Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1694.9 842 100.0
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1451.0 877 85.2
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1447.6 878 84.7
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1393.6 897 80.5
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1365.9 899 78.6
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1348.6 890 79.0
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1345.1 922 76.6
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1343.6 899 78.2
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1343.2 914 77.4
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1323.5 878 76.2
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1312.4 878 76.7
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1309.3 853 76.9
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1281.9 888 72.9
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1281.5 874 74.8
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1276.2 885 76.0
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1274.6 853 75.5
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1273.1 860 75.1
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1269.2 922 70.8
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1265.4 907 71.0
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1263.4 880 73.0
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1254.6 882 72.8
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1252.7 876 72.7
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1250.7 882 74.0
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1250.3 962 67.6
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1250.0 880 73.3
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1248.8 880 73.3
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1248.8 880 74.2
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1246.1 880 73.2
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1240.3 877 73.2
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1234.9 881 71.7
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1233.0 898 72.7
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1231.5 880 73.2
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1230.3 888 71.4
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1228.0 878 70.4
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1226.8 882 71.5
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1219.9 881 70.6
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1202.6 875 71.2
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1199.9 887 71.9
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1197.6 866 70.9
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1193.7 883 70.2
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1192.2 880 68.8
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1190.3 869 69.6
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1187.2 874 69.0
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1186.8 877 70.0
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1185.6 889 69.0
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1185.2 878 70.0
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1183.3 880 69.2
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1179.1 881 69.0
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1177.5 881 69.2
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1177.2 881 68.7
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1174.8 900 67.6
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1173.7 861 69.9
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1173.7 880 69.0
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1172.9 908 67.4
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1171.0 894 68.7
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1169.5 877 69.7
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1169.1 903 67.8
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1168.7 872 68.9
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1168.3 880 68.0
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1162.9 875 68.8
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1156.7 931 66.3
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1156.4 877 68.2
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1156.0 882 67.6
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 891 67.6
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1151.3 878 67.5
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1149.4 882 68.3
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1149.0 877 67.7
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1142.1 896 67.5
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1142.1 886 67.6
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 890 67.3
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1134.4 914 65.1
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1131.7 914 65.0
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1129.8 878 66.3
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1129.0 892 65.7
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1126.7 888 65.4
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1125.5 876 66.0
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1124.8 887 65.7
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1122.8 878 68.8
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1122.8 866 66.1
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1121.7 888 65.7
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1119.8 879 65.9
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1117.1 882 67.8
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1117.1 882 65.9
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1114.8 898 64.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1113.2 752 74.1
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1105.9 878 66.3
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1105.9 885 66.2
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1105.1 877 66.1
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1099.3 878 64.9
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1095.9 912 63.7
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1095.1 887 64.5
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1093.2 885 65.9
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1088.2 880 66.0
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1087.0 865 65.1
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1084.3 880 64.4
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1080.9 873 63.9
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1079.7 894 64.8
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1077.4 867 64.4
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 1.2e-311 1073.2 878 64.9
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 2.0e-310 1068.9 886 64.2
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 9.7e-310 1066.6 906 63.6
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 4.8e-309 1064.3 883 64.8
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 3.1e-308 1061.6 879 64.2
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 3.8e-306 1054.7 887 63.2
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 8.5e-306 1053.5 877 64.0
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 4.2e-305 1051.2 887 63.1
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 9.4e-305 1050.0 893 63.3
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.4e-303 1046.2 873 62.9
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 2.3e-303 1045.4 880 63.6
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 2.6e-302 1042.0 878 62.1
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 8.2e-301 1036.9 888 62.4
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 2.4e-300 1035.4 942 58.8
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 2.4e-300 1035.4 882 62.2
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 1.5e-297 1026.2 871 63.0
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 4.2e-297 1024.6 836 64.5
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 5.7e-294 1014.2 759 68.2
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 5.4e-292 1007.7 805 65.1
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 6.5e-290 1000.7 874 61.7
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 8.0e-288 993.8 871 61.9
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 8.8e-287 990.3 906 58.3
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 2.2e-285 985.7 863 62.9
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 3.1e-284 981.9 913 59.1
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.0e-282 976.9 864 60.2
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 2.0e-275 952.6 856 58.6
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.7e-274 949.5 898 57.6
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 7.3e-273 944.1 896 57.6
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 2.6e-270 935.6 962 54.7
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 6.4e-269 931.0 601 77.0
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.1e-260 903.7 583 75.8
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.0e-254 882.9 882 56.7
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 9.9e-254 880.6 806 58.3
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 3.5e-251 872.1 913 53.7
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.6e-243 846.7 850 53.3
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 7.3e-241 837.8 872 52.2
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.1e-239 833.9 923 51.1
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 3.5e-235 818.9 866 52.7
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.3e-234 817.0 869 51.8
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 1.5e-233 813.5 857 51.3
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 4.3e-233 812.0 875 49.8
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 2.7e-219 766.1 585 69.4
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 7.9e-219 764.6 794 52.9
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.4e-214 749.2 604 61.6
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 3.0e-202 709.5 856 46.3
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 3.4e-198 696.0 572 59.4
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 5.5e-196 688.7 591 56.9
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 5.9e-190 668.7 588 55.4
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.2e-177 627.9 635 55.1
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.5e-177 627.5 613 51.2
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 1.1e-175 621.3 849 44.6
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 7.0e-175 618.6 660 52.9
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 3.7e-160 569.7 588 53.7
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.9e-136 490.3 569 45.7
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 4.6e-126 456.4 519 50.3
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.8e-122 444.5 428 55.1
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.9e-112 410.6 491 47.5
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 2.7e-110 404.1 401 58.1
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 8.7e-109 399.1 578 37.2
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 9.0e-98 362.5 264 65.9
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.0e-88 332.4 488 43.9
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.1e-87 328.9 225 69.3
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 4.6e-86 323.6 698 30.8
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.0e-80 305.8 264 58.7
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 1.1e-71 275.8 175 73.1
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 1.0e-61 242.7 478 30.5
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.2e-60 239.2 156 75.6
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 5.7e-60 236.9 520 28.7
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.7e-40 172.2 359 36.2
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.0e-24 119.8 153 49.0
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.8e-21 109.0 74 74.3
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 3.2e-18 98.2 198 34.8
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 4.1e-18 97.8 71 62.0
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.4e-13 82.0 106 48.1
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 8.4e-11 73.6 345 24.6
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 6.0e-09 67.4 74 54.1


User provided reference genes

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