.9e-207 724.2 509 71.7
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 1.8e-206 723.0 576 65.6
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 2.5e-205 719.2 501 72.1
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 5.7e-205 718.0 571 66.7
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 9.7e-205 717.2 568 67.3
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 4.8e-204 714.9 559 67.1
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 8.2e-204 714.1 577 65.2
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 9.1e-203 710.7 575 64.9
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 3.8e-201 705.3 574 64.6
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 5.0e-201 704.9 539 68.1
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 3.2e-200 702.2 571 65.7
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.2e-199 700.3 574 66.0
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 6.1e-199 698.0 568 64.3
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 6.1e-199 698.0 572 65.7
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 3.0e-198 695.7 508 70.1
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 2.0e-197 693.0 581 64.0
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 3.3e-197 692.2 513 68.0
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 5.7e-197 691.4 576 64.8
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.3e-196 690.3 582 62.4
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 8.2e-196 687.6 572 64.9
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.4e-195 686.8 579 64.1
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 4.1e-195 685.3 561 64.3
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 9.1e-195 684.1 582 62.0
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 2.6e-194 682.6 571 60.2
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 5.9e-194 681.4 567 64.4
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 5.9e-194 681.4 573 63.4
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 8.0e-191 671.0 423 79.2
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.2e-188 662.9 526 65.4
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.3e-180 637.1 579 59.4
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.6e-178 630.2 504 69.2
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 7.7e-178 627.9 515 62.1
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 6.1e-175 618.2 576 59.0
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 9.8e-173 610.9 560 56.2
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 9.1e-171 604.4 351 83.5
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 8.9e-166 587.8 543 57.5
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 2.6e-165 586.3 435 66.4
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.6e-162 577.0 384 72.4
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 6.6e-145 518.5 547 54.1
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 5.6e-144 515.4 510 51.8
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 3.1e-142 509.6 524 50.6
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.1e-139 499.2 479 56.2
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 1.6e-135 487.3 522 50.6
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 7.6e-125 451.8 258 82.9
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 1.6e-122 444.1 535 43.4
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 5.6e-120 435.6 467 56.7
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 6.9e-118 428.7 448 49.6
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 5.4e-115 419.1 497 50.1
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.8e-111 406.8 514 48.1
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 3.1e-94 350.1 293 64.2
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 3.6e-90 336.7 310 54.2
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 5.1e-89 332.8 470 41.1
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 6.9e-86 322.4 381 51.7
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 2.1e-74 284.3 413 39.5
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 8.2e-71 272.3 570 37.0
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 2.2e-68 264.2 326 41.1
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 2.9e-68 263.8 235 61.3
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 5.4e-46 189.9 168 64.3
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 8.0e-42 176.0 239 45.6
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 5.8e-32 143.3 529 23.3
RcHm_v2.0_Chr7g0205881 Rosa chinensis HOM05D005019 ORTHO05D347162 1.1e-19 102.4 78 71.8
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 9.6e-19 99.4 92 63.0
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 1.7e-12 78.6 79 55.7
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 6.9e-09 66.6 54 64.8
Os05g0519500 Oryza sativa ssp. japonica HOM05D004669 ORTHO05D005767 3.2e-06 57.8 261 24.9


User provided reference genes

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