Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 8.7e-271 936.4 483 100.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 2.2e-221 772.3 491 82.1
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.3e-194 683.3 485 72.2
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-193 679.5 485 72.6
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 9.5e-193 677.2 485 72.2
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 2.1e-192 676.0 491 71.5
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 4.7e-192 674.9 485 72.2
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-190 670.2 516 68.8
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.9e-189 665.6 478 71.5
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.4e-188 663.3 485 70.3
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 5.4e-188 661.4 490 70.8
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 7.0e-188 661.0 485 70.9
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 4.6e-187 658.3 485 70.7
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 3.0e-186 655.6 494 69.6
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.9e-186 655.2 471 71.5
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 5.0e-186 654.8 485 69.3
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-185 653.7 508 67.9
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.9e-185 652.9 485 70.7
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.7e-184 648.3 492 68.5
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 2.3e-183 646.0 485 69.3
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 5.2e-183 644.8 485 69.1
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.5e-182 643.3 485 69.1
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-180 636.3 463 71.3
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.9e-180 636.3 487 68.0
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 3.2e-180 635.6 485 68.5
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 5.4e-180 634.8 486 68.5
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.6e-179 633.3 460 69.8
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.7e-178 629.8 490 67.3
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 3.3e-177 625.5 460 68.9
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.6e-177 624.8 490 66.9
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.7e-176 621.7 492 68.3
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 4.0e-175 618.6 495 67.1
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 6.8e-175 617.8 486 67.5
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 8.9e-175 617.5 486 67.1
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.5e-174 616.7 505 66.1
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 6.4e-173 611.3 487 67.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.1e-172 610.5 489 65.4
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.5e-169 600.1 487 65.5
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.9e-169 599.7 488 63.1
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.2e-168 597.0 502 65.1
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 4.7e-168 595.1 489 63.8
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 6.2e-168 594.7 484 65.5
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.0e-166 589.7 487 64.7
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 4.4e-166 588.6 497 64.4
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.2e-164 582.4 434 69.4
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 3.2e-164 582.4 423 70.9
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 4.2e-164 582.0 459 66.4
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.4e-164 581.6 533 60.6
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 5.4e-164 581.6 485 63.1
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.1e-164 581.3 533 60.6
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.7e-163 579.3 485 61.6
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.0e-162 577.4 485 61.2
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.3e-162 577.0 489 62.4
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 8.7e-162 574.3 489 62.8
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.5e-161 572.8 498 63.1
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.5e-161 572.8 487 60.6
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 4.8e-160 568.5 499 61.1
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 4.8e-160 568.5 499 61.1
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 8.1e-160 567.8 489 60.7
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.1e-159 567.4 511 60.3
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.8e-159 566.6 492 60.6
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 3.1e-159 565.8 485 61.2
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.0e-159 565.5 487 60.2
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.3e-157 560.5 491 60.5
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.3e-157 560.5 494 60.3
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.9e-157 559.3 461 64.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 6.4e-157 558.1 485 59.8
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 8.4e-157 557.8 493 62.3
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 7.1e-156 554.7 485 60.6
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.2e-155 553.9 495 61.4
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.2e-155 553.9 495 61.0
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 3.5e-155 552.4 492 60.4
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.0e-154 549.3 507 61.3
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 7.4e-153 544.7 490 59.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 9.6e-153 544.3 485 59.4
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.3e-152 543.9 454 64.1
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 6.2e-152 541.6 492 58.3
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 6.2e-152 541.6 492 60.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.4e-151 539.7 490 59.8
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 9.0e-151 537.7 430 67.7
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.5e-150 535.4 490 58.0
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.9e-149 532.7 485 59.2
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 8.4e-149 531.2 587 52.1
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 2.7e-147 526.2 441 61.7
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 6.7e-146 521.5 493 58.8
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 8.7e-146 521.2 477 57.9
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 8.7e-146 521.2 489 57.9
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 8.7e-146 521.2 485 57.9
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.5e-145 520.4 492 58.3
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.9e-145 520.0 486 57.8
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 5.6e-145 518.5 487 57.3
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 4.8e-144 515.4 487 57.7
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 6.2e-144 515.0 490 56.5
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.1e-143 514.2 495 58.0
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 2.4e-143 513.1 486 57.4
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 4.0e-143 512.3 445 63.4
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 5.3e-143 511.9 486 56.4
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.2e-142 510.8 494 57.3
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.0e-142 510.0 468 58.5
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 3.4e-142 509.2 490 56.1
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 5.8e-142 508.4 487 56.7
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 4.9e-141 505.4 544 53.3
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.1e-140 504.2 408 65.0
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.9e-140 503.4 518 54.6
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 3.2e-140 502.7 509 54.2
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 7.1e-140 501.5 486 56.2
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-139 500.7 487 56.7
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.7e-139 499.6 489 55.6
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 7.9e-139 498.0 483 56.5
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 6.7e-138 495.0 487 55.9
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.9e-137 493.4 488 55.9
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 4.3e-137 492.3 484 55.0
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.6e-136 490.3 493 55.6
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.2e-136 490.0 472 55.7
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.7e-136 489.2 460 59.3
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 9.0e-135 484.6 485 53.8
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.5e-134 482.3 453 59.2
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.9e-132 476.9 401 60.1
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 5.5e-132 475.3 483 54.5
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-131 473.0 486 53.9
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 2.7e-131 473.0 487 53.8
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 3.4e-126 456.1 463 53.8
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.9e-124 450.3 486 52.3
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 3.2e-124 449.5 474 52.5
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.8e-122 443.7 467 53.1
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.7e-120 437.2 485 51.3
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 2.2e-120 436.8 498 52.6
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.0e-117 427.9 388 55.9
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 6.1e-115 418.7 461 51.2
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.5e-110 402.5 450 53.1
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.4e-108 394.8 491 49.7
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 8.3e-104 381.7 488 46.7
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 8.3e-104 381.7 396 55.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 8.3e-96 355.1 482 47.5
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 3.1e-95 353.2 411 51.1
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 3.5e-94 349.7 216 75.9
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 2.5e-92 343.6 451 43.0
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.2e-91 341.3 216 73.1
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.0e-91 338.6 407 49.1
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.7e-88 330.9 446 44.8
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 6.3e-88 328.9 345 54.5
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 8.3e-88 328.6 382 46.6
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 6.8e-82 308.9 306 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 7.5e-81 305.4 302 51.3
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.1e-79 301.6 222 63.1
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.4e-79 301.2 348 45.1
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 7.1e-71 272.3 186 69.4
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.6e-54 216.5 156 67.9
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.3e-51 208.4 316 44.0
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 6.2e-51 206.1 134 67.9
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.5e-44 184.1 269 45.0
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 3.6e-43 180.3 237 48.1
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.1e-38 164.5 375 31.5
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.9e-36 157.9 232 36.2
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.3e-32 145.2 95 68.4
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 8.4e-32 142.5 190 36.3
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.9e-29 133.7 122 65.6
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 2.8e-27 127.5 76 72.4
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 5.3e-26 123.2 226 38.5
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.9e-23 114.8 115 60.0
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.2e-23 113.6 70 68.6
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 1.5e-17 95.1 56 73.2
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 2.6e-17 94.4 258 26.0
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.3e-16 92.0 94 54.3
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 9.7e-12 75.9 43 81.4
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.8e-11 74.3 74 55.4
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 3.7e-11 73.9 74 60.8
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 2.4e-10 71.2 57 66.7
C01p23590 Brassica napus HOM05D026626 ORTHO05D027483 6.1e-06 56.6 123 32.5
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 6.1e-06 56.6 50 50.0


User provided reference genes

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