Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G221800 Prunus persica HOM05D006747 ORTHO05D008384 2.8e-132 475.3 244 100.0
RcHm_v2.0_Chr6g0287851 Rosa chinensis HOM05D006747 ORTHO05D008384 5.6e-109 397.9 270 77.8
FAN27G0389 Fragaria x ananassa HOM05D006747 ORTHO05D008384 1.4e-107 393.3 272 76.5
MD05G1195200 Malus domestica HOM05D006747 ORTHO05D008384 1.4e-107 393.3 267 77.5
FAN20G2892 Fragaria x ananassa HOM05D006747 ORTHO05D008384 1.2e-106 390.2 276 75.7
FAN15G1911 Fragaria x ananassa HOM05D006747 ORTHO05D008384 1.3e-105 386.7 272 76.1
Atru.chr5.1716 Acer truncatum HOM05D006747 ORTHO05D008384 7.1e-96 354.4 268 71.6
Cfa002442 Carpinus fangiana HOM05D006747 ORTHO05D008384 9.3e-96 354.0 272 70.2
Thecc.01G256100 Theobroma cacao HOM05D006747 ORTHO05D008384 6.0e-95 351.3 265 70.2
GSVIVG01028355001 Vitis vinifera HOM05D006747 ORTHO05D008384 2.3e-94 349.4 260 70.4
Dinv22393 Davidia involucrata HOM05D006747 ORTHO05D008384 8.7e-94 347.4 266 69.5
TAR362G0605 Trochodendron aralioides HOM05D006747 ORTHO05D008384 6.2e-92 341.3 262 69.5
Gohir.D11G137550 Gossypium hirsutum HOM05D006747 ORTHO05D008384 1.8e-91 339.7 263 68.8
Gorai.007G147500 Gossypium raimondii HOM05D006747 ORTHO05D008384 2.4e-91 339.3 263 69.2
Duzib138G0743 Durio zibethinus HOM05D006747 ORTHO05D008384 5.3e-91 338.2 265 67.9
Potri.005G225900 Populus trichocarpa HOM05D006747 ORTHO05D008384 5.3e-91 338.2 276 66.7
Sabra05G0174300 Salix brachista HOM05D006747 ORTHO05D008384 5.3e-91 338.2 277 66.4
CANSAT01G1212 Cannabis sativa HOM05D006747 ORTHO05D008384 9.0e-91 337.4 269 66.5
FAN24G2059 Fragaria x ananassa HOM05D006747 ORTHO05D008384 9.0e-91 337.4 274 69.0
Gohir.A11G131500 Gossypium hirsutum HOM05D006747 ORTHO05D008384 1.5e-90 336.7 263 68.8
Ciclev10021655m.g Citrus clementina HOM05D006747 ORTHO05D008384 4.5e-90 335.1 244 71.7
COL.COLO4_04026 Corchorus olitorius HOM05D006747 ORTHO05D008384 1.0e-89 334.0 297 61.6
Haze_24648 Corylus avellana HOM05D006747 ORTHO05D008384 2.5e-88 329.3 305 61.6
CiPaw.03G265900 Carya illinoinensis HOM05D006747 ORTHO05D008384 3.2e-88 328.9 279 66.7
Lj5g0027576 Lotus japonicus HOM05D006747 ORTHO05D008384 2.7e-87 325.9 270 66.3
CSS0000886 Camellia sinensis var. sinensis HOM05D006747 ORTHO05D008384 1.0e-86 323.9 257 68.5
Eucgr.B01566 Eucalyptus grandis HOM05D006747 ORTHO05D008384 1.3e-86 323.6 239 69.9
Actinidia30159 Actinidia chinensis HOM05D006747 ORTHO05D008384 2.3e-86 322.8 269 65.1
MSTRG.21486 Avicennia marina HOM05D006747 ORTHO05D008384 2.3e-86 322.8 232 71.1
Phvul.007G192000 Phaseolus vulgaris HOM05D006747 ORTHO05D008384 1.5e-85 320.1 264 65.2
Cc01_g18210 Coffea canephora HOM05D006747 ORTHO05D008384 3.3e-85 318.9 271 62.4
Glyma.06G315300 Glycine max HOM05D006747 ORTHO05D008384 3.3e-85 318.9 278 63.3
PSO063G2179 Papaver somniferum HOM05D006747 ORTHO05D008384 3.3e-85 318.9 276 63.0
TPR.G35130 Trifolium pratense HOM05D006747 ORTHO05D008384 5.7e-85 318.2 270 63.7
Peaxi162Scf00987g00036 Petunia axillaris HOM05D006747 ORTHO05D008384 1.1e-83 313.9 260 63.8
VMungo0720G1324 Vigna mungo HOM05D006747 ORTHO05D008384 1.1e-83 313.9 264 63.6
arahy.Tifrunner.gnm1.ann1.EQ4JVG Arachis hypogaea HOM05D006747 ORTHO05D008384 1.4e-83 313.5 264 63.3
arahy.Tifrunner.gnm1.ann1.0525TE Arachis hypogaea HOM05D006747 ORTHO05D008384 1.8e-83 313.2 264 63.3
Psat6g054040 Pisum sativum HOM05D006747 ORTHO05D008384 4.1e-83 312.0 270 63.3
PGSC0003DMG400025504 Solanum tuberosum HOM05D006747 ORTHO05D008384 4.1e-83 312.0 272 62.1
Sopen06g003200 Solanum pennellii HOM05D006747 ORTHO05D008384 5.3e-83 311.6 261 64.8
Rhsim13G0036000 Rhododendron simsii HOM05D006747 ORTHO05D008384 9.0e-83 310.8 248 66.9
Lalb_Chr06g0170541 Lupinus albus HOM05D006747 ORTHO05D008384 1.5e-82 310.1 270 64.1
Sp3g33710 Schrenkiella parvula HOM05D006747 ORTHO05D008384 2.6e-82 309.3 244 64.8
AL3G53500 Arabidopsis lyrata HOM05D006747 ORTHO05D008384 3.4e-82 308.9 244 65.6
Solyc06g008350.3 Solanum lycopersicum HOM05D006747 ORTHO05D008384 4.5e-82 308.5 261 64.4
Carub.0003s3494 Capsella rubella HOM05D006747 ORTHO05D008384 5.9e-82 308.1 272 60.7
Migut.D00438 Erythranthe guttata HOM05D006747 ORTHO05D008384 1.0e-81 307.4 238 66.0
Medtr1g069790 Medicago truncatula HOM05D006747 ORTHO05D008384 1.0e-81 307.4 270 61.1
BcaC06g36739 Brassica carinata HOM05D006747 ORTHO05D008384 1.3e-81 307.0 250 63.2
Thhalv10002060m.g Eutrema salsugineum HOM05D006747 ORTHO05D008384 1.7e-81 306.6 272 61.8
Lsat_1_v5_gn_5_182940 Lactuca sativa HOM05D006747 ORTHO05D008384 2.2e-81 306.2 266 60.9
Manes.12G033600 Manihot esculenta HOM05D006747 ORTHO05D008384 2.2e-81 306.2 228 70.2
Aqoxy2G03665 Aquilegia oxysepala HOM05D006747 ORTHO05D008384 2.9e-81 305.8 240 67.5
BraA07t27816Z Brassica rapa HOM05D006747 ORTHO05D008384 5.0e-81 305.1 250 62.8
MBI07_g16913_MAGBIO Magnolia biondii HOM05D006747 ORTHO05D008384 1.9e-80 303.1 257 62.6
BolC7t40498H Brassica oleracea HOM05D006747 ORTHO05D008384 3.2e-80 302.4 251 62.9
SalBow4G0984 Salvia bowleyana HOM05D006747 ORTHO05D008384 3.2e-80 302.4 276 59.4
HanXRQChr09g0254271 Helianthus annuus HOM05D006747 ORTHO05D008384 4.2e-80 302.0 256 63.7
vmacro02672 Vaccinium macrocarpon HOM05D006747 ORTHO05D008384 4.2e-80 302.0 313 55.3
AT2G20495 Arabidopsis thaliana HOM05D006747 ORTHO05D008384 7.2e-80 301.2 244 64.3
C07p00520 Brassica napus HOM05D006747 ORTHO05D008384 7.2e-80 301.2 243 63.8
CARHR111050 Cardamine hirsuta HOM05D006747 ORTHO05D008384 1.2e-79 300.4 251 62.9
ATR0736G001 Amborella trichopoda HOM05D006747 ORTHO05D008384 6.1e-79 298.1 261 61.7
CDE06G1525 Ceratophyllum demersum HOM05D006747 ORTHO05D008384 1.0e-78 297.4 264 60.2
BcaB03g16845 Brassica carinata HOM05D006747 ORTHO05D008384 1.4e-78 297.0 251 60.6
DCAR_012556 Daucus carota HOM05D006747 ORTHO05D008384 3.0e-78 295.8 271 57.9
THA.LOC104804045 Tarenaya hassleriana HOM05D006747 ORTHO05D008384 3.9e-78 295.4 272 60.7
AUR62011854 Chenopodium quinoa HOM05D006747 ORTHO05D008384 3.3e-77 292.4 269 58.4
EL10As5g23483 Beta vulgaris HOM05D006747 ORTHO05D008384 9.7e-77 290.8 248 60.1
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 9.7e-77 290.8 195 74.4
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 2.4e-75 286.2 260 58.1
CsaV3_7G027040 Cucumis sativus L. HOM05D006747 ORTHO05D008384 2.4e-75 286.2 238 61.8
AUR62024699 Chenopodium quinoa HOM05D006747 ORTHO05D008384 4.1e-75 285.4 195 69.2
Sc17g0000600 Simmondsia chinensis HOM05D006747 ORTHO05D008384 5.3e-75 285.0 195 72.3
PGR031G3840 Punica granatum HOM05D006747 ORTHO05D008384 1.2e-74 283.9 195 71.8
MELO3C012750.2 Cucumis melo HOM05D006747 ORTHO05D008384 3.4e-74 282.3 274 55.8
SGA_v2.0_scaffold138G35213 Striga asiatica HOM05D006747 ORTHO05D008384 4.5e-74 282.0 292 55.5
Os07g0458800 Oryza sativa ssp. japonica HOM05D006747 ORTHO05D008384 2.2e-73 279.6 240 59.6
Nn1g02801 Nelumbo nucifera HOM05D006747 ORTHO05D008384 5.5e-72 275.0 239 60.7
Zm00001eb384950 Zea mays HOM05D006747 ORTHO05D008384 2.1e-71 273.1 267 55.8
HPP92_014756 Vanilla planifolia HOM05D006747 ORTHO05D008384 6.1e-71 271.6 195 68.7
unitig_8.g3882 Utricularia gibba HOM05D006747 ORTHO05D008384 1.5e-69 266.9 273 54.6
CAN.G941.16 Capsicum annuum HOM05D006747 ORTHO05D008384 7.4e-69 264.6 192 69.8
A07p00240 Brassica napus HOM05D006747 ORTHO05D008384 5.9e-66 255.0 250 56.0
PSO017G5775 Papaver somniferum HOM05D006747 ORTHO05D008384 4.7e-63 245.4 276 54.0
Hma1.2p1_0273F.1_g109550 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 5.2e-62 241.9 190 68.4
ECA248G1486 Erigeron canadensis HOM05D006747 ORTHO05D008384 2.0e-61 240.0 255 54.1
ClCG09G008030 Citrullus lanatus HOM05D006747 ORTHO05D008384 8.2e-60 234.6 419 37.5
Nitab4.5_0005593g0070 Nicotiana tabacum HOM05D006747 ORTHO05D008384 5.3e-59 231.9 156 73.1
AagrBONN_evm.TU.Sc2ySwM_228.388 Anthoceros agrestis HOM05D006747 ORTHO05D008384 2.1e-55 219.9 253 46.6
Nitab4.5_0000326g0130 Nicotiana tabacum HOM05D006747 ORTHO05D008384 1.4e-54 217.2 216 56.0
Oeu035736.1 Olea europaea HOM05D006747 ORTHO05D008384 1.3e-52 210.7 177 61.6
Pp3c11_10320 Physcomitrium patens HOM05D006747 ORTHO05D008384 5.3e-51 205.3 274 41.2
Mapoly0024s0028 Marchantia polymorpha HOM05D006747 ORTHO05D008384 7.0e-51 204.9 232 47.4
HPP92_028089 Vanilla planifolia HOM05D006747 ORTHO05D008384 3.6e-47 192.6 197 53.8
FvH4_2g21270 Fragaria vesca HOM05D006747 ORTHO05D008384 1.8e-46 190.3 160 66.2
QL09p039580 Quercus lobata HOM05D006747 ORTHO05D008384 7.5e-45 184.9 190 57.9
SMO115G0001 Selaginella moellendorffii HOM05D006747 ORTHO05D008384 3.3e-40 169.5 229 41.0
Sed0026822 Sechium edule HOM05D006747 ORTHO05D008384 2.8e-39 166.4 185 51.9
QL09p039572 Quercus lobata HOM05D006747 ORTHO05D008384 2.6e-37 159.8 90 86.7
Ca_09674_v3 Cicer arietinum L. HOM05D006747 ORTHO05D008384 6.8e-30 135.2 173 47.4
SEGI_35883 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 3.4e-29 132.9 89 69.7
CAN.G507.4 Capsicum annuum HOM05D006747 ORTHO05D008384 7.3e-24 115.2 73 72.6
Hma1.2p1_0273F.1_g109560 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 8.9e-22 108.2 74 74.3
SEGI_30594 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 8.9e-22 108.2 98 55.1
Actinidia34415 Actinidia chinensis HOM05D006747 ORTHO05D008384 2.6e-13 80.1 63 63.5
Actinidia34401 Actinidia chinensis HOM05D006747 ORTHO05D008384 2.9e-12 76.6 61 63.9
Duzib133G0415 Durio zibethinus HOM05D006747 ORTHO05D008384 6.4e-12 75.5 49 73.5
Gohir.A07G213740 Gossypium hirsutum HOM05D006747 ORTHO05D008384 3.2e-11 73.2 154 35.1
Gohir.A07G149550 Gossypium hirsutum HOM05D006747 ORTHO05D008384 1.1e-08 64.7 86 48.8
MD10G1182200 Malus domestica HOM05D006747 ORTHO05D008384 4.3e-08 62.8 64 50.0
Cpa.g.sc165.14 Carica papaya HOM05D006747 ORTHO05D008384 4.7e-07 59.3 54 64.8
Cre07.g348951 Chlamydomonas reinhardtii HOM05D006747 ORTHO05D008384 6.2e-07 58.9 101 29.7
arahy.Tifrunner.gnm1.ann1.K1LLW7 Arachis hypogaea HOM05D006747 ORTHO05D008384 1.4e-06 57.8 40 67.5


User provided reference genes

Program Settings