Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 9.5e-122 440.3 235 100.0
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.2e-113 413.3 234 94.9
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 5.8e-111 404.4 240 92.5
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 9.6e-90 334.0 235 79.1
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 6.0e-84 314.7 236 69.9
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 6.0e-84 314.7 215 80.0
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.1e-82 310.5 240 70.8
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 1.5e-82 310.1 231 70.1
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.8e-81 305.8 233 67.8
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 4.8e-81 305.1 238 67.2
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 8.1e-81 304.3 237 71.3
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 1.4e-80 303.5 234 75.2
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 4.0e-80 302.0 234 74.4
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 4.0e-80 302.0 234 67.9
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 6.9e-80 301.2 235 70.2
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 9.0e-80 300.8 234 71.4
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 9.0e-80 300.8 237 70.9
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.2e-79 300.4 235 69.4
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.2e-79 300.4 235 69.8
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.5e-79 300.1 235 70.2
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.5e-79 300.1 234 67.5
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 2.6e-79 299.3 239 65.7
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 4.5e-79 298.5 235 73.6
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 4.5e-79 298.5 237 72.6
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 5.8e-79 298.1 234 67.1
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.0e-78 297.4 235 69.4
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.3e-78 297.0 237 66.2
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.7e-78 296.6 236 65.3
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.7e-78 296.6 236 65.3
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 2.2e-78 296.2 232 70.3
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 2.9e-78 295.8 236 72.9
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 8.4e-78 294.3 207 80.2
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.1e-77 293.9 235 68.9
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.1e-77 293.9 233 70.0
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.1e-77 293.9 233 69.5
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 2.5e-77 292.7 236 69.9
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 3.2e-77 292.4 232 64.7
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 3.2e-77 292.4 238 65.1
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 5.5e-77 291.6 238 71.0
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 4.6e-76 288.5 234 68.8
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 4.6e-76 288.5 231 68.0
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 7.9e-76 287.7 230 67.8
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 7.9e-76 287.7 236 69.1
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.3e-75 287.0 232 69.4
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.8e-75 286.6 238 64.3
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.8e-75 286.6 232 65.1
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.8e-75 286.6 186 81.7
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 2.3e-75 286.2 235 63.4
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 3.0e-75 285.8 233 67.8
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 3.0e-75 285.8 232 64.7
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 3.9e-75 285.4 230 67.8
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 3.9e-75 285.4 231 63.6
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 5.1e-75 285.0 230 67.8
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 5.1e-75 285.0 241 63.1
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 6.7e-75 284.6 233 66.1
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 6.7e-75 284.6 231 66.2
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.1e-74 283.9 225 66.7
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 1.1e-74 283.9 235 62.6
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.1e-74 283.9 230 68.3
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.1e-74 283.9 238 63.4
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.1e-74 283.9 238 63.4
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.5e-74 283.5 229 62.9
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.9e-74 283.1 230 68.3
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 2.5e-74 282.7 236 65.3
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.5e-74 282.7 230 64.8
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 3.3e-74 282.3 186 80.6
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 7.4e-74 281.2 230 67.0
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 1.3e-73 280.4 230 67.4
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.3e-73 280.4 239 63.2
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.1e-73 279.6 230 62.6
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.1e-73 279.6 230 68.3
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.8e-73 279.3 230 65.2
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.8e-73 279.3 230 65.2
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 2.8e-73 279.3 234 61.5
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 4.8e-73 278.5 230 62.2
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 4.8e-73 278.5 230 67.0
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 4.8e-73 278.5 230 67.0
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 4.8e-73 278.5 230 67.0
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 6.3e-73 278.1 234 61.5
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 8.2e-73 277.7 231 62.3
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.1e-72 277.3 216 71.3
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 9.0e-72 274.2 240 63.3
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 9.0e-72 274.2 239 60.3
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.5e-71 273.5 232 66.8
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.0e-71 273.1 237 65.4
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 4.5e-71 271.9 234 67.1
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 5.9e-71 271.6 239 66.9
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.9e-70 269.2 230 60.0
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.9e-70 269.2 230 60.0
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 2.9e-70 269.2 232 66.8
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 3.8e-70 268.9 231 67.1
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 8.4e-70 267.7 240 63.3
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 4.2e-69 265.4 213 69.0
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 4.6e-68 261.9 225 61.3
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.5e-66 256.9 218 67.4
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.3e-65 253.8 204 66.2
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 2.2e-65 253.1 195 69.2
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.8e-65 252.7 211 67.3
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 6.3e-65 251.5 184 72.3
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.4e-64 250.4 176 76.7
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 2.4e-64 249.6 183 71.6
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.5e-63 246.9 208 64.9
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 2.9e-62 242.7 179 70.9
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 2.9e-62 242.7 180 71.1
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.4e-61 240.4 180 70.6
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 8.8e-59 231.1 180 68.9
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 8.8e-51 204.5 136 69.9
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 7.0e-48 194.9 134 66.4
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 1.9e-45 186.8 186 56.5
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.5e-45 186.4 136 64.7
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.6e-44 183.7 136 63.2
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 3.6e-44 182.6 134 63.4
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 8.0e-44 181.4 136 61.8
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.0e-43 181.0 136 62.5
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.3e-43 179.9 136 61.0
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 3.0e-43 179.5 234 49.6
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 6.7e-43 178.3 136 60.3
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 1.1e-42 177.6 135 60.7
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-42 177.6 135 60.7
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-42 177.6 135 60.7
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.1e-42 177.6 135 60.7
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 1.1e-42 177.6 135 60.7
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 2.0e-42 176.8 135 60.7
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 2.0e-42 176.8 135 60.7
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 2.0e-42 176.8 137 59.9
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 3.3e-42 176.0 133 60.9
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.8e-41 172.9 156 54.5
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 8.5e-38 161.4 102 78.4
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.2e-36 157.5 156 51.3
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 6.3e-33 145.2 130 64.6
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 8.3e-33 144.8 104 74.0
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 5.9e-31 138.7 234 47.4
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 6.5e-30 135.2 108 68.5
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 4.7e-28 129.0 91 71.4
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.0e-27 127.9 149 44.3
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 8.8e-27 124.8 132 57.6
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 2.6e-26 123.2 143 43.4
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.7e-26 122.1 186 40.9
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 5.7e-26 122.1 230 44.8
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 7.0e-24 115.2 183 39.3
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.0e-22 111.3 104 65.4
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 6.6e-22 108.6 167 35.9
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.8e-20 103.2 124 47.6
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.2e-18 97.8 146 34.2
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.5e-18 97.4 71 63.4
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 2.6e-18 96.7 149 34.2
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.4e-17 92.0 102 47.1
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.4e-16 90.9 59 74.6
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.8e-12 76.6 109 37.6
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 4.0e-11 72.8 75 54.7
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 5.0e-06 55.8 78 35.9
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 5.0e-06 55.8 78 35.9


User provided reference genes

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